| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001M10 | Sequence | 461 | 002498 (5) | emb|CDP13862.1| | 6e-50 | unnamed protein product [Coffea canephora] | 724 | 002498 (5) | ref|XP_009599437.1| | 3e-89 | PREDICTED: superoxide dismutase [Fe], chloroplastic isoform X2 [Nicotiana tomen |
| JMSF043C19 | Sequence | 647 | 002498 (5) | ref|XP_009773810.1| | 7e-80 | PREDICTED: superoxide dismutase [Fe], chloroplastic [Nicotiana sylvestris] | 807 | 002498 (5) | ref|XP_009773810.1| | 2e-125 | PREDICTED: superoxide dismutase [Fe], chloroplastic [Nicotiana sylvestris] |
| JMSF044C19 | Sequence | 787 | 002498 (5) | ref|XP_009773810.1| | 3e-117 | PREDICTED: superoxide dismutase [Fe], chloroplastic [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF001M10- GGTTCCGTTTAGCAGACAAGACACCATTTTTCCATTCTCTCGACAA
____________________________________________________________
consensus GGTTCCGTTTAGCAGACAAGACACCATTTTTCCATTCTCTCGACAA
. : . : . : . : . : . :
JMFF001M10- ACACCCAGATGATGGCGGCTACAGCTTCTGCAAATTCCCTTTCGTCTGCCTTCTTTTCTC
____________________________________________________________
consensus ACACCCAGATGATGGCGGCTACAGCTTCTGCAAATTCCCTTTCGTCTGCCTTCTTTTCTC
. : . : . : . : . : . :
JMFF001M10- GCCAAAGTTTTCCGGTGAGCTCAAACCATAACTTCAAATGTGGAAAGATAGAGAAAAAGT
____________________________________________________________
consensus GCCAAAGTTTTCCGGTGAGCTCAAACCATAACTTCAAATGTGGAAAGATAGAGAAAAAGT
. : . : . : . : . : . :
JMFF001M10- TCACAAGAGGTGGGTTCCCAAAAATAAGAGCAGCACTTGAGCTAAAGCCTCCACCATATC
JMSF043C19- AGCACTTGAGCTAAAGCCTCCACCATATC
rJMSF043C19+ TCCACCATATC
____________________________________________________________
consensus TCACAAGAGGTGGGTTCCCAAAAATAAGAGCAGCACTTGAGCTAAAGCCTCCACCATATC
. : . : . : . : . : . :
JMFF001M10- CAATGAATGCATTAGAGCCTCATATGAGTCGCCAAACATTTGAATACCACTGGGGAAAAC
JMSF043C19- CAATGAATGCATTAGAGCCTCATATGAGTCGCCAAACATTTGAATACCACTGGGGAAAAC
rJMSF043C19+ CAATGAATGCATTAGAGCCTCATATGAGTCGCCAAACATTTGAATACCACTGGGGAAAAC
rJMSF044C19+ GAATGCATTAGAGCCTCATATGAGTCGCCAAACATTTGAATACCACTGGGGAAAAC
____________________________________________________________
consensus CAATGAATGCATTAGAGCCTCATATGAGTCGCCAAACATTTGAATACCACTGGGGAAAAC
. : . : . : . : . : . :
JMFF001M10- ATCACAGGGCTTATGTCGACAACTTAAACAAGCAGATCGTAGGAACCGAACTGGATGGGG
JMSF043C19- ATCACAGGGCTTATGTCGACAACTTAAACAAGCAGATCGTAGGAACCGAACTGGATGGGG
rJMSF043C19+ ATCACAGGGCTTATGTCGACAACTTAAACAAGCAGATCGTAGGAACCGAACTGGATGGGG
