Contig 002521:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007C11Sequence589001695 (7)ref|XP_011074970.1|3e-90PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]760002521 (7)gb|KDO42760.1|4e-99hypothetical protein CISIN_1g014592mg [Citrus sinensis]
JMFF013M17Sequence586001695 (7)ref|XP_011074970.1|3e-90PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]787002521 (7)gb|KDO42760.1|2e-100hypothetical protein CISIN_1g014592mg [Citrus sinensis]
JMFF018E11Sequence581001695 (7)ref|XP_011074970.1|8e-89PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]796002521 (7)gb|KDO42760.1|5e-99hypothetical protein CISIN_1g014592mg [Citrus sinensis]
JMFF026M01Sequence591001695 (7)ref|XP_011074970.1|5e-90PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]636002521 (7)gb|KDO42760.1|4e-102hypothetical protein CISIN_1g014592mg [Citrus sinensis]
JMFF037H10Sequence644001695 (7)ref|XP_011074970.1|8e-99PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]773002521 (7)gb|KDO42760.1|4e-99hypothetical protein CISIN_1g014592mg [Citrus sinensis]
JMSF026B22Sequence646001695 (7)ref|XP_011074970.1|1e-113PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]744002521 (7)gb|KDO42760.1|1e-98hypothetical protein CISIN_1g014592mg [Citrus sinensis]
JMSF027B22Sequence446001695 (7)ref|XP_011074970.1|4e-68PREDICTED: elongation factor 1-gamma-like [Sesamum indicum]642002521 (7)gb|KDO42760.1|9e-90hypothetical protein CISIN_1g014592mg [Citrus sinensis]

Alignment

This contig is upended


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rJMSF026B22+                                                                    GA
rJMFF037H10+                                           AGAAAGAGGCTAAGAAAGAAGCTAAGA
                      ____________________________________________________________
consensus                                              AGAAAGAGGCTAAGAAAGAAGCTAAGA
 
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rJMSF026B22+          AAGNAGATCCAAAGCCTAAGGATGATGCAGATGNAGAAGAAGCGCCCAAGCCAAAGCCAA
rJMFF037H10+          AAGAAGATCCAAAGCNTAAGGATGATGCAGATGAAGAAGAAGCGCCCAAG------CCAA
rJMFF018E11+                                             GAAGAAGCGCCCAAG------CCAA
rJMFF013M17+                                             GAAGAAGCGCCCAAG------CCAA
rJMFF007C11+                                             GAAGAAGCGCCCAAG------CCAA
                      ____________________________________________________________
consensus             AAGAAGATCCAAAGCCTAAGGATGATGCAGATGAAGAAGAAGCGCCCAAG------CCAA
 
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rJMSF026B22+          AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMFF037H10+          AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMFF018E11+          AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMFF013M17+          AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMFF026M01+                                CTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMSF027B22+                                          AGCAAGNTGATTCTTGATGAGTNGAAGA
rJMFF007C11+          AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
                      ____________________________________________________________
consensus             AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
 
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rJMSF026B22+          GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF037H10+          GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF018E11+          GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF013M17+          GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF026M01+          GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMSF027B22+          GGCTATACTCCAACACCAAGACCAACNTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF007C11+          GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
                      ____________________________________________________________
consensus             GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
 
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rJMSF026B22+          TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMFF037H10+          TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMFF018E11+          TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMFF013M17+          TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMFF026M01+          TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMSF027B22+          TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTNCAATGATGAAAACA
rJMFF007C11+          TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
                      ____________________________________________________________
consensus             TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
 
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rJMSF026B22+          CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF037H10+          CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF018E11+          CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF013M17+          CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF026M01+          CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMSF027B22+          CTNTTTCCTTTNTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF007C11+          CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
                      ____________________________________________________________
consensus             CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
 
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rJMSF026B22+          GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF037H10+          GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF018E11+          GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF013M17+          GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF026M01+          GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMSF027B22+          GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF007C11+          GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
                      ____________________________________________________________
consensus             GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
 
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rJMSF026B22+          GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF037H10+          GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF018E11+          GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF013M17+          GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF026M01+          GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMSF027B22+          GNTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF007C11+          GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
                      ____________________________________________________________
consensus             GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
 
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rJMSF026B22+          TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGTTCAGAAGGAGCGGGTCA
rJMFF037H10+          TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
rJMFF018E11+          TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
rJMFF013M17+          TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
rJMFF026M01+          TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
rJMSF027B22+          NGGAGCTGTACGAGTNGAAGCAAGTAGACATCAACGATCCAGTTCAGAAGGAGCGGGTCA
rJMFF007C11+          TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
                      ____________________________________________________________
consensus             TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
 
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rJMSF026B22+          GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF037H10+          GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF018E11+          GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF013M17+          GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF026M01+          GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMSF027B22+          GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF007C11+          GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
                      ____________________________________________________________
consensus             GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
 
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rJMSF026B22+          TCAAGT                                                      
rJMFF037H10+          TCAAGT                                                      
rJMFF018E11+          TCAAGT                                                      
rJMFF013M17+          TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGTAGCT
rJMFF026M01+          TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGTAGCT
rJMSF027B22+          TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGNAGCT
rJMFF007C11+          TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGTAGCT
                      ____________________________________________________________
consensus             TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGTAGCT
 
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rJMFF013M17+          TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
rJMFF026M01+          TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
rJMSF027B22+          TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
rJMFF007C11+          TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
                      ____________________________________________________________
consensus             TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
 
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rJMFF013M17+          AT                                                          
rJMFF026M01+          ATTTGTAGCGGTTTTGAATTTTGACCTTTG-TTTTGGCAAGAATGTTATTTATTATCAA 
rJMSF027B22+          ATTNGTAGCGGTTCTGAATTTTGACCTTTGT                             
rJMFF007C11+          ATTTGTAGCGGTTTTGAATTTTGACCTTTGTTTTTGGCAAGAATGTTATTTATTATCAAT
                      ____________________________________________________________
consensus             ATTTGTAGCGGTTTTGAATTTTGACCTTTGTTTTTGGCAAGAATGTTATTTATTATCAAT