clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF007C11 | Sequence | 589 | 001695 (7) | ref|XP_011074970.1| | 3e-90 | PREDICTED: elongation factor 1-gamma-like [Sesamum indicum] | 760 | 002521 (7) | gb|KDO42760.1| | 4e-99 | hypothetical protein CISIN_1g014592mg [Citrus sinensis] |
JMFF013M17 | Sequence | 586 | 001695 (7) | ref|XP_011074970.1| | 3e-90 | PREDICTED: elongation factor 1-gamma-like [Sesamum indicum] | 787 | 002521 (7) | gb|KDO42760.1| | 2e-100 | hypothetical protein CISIN_1g014592mg [Citrus sinensis] |
JMFF018E11 | Sequence | 581 | 001695 (7) | ref|XP_011074970.1| | 8e-89 | PREDICTED: elongation factor 1-gamma-like [Sesamum indicum] | 796 | 002521 (7) | gb|KDO42760.1| | 5e-99 | hypothetical protein CISIN_1g014592mg [Citrus sinensis] |
JMFF026M01 | Sequence | 591 | 001695 (7) | ref|XP_011074970.1| | 5e-90 | PREDICTED: elongation factor 1-gamma-like [Sesamum indicum] | 636 | 002521 (7) | gb|KDO42760.1| | 4e-102 | hypothetical protein CISIN_1g014592mg [Citrus sinensis] |
JMFF037H10 | Sequence | 644 | 001695 (7) | ref|XP_011074970.1| | 8e-99 | PREDICTED: elongation factor 1-gamma-like [Sesamum indicum] | 773 | 002521 (7) | gb|KDO42760.1| | 4e-99 | hypothetical protein CISIN_1g014592mg [Citrus sinensis] |
JMSF026B22 | Sequence | 646 | 001695 (7) | ref|XP_011074970.1| | 1e-113 | PREDICTED: elongation factor 1-gamma-like [Sesamum indicum] | 744 | 002521 (7) | gb|KDO42760.1| | 1e-98 | hypothetical protein CISIN_1g014592mg [Citrus sinensis] |
JMSF027B22 | Sequence | 446 | 001695 (7) | ref|XP_011074970.1| | 4e-68 | PREDICTED: elongation factor 1-gamma-like [Sesamum indicum] | 642 | 002521 (7) | gb|KDO42760.1| | 9e-90 | hypothetical protein CISIN_1g014592mg [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMSF026B22+ GA
rJMFF037H10+ AGAAAGAGGCTAAGAAAGAAGCTAAGA
____________________________________________________________
consensus AGAAAGAGGCTAAGAAAGAAGCTAAGA
. : . : . : . : . : . :
rJMSF026B22+ AAGNAGATCCAAAGCCTAAGGATGATGCAGATGNAGAAGAAGCGCCCAAGCCAAAGCCAA
rJMFF037H10+ AAGAAGATCCAAAGCNTAAGGATGATGCAGATGAAGAAGAAGCGCCCAAG------CCAA
rJMFF018E11+ GAAGAAGCGCCCAAG------CCAA
rJMFF013M17+ GAAGAAGCGCCCAAG------CCAA
rJMFF007C11+ GAAGAAGCGCCCAAG------CCAA
____________________________________________________________
consensus AAGAAGATCCAAAGCCTAAGGATGATGCAGATGAAGAAGAAGCGCCCAAG------CCAA
. : . : . : . : . : . :
rJMSF026B22+ AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMFF037H10+ AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMFF018E11+ AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMFF013M17+ AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMFF026M01+ CTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
rJMSF027B22+ AGCAAGNTGATTCTTGATGAGTNGAAGA
rJMFF007C11+ AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
____________________________________________________________
consensus AGCCAAAAAATCCTCTTGATCTCTTGCCCCCAAGCAAGATGATTCTTGATGAGTGGAAGA
. : . : . : . : . : . :
rJMSF026B22+ GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF037H10+ GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF018E11+ GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF013M17+ GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF026M01+ GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMSF027B22+ GGCTATACTCCAACACCAAGACCAACNTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
rJMFF007C11+ GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
____________________________________________________________
consensus GGCTATACTCCAACACCAAGACCAACTTTCGTGAGGTTGCCATTAAAGGTTTTTGGGATA
. : . : . : . : . : . :
rJMSF026B22+ TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMFF037H10+ TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMFF018E11+ TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMFF013M17+ TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMFF026M01+ TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
rJMSF027B22+ TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTNCAATGATGAAAACA
rJMFF007C11+ TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
____________________________________________________________
consensus TGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAAAACA
. : . : . : . : . : . :
