Contig 002508:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004J02Sequence536009194 (4)ref|XP_008444350.1|122PREDICTED: uncharacterized protein LOC103487703 [Cucumis melo]678002508 (2)ref|XP_009627407.1|168PREDICTED: uncharacterized protein LOC104117961 [Nicotiana tomentosiformis] ref|
JMSF005L22Sequence333009194 (4)421002508 (2)ref|XP_006438327.1|1e-24hypothetical protein CICLE_v10032113mg [Citrus clementina] ref|XP_006483900.1| P

Alignment

This contig is upended


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rJMFF004J02+ CCAATGATTACAAGTTAAA
                      ____________________________________________________________
consensus CCAATGATTACAAGTTAAA
 
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rJMFF004J02+ TTTTCTGGTCATTTGCATGCATTCTGTAAATGCTGTTTGCCTTTTGGGCGATGTCATGTT
                      ____________________________________________________________
consensus TTTTCTGGTCATTTGCATGCATTCTGTAAATGCTGTTTGCCTTTTGGGCGATGTCATGTT
 
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rJMSF005L22+ GCATATTTCATCCTTNGGACATGCGTATT
rJMFF004J02+ AAATCGCCTCCGATTCCCTTTCTTCCGAATTGCATATTTCATCCTTTGGACATGCGTATT
                      ____________________________________________________________
consensus AAATCGCCTCCGATTCCCTTTCTTCCGAATTGCATATTTCATCCTTTGGACATGCGTATT
 
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rJMSF005L22+ NGTCACTTTCCAGTGGATCATCCATATGTGCGTTTCACTATGGTGGCCTTATTCATTTCT
rJMFF004J02+ TGTCACTTTCCAGTGGATCATCCATATGTGCGTTTCACTATGGTGGCCTTATTCATTTCT
                      ____________________________________________________________
consensus TGTCACTTTCCAGTGGATCATCCATATGTGCGTTTCACTATGGTGGCCTTATTCATTTCT
 
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rJMSF005L22+ TGATTTGTCATCTCAATATGCTCCCTTATGGTATTTCGGAGTTGGGGCTCTTCATGTTCC
rJMFF004J02+ TGATTTGTCATCTCAATATGCTCCCTTATGGTATTTCGGAGTTGGGGCTCTTCATGTTCC
                      ____________________________________________________________
consensus TGATTTGTCATCTCAATATGCTCCCTTATGGTATTTCGGAGTTGGGGCTCTTCATGTTCC
 
. : . : . : . : . : . :
rJMSF005L22+ GTGCTATGTTATCTTCGCACTTATCATAAAAATGAAGAAGTATTTCTTGTCGAGATTTGT
rJMFF004J02+ GTGCTATGTTATCTTCGCACTTATCATAAAAATGAAGAAGTATTTCTTGTCGAGATTTGT
                      ____________________________________________________________
consensus GTGCTATGTTATCTTCGCACTTATCATAAAAATGAAGAAGTATTTCTTGTCGAGATTTGT
 
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rJMSF005L22+ CCAGACTCCTTAGGAATATAAGGCTGAGAAAGATGGGAAGGCTATGAAATATGATTCTTA
rJMFF004J02+ CCAGACTCCTTAGGAATATAAGGCTGAGAAAGATGGGAAGGCTATGAAATATGATTCTTA
                      ____________________________________________________________
consensus CCAGACTCCTTAGGAATATAAGGCTGAGAAAGATGGGAAGGCTATGAAATATGATTCTTA
 
. : . : . : . : . : . :
rJMSF005L22+ GTCCAAATAGATTATCACNGTACTTGATTTTCAGAAGTATTTTGGTGATAATATAGTCCC
rJMFF004J02+ GTCCAAATAGATTATCACTGTACTTGATTTTCAGAAGTATTTTGGTGATAATATAGTCCC
                      ____________________________________________________________
consensus GTCCAAATAGATTATCACTGTACTTGATTTTCAGAAGTATTTTGGTGATAATATAGTCCC
 
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rJMSF005L22+ ATAAAAGGAATATATGAATTGTTCATTTGCAAATTGTGGGACATGTNGGAAAACCATGTG
rJMFF004J02+ ATAAAAGGAATATATGAATTGTTCATTTGCAAATTGTGGGACATGTTGGAAAA-CATGTG
                      ____________________________________________________________
consensus ATAAAAGGAATATATGAATTGTTCATTTGCAAATTGTGGGACATGTTGGAAAACCATGTG
 
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rJMSF005L22+ CATGGGATACAGCAGTTGATGCACAAAGCTTT
rJMFF004J02+ CATGGGATACAGCAGTTGATGCACAAAGCTTTGTTACCTGAAACTGGCAAAAAGTTGAAA
                      ____________________________________________________________
consensus CATGGGATACAGCAGTTGATGCACAAAGCTTTGTTACCTGAAACTGGCAAAAAGTTGAAA
 
. : . : . : . : . : . :
rJMFF004J02+ ACATGGCAGAAATTTAGCATCAAATTCAGATTCTGGTTCGTCTTTATATGAATGATTTGC
                      ____________________________________________________________
consensus ACATGGCAGAAATTTAGCATCAAATTCAGATTCTGGTTCGTCTTTATATGAATGATTTGC
 
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rJMFF004J02+ CCACTTGGTAGAATGTTTGTTTTGAGATTTAAGAACACTTACATATATTAAGGAAAACAA
                      ____________________________________________________________
consensus CCACTTGGTAGAATGTTTGTTTTGAGATTTAAGAACACTTACATATATTAAGGAAAACAA