Contig 002494:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS100G04Sequence612002494 (6)ref|XP_009622889.1|2e-67PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana tomentosifor
JMSF012M02Sequence256002494 (6)ref|XP_009794148.1|2e-23PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana sylvestris]
JMSF037B18Sequence681002494 (6)ref|XP_009622889.1|4e-79PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana tomentosifor735014043 (3)ref|XP_006358509.1|5e-80PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like [Solanum tuberosum
JMSF046D15Sequence708002494 (6)ref|XP_009622889.1|3e-83PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana tomentosifor755014043 (3)ref|XP_006358509.1|9e-85PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like [Solanum tuberosum
JMSF047B11Sequence651002494 (6)ref|XP_009622889.1|1e-90PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana tomentosifor749018337ref|XP_006358509.1|3e-76PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like [Solanum tuberosum
JMSF052O10Sequence574002494 (6)ref|XP_009794148.1|1e-27PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF047B11+                                                              TCTGGAAGA
                      ____________________________________________________________
consensus                                                                TCTGGAAGA
 
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JMSF047B11+           TCTACCTCAAATGTAGCAGTAGCAGGATTAGCATTTGAAACTTGGTGTTCATTTACTTTG
                      ____________________________________________________________
consensus             TCTACCTCAAATGTAGCAGTAGCAGGATTAGCATTTGAAACTTGGTGTTCATTTACTTTG
 
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JMSF047B11+           GTTGCTGCCTTTGCAGAGCTCTTTTTCCCAATATATGTTGTGATGACTTCACCCAGTTCA
JMSF037B18+                                         ATATATGTTGCGATGACTTCACCAAGAACA
JMSF046D15+             TGCTGCCTTTGTGGAGCCCTTTTTCCCTATATATGTTGCGATGACTTCACCAAGAACA
                      ____________________________________________________________
consensus             GTTGCTGCCTTTGTGGAGCTCTTTTTCCCTATATATGTTGCGATGACTTCACCAAGAACA
 
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JMSF047B11+           GCTTCATATGCTTCAAATATTGAGTTGAACCACCTTACCAGATTTTGGAATTTCTTTGAT
JMSF037B18+           GCTTCATATGCTACAAATATTGTGTTGAACCACCTTACCAGATTTTGGTATTTCTTTGAT
JMFS100G04+                                            CTTACCAGATTTTGGTATTTCTTTGAT
JMSF046D15+           GCTTCATATGCTACAAATATTGTGTTGAACCACCTTACCAGATTTTGGTATTTCTTTGAT
                      ____________________________________________________________
consensus             GCTTCATATGCTACAAATATTGTGTTGAACCACCTTACCAGATTTTGGTATTTCTTTGAT
 
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JMSF047B11+           CTTCTGAGGCTTTCCCATCTCGGCCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
JMSF037B18+           CTTCTAAGACTTTCCCATCTCTGTCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
JMFS100G04+           CTTCTAAGACTTTCCCATCTCTGTCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
JMSF046D15+           CTTCTAAGACTTTCCCATCTCTGTCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
                      ____________________________________________________________
consensus             CTTCTAAGACTTTCCCATCTCTGTCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
 
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JMSF047B11+           GCAATTGAAAGGCTGTTCCCAACCAAAAATGTGCGGTGAAGCAGAAATTGATCCACATAA
JMSF037B18+           GCAATTGAAAGACTATTCCCAACCAAAAATGTGTGCTGCATCAGAAATTGGTCCACATAA
JMFS100G04+           GCAATTGAAAGACTATTCCCAACCAAAAATGTGTGCTGCATCAGAAATTGGTCCACATAA
JMSF046D15+           GCAATTGAAAGACTATTCCCAACCAAAAATGTGTGCTGCATCAGAAATTGGTCCACATAA
                      ____________________________________________________________
consensus             GCAATTGAAAGACTATTCCCAACCAAAAATGTGTGCTGCATCAGAAATTGGTCCACATAA
 
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JMSF047B11+           CCACATGCAGCCTGAAATTCAGAGCCAGATGCAAAAATAGGAGCATACTCTAGCCATTCA
JMSF037B18+           TTGCATGCTCCCTGAAATTCAGAGCCAGATGCAAAAGTAGGGGCATACTCCAGCCATTCA
JMFS100G04+           TTGCATGCTCCCTGAAATTCAGAGCCAGATGCAAAAGTAGGGGCATACTCCAGCCATTCA
JMSF046D15+           TTGCATGCTCCCTGAAATTCAGAGCCAGATGCAAAAGTAGGGGCATACTCCAGCCATTCA
                      ____________________________________________________________
consensus             TTGCATGCTCCCTGAAATTCAGAGCCAGATGCAAAAGTAGGGGCATACTCCAGCCATTCA
 
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JMSF047B11+           TCTATCTGGCTAGACTCAAAGGAATCCCGCTGGTAGAATTCTGGAATCCTTGCTACACGA
JMSF037B18+           TCTATCTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
JMFS100G04+           TCTATCTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
JMSF012M02+                                                           CTTGCTACACGA
JMSF046D15+           TCTATCTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
JMSF052O10+                CTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
                      ____________________________________________________________
consensus             TCTATCTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
 
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JMSF047B11+           CCAATATACCTTAAGAGAACAAAAGTTCCCTGCAACTTTGATCCATTAGGTAAAAGAATC
JMSF037B18+           CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
JMFS100G04+           CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
JMSF012M02+           CCAATATACCTTAAGAGAACAAAAGTTCCCTGCAACTTTGATCCATTAGGTAAAAGAATC
JMSF046D15+           CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
JMSF052O10+           CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
                      ____________________________________________________________
consensus             CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
 
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JMSF047B11+           GTGGGCGGAGAACCAGGGCTGAGGGTTGCATCAGTGGAAAAAGAAACTCCAGAGATTTTT
JMSF037B18+           GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
JMFS100G04+           GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
JMSF012M02+           GTGGGCGGAGAACCAGGGCTGAGGGTTGCATCAGTGGAAAAAGAAACTCCAGAGATTTTT
JMSF046D15+           GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
JMSF052O10+           GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
                      ____________________________________________________________
consensus             GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
 
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JMSF047B11+           GCAGCAACAAAGATGGCCAGTGGAGGACTATCAGATGAAAATAAGATCTTGATTTCCAT 
JMSF037B18+           GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
JMFS100G04+           GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
JMSF012M02+           GCAGCAACAAAGATGGCCAGTGGAGGACTATCAGATGAAAATAAGATCTTGATTTCCAT 
JMSF046D15+           GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
JMSF052O10+           GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
                      ____________________________________________________________
consensus             GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
 
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JMSF037B18+           GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
JMFS100G04+           GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
JMSF046D15+           GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
JMSF052O10+           GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
                      ____________________________________________________________
consensus             GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
 
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JMSF037B18+           GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
JMFS100G04+           GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
JMSF046D15+           GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
JMSF052O10+           GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
                      ____________________________________________________________
consensus             GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
 
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JMSF037B18+           GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCC                
JMFS100G04+           GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCC                
JMSF046D15+           GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCC                
JMSF052O10+           GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCCGGTGGTTTCTTCTTTC
                      ____________________________________________________________
consensus             GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCCGGTGGTTTCTTCTTTC