| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001C06 | Sequence | 544 | 001561 (8) | ref|XP_006358946.1| | 4e-80 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 785 | 002528 (8) | ref|XP_010277758.1| | 2e-05 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
| JMFF004B02 | Sequence | 532 | 001561 (8) | ref|XP_006358946.1| | 6e-61 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 777 | 002528 (8) | ref|XP_004251889.1| | 3e-04 | PREDICTED: UBP1-associated protein 2C-like [Solanum lycopersicum] |
| JMFF004F20 | Sequence | 582 | 001561 (8) | ref|XP_006358946.1| | 5e-71 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 769 | 002528 (8) | ref|XP_004251889.1| | 1e-04 | PREDICTED: UBP1-associated protein 2C-like [Solanum lycopersicum] |
| JMFF008L15 | Sequence | 612 | 001561 (8) | ref|XP_006358946.1| | 2e-74 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 723 | 002528 (8) | ref|XP_010277758.1| | 4e-04 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
| JMFF020B09 | Sequence | 594 | 001561 (8) | ref|XP_006358946.1| | 2e-73 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 771 | 002528 (8) | ref|XP_010277758.1| | 1e-04 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
| JMFF022K12 | Sequence | 459 | 001561 (8) | ref|XP_006358946.1| | 4e-43 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 724 | 002528 (8) | ref|XP_010277758.1| | 4e-04 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
| JMFS122G07 | Sequence | 567 | 002528 (8) | ||||||||
| JMSF047P14 | Sequence | 683 | 001561 (8) | ref|XP_006358946.1| | 4e-108 | PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Solanum t | 726 | 002528 (8) | ref|XP_010277758.1| | 4e-05 | PREDICTED: UBP1-associated protein 2C [Nelumbo nucifera] ref|XP_010277759.1| PRE |
This contig is upended
. : . : . : . : . : . :
JMFS122G07- TTAAACTGTAAGCTGGCAATTGATGGTAAGAAAGG
____________________________________________________________
consensus TTAAACTGTAAGCTGGCAATTGATGGTAAGAAAGG
. : . : . : . : . : . :
JMFS122G07- GAAATCTGGGCCTTCAGGCCCAGGAGGAGCTCAGGGTCCAAGGGAGGGGTTTGGTAATGA
rJMSF047P14+ TTCAGGCCCAGGAGGAGCTCAGGGTCCAAGGGAGGGGTTTGGTAATGA
rJMFF020B09+ TTGGTAATGA
rJMFF001C06+ TTGGTAATGA
____________________________________________________________
consensus GAAATCTGGGCCTTCAGGCCCAGGAGGAGCTCAGGGTCCAAGGGAGGGGTTTGGTAATGA
. : . : . : . : . : . :
