| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008F21 | Sequence | 602 | 002526 (7) | ref|XP_009588260.1| | 5e-54 | PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009 | 580 | 002526 (7) | ref|XP_009588260.1| | 2e-54 | PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009 |
| JMFN008A02 | Sequence | 532 | 002526 (7) | ref|XP_009588260.1| | 1e-54 | PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009 | |||||
| JMFN013G22 | Sequence | 507 | 002526 (7) | ref|XP_009588260.1| | 1e-54 | PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009 | |||||
| JMFN020E18 | Sequence | 550 | 002526 (7) | ref|XP_009588260.1| | 1e-54 | PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009 | |||||
| JMSF021L14 | Sequence | 547 | 002526 (7) | ref|XP_009588260.1| | 2e-54 | PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009 | 495 | 002526 (7) | ref|XP_009588260.1| | 2e-54 | PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009 |
This contig is upended
. : . : . : . : . : . :
JMFN020E18+ GAGAC
____________________________________________________________
consensus GAGAC
. : . : . : . : . : . :
JMFN013G22- ACGAAAAAGGATGCTGTAGTCTAGTGTGTGAAAACAATGCAACAAGATATTT
JMFN020E18+ AAATAAATACGAAAAAGGATGCTGTAGTCTAGTGTGTGAAAACAATGCAACAAGATATTT
JMSF021L14+ GAAAACAATGCAACAAGATATTT
JMFN008A02+ ACGAAAAAGGATGCTGTAGTCTAGTGTGTGAAAACAATGCAACAAGATATTT
JMFF008F21+ ACGAAAAAGGATGCTGTAGTCCATTGTGTGAAAACAATGCAACAAGATATTT
rJMFF008F21- GCTGTAGTCNATTGTGTGAAAACAATGCAACAAGATATTT
____________________________________________________________
consensus AAATAAATACGAAAAAGGATGCTGTAGTCTAGTGTGTGAAAACAATGCAACAAGATATTT
. : . : . : . : . : . :
JMFN013G22- AGAATGTAGAACAACAAAAAAGTTCTCTATAATTTCCATTCCTCTCCAATAATAATTAAT
JMFN020E18+ AGAATGTAGAACAACAAAAAAGTTCTCTATCATTTCCATTCCTCTCCAATAATAATTAAT
rJMSF021L14- AAGTTCTCTATCATTTCCATTCCTCTCCAATAATAATTAAT
JMSF021L14+ AGAATGTAGAACAACAAAAAAGTTCTCTATCATTTCCATTCCTCTCCAATAATAATTAAT
JMFN008A02+ AGAATGTAGAACAACAAAAAAGTTCTCTATCATTTCCATTCCTCTCCAATAATAATTAAT
JMFF008F21+ AGAATGTAGAACAACAAAAAAGTTCTCTATCATTTCCATTCCTCTCCAATAATAATTAAT
rJMFF008F21- AGAATGTAGAACAACAAAAAAGTTCTCTATCATTTCCATTCCTCTCCAATAATAATTAAT
____________________________________________________________
consensus AGAATGTAGAACAACAAAAAAGTTCTCTATCATTTCCATTCCTCTCCAATAATAATTAAT
. : . : . : . : . : . :
JMFN013G22- AACAACCTACTCATCATCATCATCGATGATCGATGTACCAAGGCCCTTCAATCCTTCGGG
JMFN020E18+ AACAACCTACTCATCATCATCATCGATGATCGATGTACCAAGGCCCTTCAATCCTTCGGG
rJMSF021L14- AACAACCTACTCATCATCATCATCGATGATCGATGTACCAAGGCCCTTCAATCCTTCGGG