rJMSF044C19+ ATCACAGGGNTTATGTCGACAACTTAAACAAGCAGATCGTAGGAACCGAACTGGATGGGG
rJMFF001M10+ GGGG
____________________________________________________________
consensus ATCACAGGGCTTATGTCGACAACTTAAACAAGCAGATCGTAGGAACCGAACTGGATGGGG
. : . : . : . : . : . :
JMFF001M10- TATCATTAGAAGACATTGTATTGGCCACATACAACAATGGTGATTTGCTTCCTGCATTCA
JMSF043C19- TATCATTAGAAGACATTGTATTGGCCACATACAACAATGGTGATTTGCTTCCTGCATTCA
rJMSF043C19+ TATCATTAGAAGACATTGTATTGGCCACATACAACAATGGTGATTTGCTTCCTGCATTCA
rJMSF044C19+ TATCATTAGAAGACATTGTATTGGCCACATACAACAATGGTGATTTGCTTCCTGCATTCA
rJMFF001M10+ TATCATTAGAAGACATTGTATTGGCCACATACAACAATGGTGATTTGCTTCCTGCATTCA
____________________________________________________________
consensus TATCATTAGAAGACATTGTATTGGCCACATACAACAATGGTGATTTGCTTCCTGCATTCA
. : . : . : . : . : . :
JMFF001M10- ACAATGCTGCACAGGCTTGGAATCACGCTTTCTTCTGGGAGTCTATGAAACCAGG
JMSF043C19- ACAATGCTGCACAGGCTTGGAATCACGCTTTCTTCTGGGAGTCTATGAAACCAGGTGGAG
rJMSF043C19+ ACAATGCTGCACAGGCTTGGAATCACGCTTTCTTCTGGGAGTCTATGAAACCAGGTGGAG
rJMSF044C19+ ACAATGCTGCACAGGCTTGGAATCACGCTTTCTTCTGGGAGTCTATGAAACCAGGTGGAG
rJMFF001M10+ ACAATGCTGCACAGGCTTGGAATCACGCTTTCTTCTGGGAGTCTATGAAACCAGGTGGAG
____________________________________________________________
consensus ACAATGCTGCACAGGCTTGGAATCACGCTTTCTTCTGGGAGTCTATGAAACCAGGTGGAG
. : . : . : . : . : . :
JMSF043C19- GAGGGGAGCCATCAGGTGAACTTCTAGAGCTAATCAATAGAGATTTCGGTTCCTTTGAGA
rJMSF043C19+ GAGGGGAGCCATCAGGTGAACTTCTAGAGCTAATCAATAGAGATTTCGGTTCCTTTGAGA
rJMSF044C19+ GAGGGGAGCCATCAGGTGAACTTCTAGAGCTAATCAATAGAGATTTCGGTTCCTTTGAGA
rJMFF001M10+ GAGGGGAGCCATCAGGTGAACTTCTAGAGCTAATCAATAGAGATTTCGGTTCCTTTGAGA
____________________________________________________________
consensus GAGGGGAGCCATCAGGTGAACTTCTAGAGCTAATCAATAGAGATTTCGGTTCCTTTGAGA
. : . : . : . : . : . :
JMSF043C19- CATTTGTAAAGGAGTTCAAGGCTGCTGCGGCAACACAATTTGGTTCTGGCTGGGCATGGC
rJMSF043C19+ CATTTGTAAAGGAGTTCAAGGCTGCTGCGGCAACACAATTTGGTTCTGGCTGGGCATGGC
rJMSF044C19+ CATTNGTAAAGGAGTTCAAGGCTGCTGCGGCAACACAATTTGGTTCTGGCTGGGCATGGC
rJMFF001M10+ CATTTGTAAAGGAGTTCAAGGCTGCTGCGGCAACACAATTTTGTTCTGGCTGGGCATGGC
____________________________________________________________
consensus CATTTGTAAAGGAGTTCAAGGCTGCTGCGGCAACACAATTTGGTTCTGGCTGGGCATGGC
. : . : . : . : . : . :
JMSF043C19- TTGCATACAAGGCCAATAAACTTAATGTGGGAAATGCAGTAAATCCCGTTCCATCAGACG
rJMSF043C19+ TTGCATACAAGGCCAATAAACTTAATGTGGGAAATGCAGTAAATCCCGTTCCATCAGACG
