Contig 002524:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+                                        ATCTTGAACGNATTAAGAATGNAGCTGGAG
rJMFF007H06+                                                       AGAATGAAGCTGGAG
                      ____________________________________________________________
consensus                                           ATCTTGAACGNATTAAGAATGAAGCTGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          AAGATGATAGTGATGAGGAGGATGAAGA-TTTTGTTGCCGACAAGGATGATGAGGGCTCT
rJMFF007H06+          AAGATGATAGTGATGAGGAGGATGAAGATTTTTGTTGCCGACAAGGATGATGAGGGCTCT
                      ____________________________________________________________
consensus             AAGATGATAGTGATGAGGAGGATGAAGATTTTTGTTGCCGACAAGGATGATGAGGGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          CCTAGTGATGATTCTGGGGAAGAAGGATCTGATGCCAGTGACAGTGGTGGTGAGAAAGAG
rJMFF007H06+          CCTAGTGATGATTCTGGGGAAGAAGGATCTGATGCCAGTGACAGTGGTGGTGAGAAAGAG
                      ____________________________________________________________
consensus             CCTAGTGATGATTCTGGGGAAGAAGGATCTGATGCCAGTGACAGTGGTGGTGAGAAAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          AAACCTGCAAAAAAGAAGGCCAAGAAAGATCTGCCAACTTCTAAACCATCTACAAGCAGG
rJMFF007H06+          AAACCTGCAAAAAAGAAGGCCAAGAAAGATCTGCCAACTTCTAAACCATCTACAAGCAGG
                      ____________________________________________________________
consensus             AAACCTGCAAAAAAGAAGGCCAAGAAAGATCTGCCAACTTCTAAACCATCTACAAGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          AAAAAAGCTGACGATGACATGTCAAAGAAGAAGAAACAGAAGAAGAAGAAGGACCCAAAT
rJMFF007H06+          AAAAAAGCTGACGATGACATGTCAAAGAAGAAGAAACAGAAGAAGAAGAAGGACCCAAAT
                      ____________________________________________________________
consensus             AAAAAAGCTGACGATGACATGTCAAAGAAGAAGAAACAGAAGAAGAAGAAGGACCCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          GCTCCAAAGAGGGCAATTAGTGCTTTCATGTTCTTTTCAAATAATGAAAGAGAGAACGTG
rJMFF007H06+          GCTCCAAAGAGGGCAATTAGTGCTTTCATGTTCTTTTCAAGTAATGAAAGAGAGAACGTG
                      ____________________________________________________________
consensus             GCTCCAAAGAGGGCAATTAGTGCTTTCATGTTCTTTTCAAGTAATGAAAGAGAGAACGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          AAGAAAACAAATCCTGGAATCGCATTCACAGAGGTCGGAAAGGTTCTTGGAGATAAATGG
rJMFF007H06+          AAGAAAACAAATCCTGGAATCGCATTCACAGAGGTCGGAAAGGTTCTTGGAGATAAATGG
                      ____________________________________________________________
consensus             AAGAAAACAAATCCTGGAATCGCATTCACAGAGGTCGGAAAGGTTCTTGGAGATAAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          AATAAGATGTCAGCCGAGGAGAAACAGCCATACGAGGCAATGGCTCGGGCCGATAAGAAA
rJMFF007H06+          AATAAGATGTCAGCCGAGGAGAAACAGCCATACGAGGCAATGGCTCGGGCCGATAAGAAA
                      ____________________________________________________________
consensus             AATAAGATGTCAGCCGAGGAGAAACAGCCATACGAGGCAATGGCTCGGGCCGATAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          CGCTACAGTGATGAGATCAGTGACTACAAGAATGCACAACCCACAAACGTGGATTCGGGG
rJMFF007H06+          CGCTACAGTGATGAGATCAGTGACTACAAGAATGCACAACCCACAAACGTGGATTCGGGG
                      ____________________________________________________________
consensus             CGCTACAGTGATGAGATCAGTGACTACAAGAATGCACAACCCACAAACGTGGATTCGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          AATGATTCAGAGAGCTCTTAAGGGTCCAGTAGTTGTCAAAACTGAAGATGCAAATGTTTC
rJMFF007H06+          AATGATTCAGAGAGCTCTTAAGGGTCCAGTAGTTGTCAAAACTGAAGATGCAAATGTTTC
                      ____________________________________________________________
consensus             AATGATTCAGAGAGCTCTTAAGGGTCCAGTAGTTGTCAAAACTGAAGATGCAAATGTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          TAGTGTTGTTGCTGTGGGAAGAAAATTGGATTACCTATATGTTGTGTTATATGTGATGTA
rJMFF007H06+          TAGTGTTGTTGCTGTGGGAAGAAAATTGGATTACCTATATGTTGTGTTATATGTGATGTA
                      ____________________________________________________________
consensus             TAGTGTTGTTGCTGTGGGAAGAAAATTGGATTACCTATATGTTGTGTTATATGTGATGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          TTTCATTGGACAAGTTGAACGCTGGTGATGTAGTGTAGTTTAATGTAAGACAAGCCTCTA
rJMFF007H06+          TTTCATTGGACAAGTTGAACGCTGGTGATGTAGTGTAGTTTAATGTAAGACAAGCCTCTA
                      ____________________________________________________________
consensus             TTTCATTGGACAAGTTGAACGCTGGTGATGTAGTGTAGTTTAATGTAAGACAAGCCTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          TGGCTACGAAAATATGTATTTGTCTGATTAAACGTTCTAGGCTTACCAATTTAGAAGTTG
rJMFF007H06+          TGGCTACGAAAATATGTATTTGTCTGATTAAACGTTCTAGGCTTACCAATTTAGAAGTTG
                      ____________________________________________________________
consensus             TGGCTACGAAAATATGTATTTGTCTGATTAAACGTTCTAGGCTTACCAATTTAGAAGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C06+          GTTTTTTACCGGTGTGCTCACAGTAAATTT                              
rJMFF007H06+          GTTTTTTA-CGGTGTGCTCACAGTAAATTTATTAGTTATTACCAAGTGGAAACTTTACCC
                      ____________________________________________________________
consensus             GTTTTTTACCGGTGTGCTCACAGTAAATTTATTAGTTATTACCAAGTGGAAACTTTACCC