JMSF021L14+ AACAACCTACTCATCATCATCATCGATGATCGATGTACCAAGGCCCTTCAATCCTTCGGG
JMFN008A02+ AACAACCTACTCATCATCATCATCGATGATCGATGTACCAAGGCCCTTCAATCCTTCGGG
JMFF008F21+ AACAACCTACTCATCATCATCATCGATGATCGATGTACCAAGGCCCTTCAATCCTTCGGG
rJMFF008F21- AACAACCTACTCATCATCATCATCGATGATCGATGTACCAAGGCCCTTCAATCCTTCGGG
____________________________________________________________
consensus AACAACCTACTCATCATCATCATCGATGATCGATGTACCAAGGCCCTTCAATCCTTCGGG
. : . : . : . : . : . :
JMFN013G22- TGGGATCTCAGCAACTGTAACAAGAGAATAGAGCTCCTCCTTTGCATCCTCATCGTCATT
JMFN020E18+ TGGGATCTCAGCAACTGTAACAAGAGAATAGAGCTCCTCCTTTGCATCCTCATCGTCATT
rJMSF021L14- TGGGATCTCAGCAACTGTAACAAGAGAATAGAGCTCCTCCTTTGCATCCTCATCGTCATT
JMSF021L14+ TGGGATCTCAGCAACTGTAACAAGAGAATAGAGCTCCTCCTTTGCATCCTCATCGTCATT
JMFN008A02+ TGGGATCTCAGCAACTGTAACAAGAGAATAGAGCTCCTCCTTTGCATCCTCATCGTCATT
JMFF008F21+ TGGGATCTCAGCAACTGTAACAAGAGAATAGAGCTCCTCCTTTGCATCCTCATCGTCATT
rJMFF008F21- TGGGATCTCAGCAACTGTAACAAGAGAATAGAGCTCCTCCTTTGCATCCTCATCGTCATT
____________________________________________________________
consensus TGGGATCTCAGCAACTGTAACAAGAGAATAGAGCTCCTCCTTTGCATCCTCATCGTCATT
. : . : . : . : . : . :
JMFN013G22- CCTCTTACGAGCAATGCGAACTCTAACACGCCTTGGGACGCTACGGATTCCTCTGCTCCA
JMFN020E18+ CCTCTTACGAGCAATGCGAACTCTAACACGCCTTGGGACGCTACGGATTCCTCTGCTCCA
rJMSF021L14- CCTCTTACGAGCAATGCGAACTCTAACACGCCTTGGGACGCTACGGATTCCTCTGCTCCA
JMSF021L14+ CCTCTTACGAGCAATGCGAACTCTAACACGCCTTGGGACGCTACGGATTCCTCTGCTCCA
JMFN008A02+ CCTCTTACGAGCAATGCGAACTCTAACACGCCTTGGGACGCTACGGATTCCTCTGCTCCA
JMFF008F21+ CCTCTTACGAGCAATGCGAACTCTAACACGCCTTGGGACGCTACGGATTCCTCTGCTCCA
rJMFF008F21- CCTCTTACGAGCAATGCGAACTCTAACACGCCTTGGGACGCTACGGATTCCTCTGCTCCA
____________________________________________________________
consensus CCTCTTACGAGCAATGCGAACTCTAACACGCCTTGGGACGCTACGGATTCCTCTGCTCCA
. : . : . : . : . : . :
JMFN013G22- GATATGCTTGTTCAGCTTCACATCCACTCTCACATCAGTTGTACCCATGGCTTTCTGTGC
JMFN020E18+ GATATGCTTGTTCAGCTTCACATCCACTCTCACATCAGTTGTACCCATGGCTTTCTGTGC
rJMSF021L14- GATATGCTTGTTCAGCTTCACATCCACTCTCACATCAGTTGTACCCATGGCTTTCTGTGC
JMSF021L14+ GATATGCTTGTTCAGCTTCACATCCACTCTCACATCAGTTGTACCCATGGCTTTCTGTGC
JMFN008A02+ GATATGCTTGTTCAGCTTCACATCCACTCTCACATCAGTTGTACCCATGGCTTTCTGTGC
JMFF008F21+ GATATGCTTGTTCAGCTTCACATCCACTCTCACATCAGTTGTACCCATGGCTTTCTGTGC
rJMFF008F21- GATATGCTTGTTCAGCTTCACATCCACTCTCACATCAGTTGTACCCATGGCTTTCTGTGC
____________________________________________________________
consensus GATATGCTTGTTCAGCTTCACATCCACTCTCACATCAGTTGTACCCATGGCTTTCTGTGC
. : . : . : . : . : . :