JMFS122G07- TATTGGTTTGGGAATGCAGAATGGCATAGGGGCACAATATGGAGGCCCGGGAGGAATTCA
rJMSF047P14+ TATTGGTTTGGGAATGCAGAATGGCATAGGGGCACAATATGGAGGCCCGGGAGGAATTCA
rJMFF020B09+ TATTGGTTTGGGAATGCAGAATGGCATAGGGGCACAATATGGAGGCCCGGGAGGAATTCA
rJMFF001C06+ TATTGGTTTGGGAATGCAGAATGGCATAGGGGCACAATATGGAGGCCCGGGAGGAATTCA
____________________________________________________________
consensus TATTGGTTTGGGAATGCAGAATGGCATAGGGGCACAATATGGAGGCCCGGGAGGAATTCA
. : . : . : . : . : . :
JMFS122G07- TTCGGGTGCCGGAGCGTTCTCTGGAGCTATGGCAACATTGGGTGGTGTAAGTGGCAGTGG
rJMSF047P14+ TTCGGGTGCCGGAGCGTTCTCTGGAGCTATGGCAACATTGGGTGGTGTAAGTGGCAGTGG
rJMFF020B09+ TTCGGGTGCCGGAGCGTTCTCTGGAGCTATGGCAACATTGGGTGGTGTAAGTGGCAGTGG
rJMFF001C06+ TTCGGGTGCCGGAGCGTTCTCTGGAGCTATGGCAACATTGGGTGGTGTAAGTGGCAGTGG
____________________________________________________________
consensus TTCGGGTGCCGGAGCGTTCTCTGGAGCTATGGCAACATTGGGTGGTGTAAGTGGCAGTGG
. : . : . : . : . : . :
JMFS122G07- TGTTAACTTGAATGGTCCGGGATTGCCATCCATTGGGAATCAAGCTGGAGTGTCCCCTAT
rJMSF047P14+ TGTTAACTTGAATGGTCCGGGATTGCCATCCATTGGGAATCAAGCTGGAGTGTCCCCTAT
rJMFF020B09+ TGTTAACTTGAATGGTCCGGGATTGCCATCCATTGGGAATCAAGCTGGAGTGTCCCCTAT
rJMFF001C06+ TGTTAACTTGAATGGTCCGGGATTGCCATCCATTGGGAATCAAGCTGGAGTGTCCCCTAT
rJMFF004B02+ TCCGGGATTGCCATCCATTGGGAATCAAGCTGGAGTGTCCCCTAT
rJMFF004F20+ CATCCATTGGGAATCAAGCTGGAGTGTCCCCTAT
____________________________________________________________
consensus TGTTAACTTGAATGGTCCGGGATTGCCATCCATTGGGAATCAAGCTGGAGTGTCCCCTAT
. : . : . : . : . : . :
JMFS122G07- GGTTGGTGGTGGTTCTGGTCCTTACAACAGGTCACATTTTAGCATTGGTGGTTCAACTGG
rJMSF047P14+ GGTTGGTGGTGGTTCTGGTCCTTACAACAGGTCACATTTTAGCATTGGTGGTTCAACTGG
rJMFF020B09+ GGTTGGTGGTGGTTCTGGTCCTTACAACAGGTCACATTTTAGCATTGGTGGTTCAACTGG
rJMFF001C06+ GGTTGGTGGTGGTTCTGGTCCTTACAACAGGTCACATTTTAGCATTGGTGGTTCAACTGG
rJMFF004B02+ GGTTGGTGGTGGTTCTGGTCCTTACAACAGGTCACATTTTAGCATTGGTGGTTCAACTGG
rJMFF004F20+ GGTTGGTGGTGGTTCTGGTCCTTACAACAGGTCACATTTTAGCATTGGTGGTTCAACTGG
rJMFF022K12+ CTGG
rJMFF008L15+ TGG
____________________________________________________________
consensus GGTTGGTGGTGGTTCTGGTCCTTACAACAGGTCACATTTTAGCATTGGTGGTTCAACTGG
. : . : . : . : . : . :
JMFS122G07- ATATGCTGGCTTTAGTGCATCAACTGGTGGTTTAGGTGGAGTCACGAATGGATATGGAGC
rJMSF047P14+ ATATGCTGGCTTTAGTGCATCAACTGGTGGTTTAGGTGGAGTCACGAATGGATATGGAGC
rJMFF020B09+ ATATGCTGGCTTTAGTGCATCAACTGGTGGTTTAGGTGGAGTCACGAATGGATATGGAGC
rJMFF001C06+ ATATGCTGGCTTTAGTGCATCAACTGGTGGTTTAGGTGGAGTCACGAATGGATATGGAGC
