Contig 002513:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006A13Sequence431012189 (3)ref|XP_011008528.1|1e-78PREDICTED: probable serine/threonine-protein kinase At1g01540 isoform X3 [Popul661002513 (2)emb|CDP01314.1|5e-67unnamed protein product [Coffea canephora]
JMSF049J20Sequence680012189 (3)ref|XP_009771085.1|1e-59PREDICTED: probable serine/threonine-protein kinase At1g01540 [Nicotiana sylves768002513 (2)emb|CDP01314.1|3e-94unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+                  GAGAAGAGTTACANTACCACTCGAGTTATGGGAACATTTGGCTATGNTGCTC
                      ____________________________________________________________
consensus                     GAGAAGAGTTACANTACCACTCGAGTTATGGGAACATTTGGCTATGNTGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          CAGAATATGCCAGTACTGGCATGTTAAATGAAAGAAGTGATGTCTATAGTTTTGGAATTC
rJMFF006A13+                                                                     C
                      ____________________________________________________________
consensus             CAGAATATGCCAGTACTGGCATGTTAAATGAAAGAAGTGATGTCTATAGTTTTGGAATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          TTCTGATGGAGATAATTACTGGAAGGAATCCAGTGGATTATAGCCGCCCAGCTGGAGAGG
rJMFF006A13+          TTCTGATGGAGATAATTACTGGAAGGAATCCAGTGGATTATAGCCGCCCAGCTGGAGAGG
                      ____________________________________________________________
consensus             TTCTGATGGAGATAATTACTGGAAGGAATCCAGTGGATTATAGCCGCCCAGCTGGAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          TGAACCTAGTTGATTGGCTAAAAACCATGGTTTCAAACCGCAATTCCGACGGAGTTTTAG
rJMFF006A13+          TGAACCTAGTTGATTGGCTAAAAACCATGGTTTCAAACCGCAATTCCGACGGAGTTTTAG
                      ____________________________________________________________
consensus             TGAACCTAGTTGATTGGCTAAAAACCATGGTTTCAAACCGCAATTCCGACGGAGTTTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          ATCCCAAGTTAACTGAAAAACCTTCTTCAAGAGCATTGAAACGTGCCCTCTTGGTGGCTT
rJMFF006A13+          ATCCCAAGTTAACTGAAAAACCTTCTTCAAGAGCATTGAAACGTGCCCTCTTGGTGGCTT
                      ____________________________________________________________
consensus             ATCCCAAGTTAACTGAAAAACCTTCTTCAAGAGCATTGAAACGTGCCCTCTTGGTGGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          TACGCTGTGTAGACCCAAATGCACAAAAGAGGCCAAAGATGGGCCATGTAATACACATGC
rJMFF006A13+          TACGCTGTGTAGACCCAAATGCACAAAAGAGGCCAAAGATGGGCCATGTAATACACATGC
                      ____________________________________________________________
consensus             TACGCTGTGTAGACCCAAATGCACAAAAGAGGCCAAAGATGGGCCATGTAATACACATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          TTGAAGCTGATGATTTCCCCTTTCGAGATGACCAAAGAGCTGGAAGGGACAATGCACGTT
rJMFF006A13+          TTGAAGCTGATGATTTCCCCTTTCGAGATGACCAAAGAGCTGGAAGGGACAATGCACGTT
                      ____________________________________________________________
consensus             TTGAAGCTGATGATTTCCCCTTTCGAGATGACCAAAGAGCTGGAAGGGACAATGCACGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          CACATAATGACGGAGTGAAGGAGAGGGTCATGCAGAAGCGGATGATTGAATCAGGTGATA
rJMFF006A13+          CACATAATGACGGAGTGAAGGAGAGGGTCATGCAGAAGCGGATGATTGAATCAGGTGATA
                      ____________________________________________________________
consensus             CACATAATGACGGAGTGAAGGAGAGGGTCATGCAGAAGCGGATGATTGAATCAGGTGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          GTAGTGGTTACGAAAGTAGTGTCCAAACCAACAACACATCCTTATTGAGAAGACAAGAAA
rJMFF006A13+          GTAGTGGTTACGAAAGTAGTGTCCAAACCAACAACACATCCTTATTGAGAAGACAAGAAA
                      ____________________________________________________________
consensus             GTAGTGGTTACGAAAGTAGTGTCCAAACCAACAACACATCCTTATTGAGAAGACAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          CCGATGATGAGCAGTAGCCTCAGCATTCGTCTTATAAAGGTTGAACTGAAATGATGTTCT
rJMFF006A13+          CCGATGATGAGCAGTAGCCTCAGCATTCGTCTTATAAAGGTTGAACTGAAATGATGTTCT
                      ____________________________________________________________
consensus             CCGATGATGAGCAGTAGCCTCAGCATTCGTCTTATAAAGGTTGAACTGAAATGATGTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          TTGTTTCTGTAAATACCATTCGCCTTCACCTTTGCACTCTAGTTATACCTTTTGCTTGTG
rJMFF006A13+          TTGTTTCTGTAAATACCATTCGCCTTCACCTTTGCACTCTAGTTATACCTTTTGCTTGTG
                      ____________________________________________________________
consensus             TTGTTTCTGTAAATACCATTCGCCTTCACCTTTGCACTCTAGTTATACCTTTTGCTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          TAGGTTCCTGTAGTAACATTTGACGCTAGGAGTTTACTTGTGATCAATTTTGCTGCTTCC
rJMFF006A13+          TAGGTTCCTGTAGTAACATTTGACGCTAGGAGTTTACTTGTGATCAATTTTGCTGCTTCC
                      ____________________________________________________________
consensus             TAGGTTCCTGTAGTAACATTTGACGCTAGGAGTTTACTTGTGATCAATTTTGCTGCTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049J20+          CCATACCCCCAAAAACTCCATGTAGTTATTTCTCTGAACAGCGCTCTAGAACAGAG    
rJMFF006A13+          CCATACCCCCAAAAACTCCATGTAGTTATTTCTCTGAACAGCGCTCTAGAACAGAGCTAT
                      ____________________________________________________________
consensus             CCATACCCCCAAAAACTCCATGTAGTTATTTCTCTGAACAGCGCTCTAGAACAGAGCTAT