JMFN013G22- AAATTTCCTGATCTCCTTGATGGCGTTAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAG
JMFN020E18+ AAATTTCCTGATCTCCTTGATGGCGTTAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAG
rJMSF021L14- AAATTTCCTGATCTCCTTGATGGCGTTAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAG
JMSF021L14+ AAATTTCCTGATCTCCTTGATGGCGTTAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAG
JMFN008A02+ AAATTTCCTGATCTCCTTGATGGCGTTAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAG
JMFF008F21+ AAATTTCCTGATCTCCTTGATGGCGTTAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAG
rJMFF008F21- AAATTTCCTGATCTCCTTGATGGCGTTAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAG
____________________________________________________________
consensus AAATTTCCTGATCTCCTTGATGGCGTTAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAG
. : . : . : . : . : . :
JMFN013G22- GCGCTTGTGGAGGTTGATGGTGTACTCCCTGGTAACCACCTCCTCCTTCCTGGCTTTAGC
JMFN020E18+ GCGCTTGTGGAGGTTGATGGTGTACTCCCTGGTAACCACCTCCTCCTTCCTGGCTTTAGC
rJMSF021L14- GCGCTTGTGGAGGTTGATGGTGTACTCCCTGGTAACCACCTCCTCCTTCCTGGCTTTAGC
JMSF021L14+ GCGCTTGTGGAGGTTGATGGTGTACTCCCTGGTAACCACCTCCTCCTTCCTGGCTTTAGC
JMFN008A02+ GCGCTTGTGGAGGTTGATGGTGTACTCCCTGGTAACCACCTCCTCCTTCCTGGCTTTAGC
JMFF008F21+ GCGCTTGTGGAGGTTGATGGTGTACTCCCTGGTAACCACCTCCTCCTTCCTGGCTTTAGC
rJMFF008F21- GCGCTTGTGGAGGTTGATGGTGTACTCCCTGGTAACCACCTCCTCCTTCCTGGCTTTAGC
____________________________________________________________
consensus GCGCTTGTGGAGGTTGATGGTGTACTCCCTGGTAACCACCTCCTCCTTCCTGGCTTTAGC
. : . : . : . : . : . :
JMFN013G22- CTTCTCCGACATTTTCAATCTCTAC
JMFN020E18+ CTTCTCCGACATTTTCAATCTCTACTAGGGTTCGGA
rJMSF021L14- CTTCTCCGACATTTTCAATCTCTAC-----------TAGGGTTCGGACTTCGGAGCTAGG
JMSF021L14+ CTTCTCCGACATTTTCAATCTCTAC-----------TAGGGTTCGGACTTCGGAGCTAGG
JMFN008A02+ CTTCTCCGACATTTTCAATCTCTAC-----------TAGGGTTCGGACTTCGGAGCTAGG
JMFF008F21+ CTTCTCCGACATTTTCAATCTCTACCTGCATTCGAATAGGGTTCGGACTTCGGAGCTAGG
rJMFF008F21- CTTCTCCGACATTTTCAATCTCTACCTGCATTCGAATAGGGTTCGGACTTCGGAGCTAGG
____________________________________________________________
consensus CTTCTCCGACATTTTCAATCTCTAC--G--TTCG-ATAGGGTTCGGACTTCGGAGCTAGG
. : . : . : . : . : . :
rJMSF021L14- TAGAGATGGAGGCGCGTAGGAGCGATGGTTGAATAAAGAGACTC
JMSF021L14+ TAGAGATGGAGGCGCGTAGGAGCGATGGTTGAATAAAGAGACTC
JMFN008A02+ TAGAGATG
JMFF008F21+ TAGAGATGGAGGCGCGTAGGAGCGATGGTTGAATAAAGAGACTCAGAAAAAGAAGACTTC
rJMFF008F21- TAGAGATGGAGGCGCGTAGGAGCGATGGTTGAATAAAGAGACTCAGAAAAAGAAGACTTC
____________________________________________________________
consensus TAGAGATGGAGGCGCGTAGGAGCGATGGTTGAATAAAGAGACTCAGAAAAAGAAGACTTC