Contig 002494:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS100G04Sequence612002494 (6)ref|XP_009622889.1|2e-67PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana tomentosifor
JMSF012M02Sequence256002494 (6)ref|XP_009794148.1|2e-23PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana sylvestris]
JMSF037B18Sequence681002494 (6)ref|XP_009622889.1|4e-79PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana tomentosifor735014043 (3)ref|XP_006358509.1|5e-80PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like [Solanum tuberosum
JMSF046D15Sequence708002494 (6)ref|XP_009622889.1|3e-83PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana tomentosifor755014043 (3)ref|XP_006358509.1|9e-85PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like [Solanum tuberosum
JMSF047B11Sequence651002494 (6)ref|XP_009622889.1|1e-90PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana tomentosifor749018337ref|XP_006358509.1|3e-76PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like [Solanum tuberosum
JMSF052O10Sequence574002494 (6)ref|XP_009794148.1|1e-27PREDICTED: probable glutamate--tRNA ligase, cytoplasmic [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047B11+ TCTGGAAGA
                      ____________________________________________________________
consensus TCTGGAAGA
 
. : . : . : . : . : . :
JMSF047B11+ TCTACCTCAAATGTAGCAGTAGCAGGATTAGCATTTGAAACTTGGTGTTCATTTACTTTG
                      ____________________________________________________________
consensus TCTACCTCAAATGTAGCAGTAGCAGGATTAGCATTTGAAACTTGGTGTTCATTTACTTTG
 
. : . : . : . : . : . :
JMSF047B11+ GTTGCTGCCTTTGCAGAGCTCTTTTTCCCAATATATGTTGTGATGACTTCACCCAGTTCA
JMSF037B18+ ATATATGTTGCGATGACTTCACCAAGAACA
JMSF046D15+ TGCTGCCTTTGTGGAGCCCTTTTTCCCTATATATGTTGCGATGACTTCACCAAGAACA
                      ____________________________________________________________
consensus GTTGCTGCCTTTGTGGAGCTCTTTTTCCCTATATATGTTGCGATGACTTCACCAAGAACA
 
. : . : . : . : . : . :
JMSF047B11+ GCTTCATATGCTTCAAATATTGAGTTGAACCACCTTACCAGATTTTGGAATTTCTTTGAT
JMSF037B18+ GCTTCATATGCTACAAATATTGTGTTGAACCACCTTACCAGATTTTGGTATTTCTTTGAT
JMFS100G04+ CTTACCAGATTTTGGTATTTCTTTGAT
JMSF046D15+ GCTTCATATGCTACAAATATTGTGTTGAACCACCTTACCAGATTTTGGTATTTCTTTGAT
                      ____________________________________________________________
consensus GCTTCATATGCTACAAATATTGTGTTGAACCACCTTACCAGATTTTGGTATTTCTTTGAT
 
. : . : . : . : . : . :
JMSF047B11+ CTTCTGAGGCTTTCCCATCTCGGCCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
JMSF037B18+ CTTCTAAGACTTTCCCATCTCTGTCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
JMFS100G04+ CTTCTAAGACTTTCCCATCTCTGTCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
JMSF046D15+ CTTCTAAGACTTTCCCATCTCTGTCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
                      ____________________________________________________________
consensus CTTCTAAGACTTTCCCATCTCTGTCCAGCTCCTGCAAGACCAGACCAGACAGCAATATCT
 
. : . : . : . : . : . :
JMSF047B11+ GCAATTGAAAGGCTGTTCCCAACCAAAAATGTGCGGTGAAGCAGAAATTGATCCACATAA
JMSF037B18+ GCAATTGAAAGACTATTCCCAACCAAAAATGTGTGCTGCATCAGAAATTGGTCCACATAA
JMFS100G04+ GCAATTGAAAGACTATTCCCAACCAAAAATGTGTGCTGCATCAGAAATTGGTCCACATAA
JMSF046D15+ GCAATTGAAAGACTATTCCCAACCAAAAATGTGTGCTGCATCAGAAATTGGTCCACATAA
                      ____________________________________________________________
consensus GCAATTGAAAGACTATTCCCAACCAAAAATGTGTGCTGCATCAGAAATTGGTCCACATAA
 
