Contig 002490:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+                                           AAGGTTCCACGATAGTTGTCCAAGTAAG
                      ____________________________________________________________
consensus                                             AAGGTTCCACGATAGTTGTCCAAGTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           CCCAATGTTTCCCAAAACTGGAGAACGGATATCCATCATAAACCCGGTTACATACAAGAA
                      ____________________________________________________________
consensus             CCCAATGTTTCCCAAAACTGGAGAACGGATATCCATCATAAACCCGGTTACATACAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           ATGCCAAATTATATATCCACAACATAAAAGCATACTTTGTCCTACCACATATCTTTACTA
                      ____________________________________________________________
consensus             ATGCCAAATTATATATCCACAACATAAAAGCATACTTTGTCCTACCACATATCTTTACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           GAAAATAATTAGCTGAGGCAATTGACAAAACATATAAGATGCAAGCTCCATGGAGATATG
JMSF052G24+                     AGCTGAGGCAATTGACAAAACATATAAGATGCAAGCTCCATGGAGATATG
                      ____________________________________________________________
consensus             GAAAATAATTAGCTGAGGCAATTGACAAAACATATAAGATGCAAGCTCCATGGAGATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           CTAAATAAGCCAAGGATATGAAAAGCCAGATAATGGACATCCCCTTTGCTTTTAGACCAT
JMSF052G24+           CTAAATAAGCCAAGGATATGAAAAGCCAGATAATGGACATCCCCTTTGCTTTTAGACCAT
                      ____________________________________________________________
consensus             CTAAATAAGCCAAGGATATGAAAAGCCAGATAATGGACATCCCCTTTGCTTTTAGACCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           ATGCTCTAAATACAGTAGCTAGTAGAGTAAAGATTCCAAAAACCAAAGTGAGAATTGGTA
JMSF052G24+           ATGCTCTAAATACAGTAGCTAGTAGAGTAAAGATTCCAAAAACCAAAGTGAGAATTGGTA
                      ____________________________________________________________
consensus             ATGCTCTAAATACAGTAGCTAGTAGAGTAAAGATTCCAAAAACCAAAGTGAGAATTGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           AGTTCCCCCGAAAGTTTCTCCATTGTGCATCAGAAGCATCATTGAGTCGATGAACAATCC
JMSF052G24+           AGTTCCCCCGAAAGTTTCTCCATTGTGCATCAGAAGCATCATTGAGTCGATGAACAATCC
                      ____________________________________________________________
consensus             AGTTCCCCCGAAAGTTTCTCCATTGTGCATCAGAAGCATCATTGAGTCGATGAACAATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           ATCCGCGACGCATTCCACGGAGCTGGTTGTAATGCTCGCGAGAGAGTTGGACAGCGCGAC
JMSF052G24+           ATCCGCGACGCATTCCACGGAGCTGGTTGTAATGCTCGCGAGAGAGTTGGACAGCGCGAC
                      ____________________________________________________________
consensus             ATCCGCGACGCATTCCACGGAGCTGGTTGTAATGCTCGCGAGAGAGTTGGACAGCGCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           GAATGATGATGGCATAGAAAGAAACAACGTATAGAATGAGAAAGGGTAGCTCTTTCCGTC
JMSF052G24+           GAATGATGATGGCATAGAAAGAAACAACGTATAGAATGAGAAAGGGTAGCTCTTTCCGTC
                      ____________________________________________________________
consensus             GAATGATGATGGCATAGAAAGAAACAACGTATAGAATGAGAAAGGGTAGCTCTTTCCGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           GCCAATAGCTGGTCATGGCTTCCTTTACGCAAGTCTCTGGTCACCGACTTGGGAAGGAAG
JMSF052G24+           GCCAATAGCTGGTCATGGCTTCCTTTACGCAAGTCTCTGGTCACCGACTTGGGAAGGAAG
                      ____________________________________________________________
consensus             GCCAATAGCTGGTCATGGCTTCCTTTACGCAAGTCTCTGGTCACCGACTTGGGAAGGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M11+           TGAATCAAAATCAATAGCAGGCCCACTG                                
JMSF052G24+           TGAATCAAAATCAATAGCAGGCCCACTGTGGCATTTTCCCGAACAATTGTGTTCACAGTT
                      ____________________________________________________________
consensus             TGAATCAAAATCAATAGCAGGCCCACTGTGGCATTTTCCCGAACAATTGTGTTCACAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G24+           TACTAACTCTGGTATTCTGGCTGCCGGCAACGGAGGGCGTGAGACACAGAGGCACTGACA
                      ____________________________________________________________
consensus             TACTAACTCTGGTATTCTGGCTGCCGGCAACGGAGGGCGTGAGACACAGAGGCACTGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G24+           ATGCACTCCGCAAAGAAACGGCGCAGCGATGTTGGCTGGATTGCGATTTGCTGGAACCAG
                      ____________________________________________________________
consensus             ATGCACTCCGCAAAGAAACGGCGCAGCGATGTTGGCTGGATTGCGATTTGCTGGAACCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052G24+           AGAGGCAGAGAAGCAGGCGGGCGGGGACGGGAGAGTGGGAGTGAGAAACGAAGAGAGCCA
                      ____________________________________________________________
consensus             AGAGGCAGAGAAGCAGGCGGGCGGGGACGGGAGAGTGGGAGTGAGAAACGAAGAGAGCCA