rJMFF004B02+ ATATGCTGGCTTTAGTGCATCAACTGGTGGTTTAGGTGGAGTCACGAATGGATATGGAGC
rJMFF004F20+ ATATGCTGGCTTTAGTGCATCAACTGGTGGTTTAGGTGGAGTCACGAATGGATATGGAGC
rJMFF022K12+ ATATGCTGGCTTTAGTGCATCAACTGGTGGTTTAGGTGGAGTCACGAATGGATATGGAGC
rJMFF008L15+ ATATGCTGGCTTTAGTGCATCAACTGGTGGTTTAGGTGGAGTCACGAATGGATATGGAGC
____________________________________________________________
consensus ATATGCTGGCTTTAGTGCATCAACTGGTGGTTTAGGTGGAGTCACGAATGGATATGGAGC
. : . : . : . : . : . :
JMFS122G07- CCCCGGTGCTGGTAGTGGATTACCTAGTGTTGGTGGTGGATTAGGTGCTGCCACTGGCCG
rJMSF047P14+ CCCCGGTGCTGGTAGTGGATTACCTAGTGTTGGTGGTGGATTAGGTGCTGCCACTGGCCG
rJMFF020B09+ CCCCGGTGCTGGTAGTGGATTACCTAGTGTTGGTGGTGGATTAGGTGCTGCCACTGGCCG
rJMFF001C06+ CCCCGGTGCTGGTAGTGGATTACCTAGTGTTGGTGGTGGATTAGGTGCTGCCACTGGCCG
rJMFF004B02+ CCCCGGTGCTGGTAGTGGATTACCTAGTGTTGGTGGTGGATTAGGTGCTGCCACTGGCCG
rJMFF004F20+ CCCCGGTGCTGGTAGTGGATTACCTAGTGTTGGTGGTGGATTAGGTGCTGCCACTGGCCG
rJMFF022K12+ CCCCGGTGCTGGTAGTGGATTACCTAGTGTTGGTGGTGGATTAGGTGCTGCCACTGGCCG
rJMFF008L15+ CCCCGGTGCTGGTAGTGGATTACCTAGTGTTGGTGGTGGATTAGGTGCTGCCACTGGCCG
____________________________________________________________
consensus CCCCGGTGCTGGTAGTGGATTACCTAGTGTTGGTGGTGGATTAGGTGCTGCCACTGGCCG
. : . : . : . : . : . :
JMFS122G07- TGGCCCGTCTTCATATGCATTACCCCAAAGCTCAGCTGGCATGCCTTCAGGAGATTATCA
rJMSF047P14+ TGGCCCGTCTTCATATGCATTACCCCAAAGCTCAGCTGGCATGCCTTCAGGAGATTATCA
rJMFF020B09+ TGGCCCGTCTTCATATGCATTACCCCAAAGCTCAGCTGGCATGCCTTCAGGAGATTATCA
rJMFF001C06+ TGGCCCGTCTTCATATGCATTACCCCAAAGCTCAGCTGGCATGCCTTCAGGAGATTATCA
rJMFF004B02+ TGGCCCGTCTTCATATGCATTACCCCAAAGCTCAGCTGGCATGCCTTCAGGAGATTATCA
rJMFF004F20+ TGGCCCGTCTTCATATGCATTACCCCAAAGCTCAGCTGGCATGCCTTCAGGAGATTATCA
rJMFF022K12+ TGGCCCGTCTTCATATGCATTACCCCAAAGCTCAGCTGGCATGCCTTCAGGAGATTATCA
rJMFF008L15+ TGGCCCGTCTTCATATGCATTACCCCAAAGCTCAGCTGGCATGCCTTCAGGAGATTATCA
____________________________________________________________
consensus TGGCCCGTCTTCATATGCATTACCCCAAAGCTCAGCTGGCATGCCTTCAGGAGATTATCA
. : . : . : . : . : . :
JMFS122G07- TTCACAAGGTATGCATTACAATATGCCTTCCTCTGGAAATCAAAACCGACAG
rJMSF047P14+ TTCACAAGGTATGCATTACAATATGCCTTCCTCTGGAAATCAAAACCGACAGAATCAACA
rJMFF020B09+ TTCATAAGGTATGCATTACAATATGCCTTCCTCTGGAAATCAAAACCGACAGAATCAACA
rJMFF001C06+ TTCACAAGGTATGCATTACAATATGCCTTCCTCTGGAAATCAAAACCGACAGAATCAACA
rJMFF004B02+ TTCACAAGGTATGCATTACAATATGCCTTCCTCTGGAAATCAAAACCGACAGAATCAACA
