Contig 002484:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF051M04Sequence632002484 (2)ref|XP_009760222.1|2e-47PREDICTED: mucin-19-like [Nicotiana sylvestris]690011439 (2)ref|XP_011084386.1|5e-12PREDICTED: nuclear pore complex protein NUP1-like [Sesamum indicum]
JMSF051M15Sequence685002484 (2)ref|XP_009760222.1|2e-56PREDICTED: mucin-19-like [Nicotiana sylvestris]773011439 (2)ref|XP_011076877.1|6e-09PREDICTED: LOW QUALITY PROTEIN: nuclear pore complex protein NUP1-like [Sesamum

Alignment

This contig is upended


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JMSF051M15+                                              GATGCAACATCATTTTCATGTATTT
                      ____________________________________________________________
consensus                                                GATGCAACATCATTTTCATGTATTT
 
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JMSF051M04+                                                    AGTCTCTCAGTCTTGTTTT
JMSF051M15+           TTGAGCTGATGACAGGTGTTGTAAAAACTCCTCGAGATGTTAGTCTCTCAGTCTTGTTTT
                      ____________________________________________________________
consensus             TTGAGCTGATGACAGGTGTTGTAAAAACTCCTCGAGATGTTAGTCTCTCAGTCTTGTTTT
 
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JMSF051M04+           CTTCCAGCAAACCACCTGAAAGTACNGGAGCTGGTGTAGAATAATCAGCTTCAACTCNTC
JMSF051M15+           CTTCCAGCAAACCACCTGAAAGTACTGGAGCTGGTGTAGAATAATCAGCTTCAACTCTTC
                      ____________________________________________________________
consensus             CTTCCAGCAAACCACCTGAAAGTACTGGAGCTGGTGTAGAATAATCAGCTTCAACTCTTC
 
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JMSF051M04+           TGTCACAATCCCCAATAGAGGCATCTACCACTTTTGAATGCAAAAGNTTCGTCAGTCTAC
JMSF051M15+           TGTCACAATCCCCAATAGAGGCATCTACCACTTTTGAATGCAAAAGTTTCGTCAGTCTAC
                      ____________________________________________________________
consensus             TGTCACAATCCCCAATAGAGGCATCTACCACTTTTGAATGCAAAAGTTTCGTCAGTCTAC
 
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JMSF051M04+           CAATTTCACATCTAGTGAAAGTTTTCTGCTTCAGCAATTGCTCAAGCTCAGAGAATGCAT
JMSF051M15+           CAATTTCACATCTAGTGAAAGTTTTCTGCTTCAGCAATTGCTCAAGCTCAGAGAATGCAT
                      ____________________________________________________________
consensus             CAATTTCACATCTAGTGAAAGTTTTCTGCTTCAGCAATTGCTCAAGCTCAGAGAATGCAT
 
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JMSF051M04+           TGCTGTCAGAATGGTATGCAGTGCCATTGCTTTCATGTACTGTTGGTTGTAGAACCCCAG
JMSF051M15+           TGCTGTCAGAATGGTATGCAGTGCCATTGCTTTCATGTACTGTTGGTTGTAGAACCCCAG
                      ____________________________________________________________
consensus             TGCTGTCAGAATGGTATGCAGTGCCATTGCTTTCATGTACTGTTGGTTGTAGAACCCCAG
 
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JMSF051M04+           AATGATTATNGGGACCTGAATCCTGAAGTACATCAATGGACTCTTGCCTTCTCTCTGGAG
JMSF051M15+           AATGATTATTGGGACCTGAATCCTGAAGTACATCAATGGACTCTTGCCTTCTCTCTGGAG
                      ____________________________________________________________
consensus             AATGATTATTGGGACCTGAATCCTGAAGTACATCAATGGACTCTTGCCTTCTCTCTGGAG
 
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JMSF051M04+           TTGGCGGAGAATGAAGAGGGGGAGGGAGGCGCTTGCGGAAGAGAGGAGCGAGGAAGCGCT
JMSF051M15+           TTGGCGGAGAATGAAGAGGGGGAGGGAGGCGCTTGCGGAAGAGAGGAGCGAGGAAGCGCT
                      ____________________________________________________________
consensus             TTGGCGGAGAATGAAGAGGGGGAGGGAGGCGCTTGCGGAAGAGAGGAGCGAGGAAGCGCT
 
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JMSF051M04+           GAGCACCGGCATTGATAAGCTTGGAGGCAGGGTCAACAACGAGCTTGGTAAGCCAACTAG
JMSF051M15+           GAGCACCGGCATTGATAAGCTTGGAGGCAGGGTCAACAACGAGCTTGGTAAGCCAACTAG
                      ____________________________________________________________
consensus             GAGCACCGGCATTGATAAGCTTGGAGGCAGGGTCAACAACGAGCTTGGTAAGCCAACTAG
 
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JMSF051M04+           GGTTTNTGAGGGCAGTGGGAGGACGATCGTAAGGCGTGGCTTGAGGCCTCCGGAGTGGCC
JMSF051M15+           GGTTTCTGAGGGCAGTGGGAGGACGATCGTAAGGCGTGGCTTGAGGCCTCCGGAGTGGCC
                      ____________________________________________________________
consensus             GGTTTCTGAGGGCAGTGGGAGGACGATCGTAAGGCGTGGCTTGAGGCCTCCGGAGTGGCC
 
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JMSF051M04+           TCTTTCGGAACTTTCCTCCGGCTCCTCCG                               
JMSF051M15+           TCTTTCGGAACTTTCCTCCGGCTCCTCCGGCGTCGTACGCCGCCGTTGGTTCGCCGTCCG
                      ____________________________________________________________
consensus             TCTTTCGGAACTTTCCTCCGGCTCCTCCGGCGTCGTACGCCGCCGTTGGTTCGCCGTCCG
 
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JMSF051M15+           TCAACATTTGTCGGAGTTGTATAGAGAGAGAAAAGAGAGCAGGGCAGCGAATAAAGACCC
                      ____________________________________________________________
consensus             TCAACATTTGTCGGAGTTGTATAGAGAGAGAAAAGAGAGCAGGGCAGCGAATAAAGACCC