. : . : . : . : . : . :
JMSF047B11+ CCACATGCAGCCTGAAATTCAGAGCCAGATGCAAAAATAGGAGCATACTCTAGCCATTCA
JMSF037B18+ TTGCATGCTCCCTGAAATTCAGAGCCAGATGCAAAAGTAGGGGCATACTCCAGCCATTCA
JMFS100G04+ TTGCATGCTCCCTGAAATTCAGAGCCAGATGCAAAAGTAGGGGCATACTCCAGCCATTCA
JMSF046D15+ TTGCATGCTCCCTGAAATTCAGAGCCAGATGCAAAAGTAGGGGCATACTCCAGCCATTCA
                      ____________________________________________________________
consensus TTGCATGCTCCCTGAAATTCAGAGCCAGATGCAAAAGTAGGGGCATACTCCAGCCATTCA
 
. : . : . : . : . : . :
JMSF047B11+ TCTATCTGGCTAGACTCAAAGGAATCCCGCTGGTAGAATTCTGGAATCCTTGCTACACGA
JMSF037B18+ TCTATCTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
JMFS100G04+ TCTATCTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
JMSF012M02+ CTTGCTACACGA
JMSF046D15+ TCTATCTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
JMSF052O10+ CTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
                      ____________________________________________________________
consensus TCTATCTGGCTAGACTCAAACGAATCCCGCCGGTATAATCCAGGAGTGCTTGCTACACGG
 
. : . : . : . : . : . :
JMSF047B11+ CCAATATACCTTAAGAGAACAAAAGTTCCCTGCAACTTTGATCCATTAGGTAAAAGAATC
JMSF037B18+ CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
JMFS100G04+ CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
JMSF012M02+ CCAATATACCTTAAGAGAACAAAAGTTCCCTGCAACTTTGATCCATTAGGTAAAAGAATC
JMSF046D15+ CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
JMSF052O10+ CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
                      ____________________________________________________________
consensus CCAATATACCTTAACAGAACAAAAGTTCCCCGCAACTTTGATCCATTAGGTAGTAGAACT
 
. : . : . : . : . : . :
JMSF047B11+ GTGGGCGGAGAACCAGGGCTGAGGGTTGCATCAGTGGAAAAAGAAACTCCAGAGATTTTT
JMSF037B18+ GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
JMFS100G04+ GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
JMSF012M02+ GTGGGCGGAGAACCAGGGCTGAGGGTTGCATCAGTGGAAAAAGAAACTCCAGAGATTTTT
JMSF046D15+ GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
JMSF052O10+ GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
                      ____________________________________________________________
consensus GTGGGTGGAGAACCAGGGCTGAGAGTTGCATCTGCGGAAAAAGCAACACCGGCAATTTTT
 
. : . : . : . : . : . :
JMSF047B11+ GCAGCAACAAAGATGGCCAGTGGAGGACTATCAGATGAAAATAAGATCTTGATTTCCAT
JMSF037B18+ GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
JMFS100G04+ GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
JMSF012M02+ GCAGCAACAAAGATGGCCAGTGGAGGACTATCAGATGAAAATAAGATCTTGATTTCCAT
JMSF046D15+ GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
JMSF052O10+ GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
                      ____________________________________________________________
consensus GCAGCAACAAAGACAGCCAGCGGAGGACTATCAGAGGATAATAGGATTTTGAGTTCCATA
 
. : . : . : . : . : . :
JMSF037B18+ GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
JMFS100G04+ GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
JMSF046D15+ GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
JMSF052O10+ GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
                      ____________________________________________________________
consensus GTAGCTGATCACTAGAAGACTGGTGATCAGCAATGGCAGATTCAAAGTGCTATTTCGCGA
 
. : . : . : . : . : . :
JMSF037B18+ GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
JMFS100G04+ GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
JMSF046D15+ GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
JMSF052O10+ GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
                      ____________________________________________________________
consensus GGGCGAACTACTAGTTCTTGTTGAGTGATCGCAACTCGCCTGTAGCTCTGCCGACTAGGT
 
. : . : . : . : . : . :
JMSF037B18+ GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCC
JMFS100G04+ GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCC
JMSF046D15+ GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCC
JMSF052O10+ GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCCGGTGGTTTCTTCTTTC
                      ____________________________________________________________
consensus GTTCGAGCTCAACGAGCCCGATGAGCGATGGCGGCGCTAGTCCCGGTGGTTTCTTCTTTC