rJMFF004F20+ TTCACAAGGTATGCATTACAATATGCCTTCCTCTGGAAATCAAAACCGACAGAATCAACA
rJMFF022K12+ TTCACAAGGTATGCATTACAATATGCCTTCCTCTGGAAATCAAAACCGACAGAATCAACA
rJMFF008L15+ TTCACAAGGTATGCATTACAATATGCCTTCCTCTGGAAATCAAAACCGACAGAATCAACA
____________________________________________________________
consensus TTCACAAGGTATGCATTACAATATGCCTTCCTCTGGAAATCAAAACCGACAGAATCAACA
. : . : . : . : . : . :
rJMSF047P14+ AGCTGGAGCATCACCAGTGCCTAGAGTTATGCATGGGGGCATGTACCAAGGGATGCCTTC
rJMFF020B09+ AGCTGGAGCATCACCAGTGCCTAGAGTTATGCATGGGGGCATGTACCAAGGGATGCCTTC
rJMFF001C06+ AGCTGGAGCATCACCAGTGCCTAGAGTTATGCATGGGGGCATGTACCAAGGGATGCCTTC
rJMFF004B02+ AGCTGGAGCATCACCAGTGCCTAGAGTTATGCATGGGGGCATGTACCAAGGGATGCCTTC
rJMFF004F20+ AGCTGGAGCATCACCAGTGCCTAGAGTTATGCATGGGGGCATGTACCAAGGGATGCCTTC
rJMFF022K12+ AGCTGGAGCATCACCAGTGCCTAGAGTTATGCATGGGGGCATGTACCAAGGGATGCCTTC
rJMFF008L15+ AGCTGGAGCATCACCAGTGCCTAGAGTTATGCATGGGGGCATGTACCAAGGGATGCCTTC
____________________________________________________________
consensus AGCTGGAGCATCACCAGTGCCTAGAGTTATGCATGGGGGCATGTACCAAGGGATGCCTTC
. : . : . : . : . : . :
rJMSF047P14+ TTACTATTGAGGTTTGACAGCTTGTTGGCGCAATTGATTTTATTGGTTCTGGCGTGAATG
rJMFF020B09+ TTACTATTGAGGTTTGACAGCTTGTTGGCGCAATTGATTTTATTGGTTCTGGCGTGAATG
rJMFF001C06+ TTACTATTGAGGTTTGACAGCTTGTTGGCGCAATTGATTTTATTGGTTCTGGCGTGAATG
rJMFF004B02+ TTACTATTGAGGTTTGACAGCTTGTTGGCGCAATTGATTTTATTGGTTCTGGCGTGAATG
rJMFF004F20+ TTACTATTGAGGTTTGACAGCTTGTTGGCGCAATTGATTTTATTGGTTCTGGCGTGAATG
rJMFF022K12+ TTACTATTGAGGTTTGACAGCTTGTTGGCGCAATTGATTTTATTGGTTCTGGCGTGAATG
rJMFF008L15+ TTACTATTGAGGTTTGACAGCTTGTTGGCGCAATTGATTTTATTGGTTCTGGCGTGAATG
____________________________________________________________
consensus TTACTATTGAGGTTTGACAGCTTGTTGGCGCAATTGATTTTATTGGTTCTGGCGTGAATG
. : . : . : . : . : . :
rJMSF047P14+ CTGGCAATTTGGTATCTGCCTTGATGATTTTCATTTGCCGTGTACTTTGGCCTCATCTTC
rJMFF020B09+ CTGGCAATTTGATATCTGCCTTGATGATTTTCATTTGCCGTGTACTTTGGCCTCATCTTC
rJMFF001C06+ CTGGCAATTTGATATCTGCCTTGATGATTTTCATTTGCCGTGTACTTTGGCCTCATCTTC
rJMFF004B02+ CTGGCAATTTGATATCTGCCTTGATGATTTTCATTTGCCGTGTACTTTGGCCTCATCTTC
rJMFF004F20+ CTGGCAATTTGATATCTGCCTTGATGATTTTCATTTGCCGTGTACTTTGGCCTCATCTTC
rJMFF022K12+ CTGGCAATTTGATATCTGCCTTGATGATTTTCATTTGCCGTGTACTTTGGCCTCATCTTC
rJMFF008L15+ CTGGCAATTTGATATCTGCCTTGATGATTTTCATTTGCCGTGTACTTTGGCCTCATCTTC
____________________________________________________________
consensus CTGGCAATTTGATATCTGCCTTGATGATTTTCATTTGCCGTGTACTTTGGCCTCATCTTC