rJMSF026B22+ CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF037H10+ CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF018E11+ CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF013M17+ CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF026M01+ CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMSF027B22+ CTNTTTCCTTTNTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
rJMFF007C11+ CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
____________________________________________________________
consensus CTGTTTCCTTTGTAACGATGAACAAGGTGGGCGGTTTTCTGCAGAGGATGGATCTGGCAC
. : . : . : . : . : . :
rJMSF026B22+ GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF037H10+ GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF018E11+ GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF013M17+ GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF026M01+ GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMSF027B22+ GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
rJMFF007C11+ GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
____________________________________________________________
consensus GCAAGTATGCGTTTGGCAAGATGTTGGTGATTGGCTCAGAGCCCCCGTTCAAGGTGAAGG
. : . : . : . : . : . :
rJMSF026B22+ GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF037H10+ GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF018E11+ GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF013M17+ GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF026M01+ GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMSF027B22+ GNTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
rJMFF007C11+ GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
____________________________________________________________
consensus GGTTGTGGCTTTTCCGCGGGAAAGAAATTCCCAAGTTTGTTTTGGATGAATGTTATGACA
. : . : . : . : . : . :
rJMSF026B22+ TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGTTCAGAAGGAGCGGGTCA
rJMFF037H10+ TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
rJMFF018E11+ TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
rJMFF013M17+ TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
rJMFF026M01+ TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
rJMSF027B22+ NGGAGCTGTACGAGTNGAAGCAAGTAGACATCAACGATCCAGTTCAGAAGGAGCGGGTCA
rJMFF007C11+ TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
____________________________________________________________
consensus TGGAGCTGTACGAGTGGAAGCAAGTAGACATCAACGATCCAGCTCAGAAGGAGCGGGTCA
. : . : . : . : . : . :
rJMSF026B22+ GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF037H10+ GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF018E11+ GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF013M17+ GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF026M01+ GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMSF027B22+ GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
rJMFF007C11+ GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
____________________________________________________________
consensus GCCAGATGATTGAGGATGCCGAGCCTTTTGAAGGTGAGGCTCTTCTAGATGCAAAGTGTT
. : . : . : . : . : . :
rJMSF026B22+ TCAAGT
rJMFF037H10+ TCAAGT
rJMFF018E11+ TCAAGT
rJMFF013M17+ TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGTAGCT
rJMFF026M01+ TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGTAGCT
rJMSF027B22+ TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGNAGCT
rJMFF007C11+ TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGTAGCT
____________________________________________________________
consensus TCAAGTAAGCACATTGCCACATCGTATCATTCCCATAACTCGAGTTTCGAGTTTGTAGCT
. : . : . : . : . : . :
rJMFF013M17+ TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
rJMFF026M01+ TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
rJMSF027B22+ TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
rJMFF007C11+ TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
____________________________________________________________
consensus TACACACTGCAAATTTTGAATTTCCTCTGTTATGAACTATCCTTTTTCTTTACTGAGAGT
. : . : . : . : . : . :
rJMFF013M17+ AT
rJMFF026M01+ ATTTGTAGCGGTTTTGAATTTTGACCTTTG-TTTTGGCAAGAATGTTATTTATTATCAA
rJMSF027B22+ ATTNGTAGCGGTTCTGAATTTTGACCTTTGT
rJMFF007C11+ ATTTGTAGCGGTTTTGAATTTTGACCTTTGTTTTTGGCAAGAATGTTATTTATTATCAAT
____________________________________________________________
consensus ATTTGTAGCGGTTTTGAATTTTGACCTTTGTTTTTGGCAAGAATGTTATTTATTATCAAT