rJMSF044C19+ TTGCATACAAGGCCAATAAACTTAATGTGGGAAATGCAGTAAATCCCGTTCCATCAGACG
rJMFF001M10+ TTGCATACAAGGCCAATAAACTTAATGTGGGAAATGCAGTAAATCCCGTTCCATCAGACG
____________________________________________________________
consensus TTGCATACAAGGCCAATAAACTTAATGTGGGAAATGCAGTAAATCCCGTTCCATCAGACG
. : . : . : . : . : . :
rJMSF043C19+ AAGACAAGAAGCTTGTAATTGTTAAAACTCCCAATGCTGTAAACCCTCTTGTCTGGGATT
rJMSF044C19+ AAGACAAGAAGCTTGTAATTGTTAAAACTCCCAATGCTGTAAACCCTCTTGTCTGGGATT
rJMFF001M10+ GAGACAAGAAGCTTGTAATTGTTAAAACTCCCAATGCTGTAAACCCTCTTGTCTGGGATT
____________________________________________________________
consensus AAGACAAGAAGCTTGTAATTGTTAAAACTCCCAATGCTGTAAACCCTCTTGTCTGGGATT
. : . : . : . : . : . :
rJMSF043C19+ ACTCTCCACTCCTAACAATAGATGTTTGGGAGCATGCTTACTACCTAGACTACCAGAATC
rJMSF044C19+ ACTCTCCACTCCTAACAATAGATGTTTGGGAGCATGCTTACTACCTAGACTACCAGAATC
rJMFF001M10+ ACTCTCCACTCCTAACAATAGATGTTTGGGAGCATGCTTACTACCTAGACTACCAGAATC
____________________________________________________________
consensus ACTCTCCACTCCTAACAATAGATGTTTGGGAGCATGCTTACTACCTAGACTACCAGAATC
. : . : . : . : . : . :
rJMSF043C19+ GACGCCCAGACTACATTTCTATTTTTATGGAGAACCTTGTATCGTGGGAAGCAGTCAGCA
rJMSF044C19+ GACGCCCAGACTACATTTCTATTTTTATGGAGAACCTTGTATCGTGGGAAGCAGTCAGCA
rJMFF001M10+ GACGCCCAGACTACATTTCTATTTTTATGGAGAACCTTGTATCGTGGGAAGCAGTCAGCA
____________________________________________________________
consensus GACGCCCAGACTACATTTCTATTTTTATGGAGAACCTTGTATCGTGGGAAGCAGTCAGCA
. : . : . : . : . : . :
rJMSF043C19+ GTCGGTTAGAGGCAGCAAAGGCT
rJMSF044C19+ GTCGGTTAGAGGCAGCAAAGGCT
rJMFF001M10+ GTCGGTTAGAGGCAGCAAAGGCTCGGGCTGTTGAGCGCGAGCAAGAAGAGATAAGAAGGC
____________________________________________________________
consensus GTCGGTTAGAGGCAGCAAAGGCTCGGGCTGTTGAGCGCGAGCAAGAAGAGATAAGAAGGC
. : . : . : . : . : . :
rJMFF001M10+ AGAAGGAAGAAGAAGAGGGTGGACTAACAAGCACTGACCCTAGTGAGGTTTTTGTTGAAA
____________________________________________________________
consensus AGAAGGAAGAAGAAGAGGGTGGACTAACAAGCACTGACCCTAGTGAGGTTTTTGTTGAAA
. : . : . : . : . : . :
rJMFF001M10+ GTGAAACAGATTCTGAAGCTGAATCTGAATGATTTTTTGTTCTATTTCAGTAACACAGAT
____________________________________________________________
consensus GTGAAACAGATTCTGAAGCTGAATCTGAATGATTTTTTGTTCTATTTCAGTAACACAGAT
. : . : . : . : . : . :
rJMFF001M10+ GTAATGCTTTTTTTGGAATCTGATGCCAAGGTGGTTGTGCAAGGCTTTGTCTCAAACTAT
____________________________________________________________
consensus GTAATGCTTTTTTTGGAATCTGATGCCAAGGTGGTTGTGCAAGGCTTTGTCTCAAACTAT