. : . : . : . : . : . :
rJMSF047P14+ ACTTCATCTGTGATCCTT
rJMFF020B09+ ACTTCATCTGTGATCCTTTGTAATTGGTGGTATTAGAAGTGACTATAGAATAGTATTTCT
rJMFF001C06+ ACTTCATCTGTGATCCTTTGTAATTGGTGGTATTAGAAGTGACTATAGAATAGTATTTCT
rJMFF004B02+ ACTTCATCTGTGATCCTTTGTAATTGGTGGTATTAGAAGTGACTATAGAATAGTATTTCT
rJMFF004F20+ ACTTCATCTGTGATCCTTTGTAATTGGTGGTATTAGAAGTGACTATAGAATAGTATTTCT
rJMFF022K12+ ACTTCATCTGTGATCCTTTGTAATTGGTGGTATTAGAAGTGACTATAGAATAGTATTTCT
rJMFF008L15+ ACTTCATCTGTGATCCTTTGTAATTGGTGGTATTAGAAGTGACTATAGAATAGTATTTCT
____________________________________________________________
consensus ACTTCATCTGTGATCCTTTGTAATTGGTGGTATTAGAAGTGACTATAGAATAGTATTTCT
. : . : . : . : . : . :
rJMFF020B09+ CCTTTCCGAAACTGTCTTTCACAGTT
rJMFF001C06+ CCTTTCCGAAACTGTCTTTCACAGTTTT
rJMFF004B02+ CCTTTCCGAAACTGTCTTTCACAGTTTTACTTTATTGTAATTACATTTTTATGGATTTTG
rJMFF004F20+ CCTTTCCGAAACTGTCTTTCACAGTTTTACTTTATTGTAATTACATTTTTATGGATTTTG
rJMFF022K12+ CCTTTCCGAAACTGTCTTTCACAGTTTTACTTTATTGTAATTACATTTTTATGGATTTTG
rJMFF008L15+ CCTTTCCGAAACTGTCTTTCACAGTTTTACTTTATTGTAATTACATTTTTATGGATTTTG
____________________________________________________________
consensus CCTTTCCGAAACTGTCTTTCACAGTTTTACTTTATTGTAATTACATTTTTATGGATTTTG
. : . : . : . : . : . :
rJMFF004B02+ TCTTTTAGATACTTTGTCATCTTTTGATTTTCTACTGAAGCTGGTGCTTCTCTTTTTCTT
rJMFF004F20+ TCTTTTAGATACTTTGTCATCTTTTGATTTTCTACTGAAGCTGGTGCTTCTCTTTTTCTT
rJMFF022K12+ TCTTTTAGATACTTTGTCATCTTTTGATTTTCTACTGAAGCTGGTGCTTCTCTTTTTCTT
rJMFF008L15+ TCTTTTAGATACTTTGTCATCTTTTGATTTTCTACTGAAGCTGGTGCTTCTCTTTTTCTT
____________________________________________________________
consensus TCTTTTAGATACTTTGTCATCTTTTGATTTTCTACTGAAGCTGGTGCTTCTCTTTTTCTT
. : . : . : . : . : . :
rJMFF004B02+ TCTTTAATTGCTGGAGCATGTTTTTCTTTACACTTTAACTCAACGTTTATATTTT
rJMFF004F20+ TCTTTAATTGCTGGAGCATGTTTTTCTTTACACTTTAACTCAACGTTTATATTTT
rJMFF022K12+ TCTTTAATTGCTGGAGCATGTTTTTCTTTACACTTTAACTCAACGTTTATATTTTTCTGG
rJMFF008L15+ TCTTTAATTGCTGGAGCATGTTTTTCTTTACACTTTAACTCAACGTTTATATTTTTCTGG
____________________________________________________________
consensus TCTTTAATTGCTGGAGCATGTTTTTCTTTACACTTTAACTCAACGTTTATATTTTTCTGG
. : . : . : . : . : . :
rJMFF022K12+ GGATTAATAAGAACAATTGCCTTGTATTCTTCCATAGTGTGAAGAATTGCGCA
rJMFF008L15+ GGATTAATAAGAACAATTGCCTTGTATTCTTCCATAGTGTGAAGAATTGCGCAGACAAAG
____________________________________________________________
consensus GGATTAATAAGAACAATTGCCTTGTATTCTTCCATAGTGTGAAGAATTGCGCAGACAAAG