Contig 002480:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005E09Sequence509002480 (2)ref|XP_009787384.1|2e-62PREDICTED: post-GPI attachment to proteins factor 3 [Nicotiana sylvestris]716005338 (2)ref|NP_001275064.1|2e-74Per1-like family protein precursor [Solanum tuberosum] gb|ABB72805.1| Per1-like
JMSF051F23Sequence656002480 (2)ref|XP_009787384.1|3e-75PREDICTED: post-GPI attachment to proteins factor 3 [Nicotiana sylvestris]757005338 (2)ref|NP_001275064.1|5e-68Per1-like family protein precursor [Solanum tuberosum] gb|ABB72805.1| Per1-like

Alignment

This contig is upended


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JMSF051F23+               CTGAATGGCAGCTTATAATTAATTAGAATGAAGAAGGATACCCAGCCATGGGAATT
                      ____________________________________________________________
consensus                 CTGAATGGCAGCTTATAATTAATTAGAATGAAGAAGGATACCCAGCCATGGGAATT
 
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JMFF005E09+                                                                TAAACAC
JMSF051F23+           GTATAGCAAGATTGAGAGCAGAGAGAGCCACAGAAACAGGTTCCTGAATTCCGTAAACAC
                      ____________________________________________________________
consensus             GTATAGCAAGATTGAGAGCAGAGAGAGCCACAGAAACAGGTTCCTGAATTCCGTAAACAC
 
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JMFF005E09+           GTTGAAATGGCCATTTTCCATGATACTTGACAGGCTTGAGCCCAAGTTTTTGTCTCTCTT
JMSF051F23+           GTTGAAATGGCCATTTTCCATGATACTTGACAGGCTTGAGCCCAAGTTTTTGTCTCTCTT
                      ____________________________________________________________
consensus             GTTGAAATGGCCATTTTCCATGATACTTGACAGGCTTGAGCCCAAGTTTTTGTCTCTCTT
 
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JMFF005E09+           CCTCCCTGGCCAGCATACAATGATATCGACAATCACTGAGACAATCCCACTGTTTCCACT
JMSF051F23+           CCTCCCTGGCCAGCATACAATGATATCGACAATCACTGAGACAATCCCACTGTTTCCACT
                      ____________________________________________________________
consensus             CCTCCCTGGCCAGCATACAATGATATCGACAATCACTGAGACAATCCCACTGTTTCCACT
 
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JMFF005E09+           TTAAATAAAGTGGTTCTTGCAAATACCACGGACCATCAATGGGATTCCCACCAGATGAAA
JMSF051F23+           TTAAATAAAGTGGTTCTTGCAAATACCACGGACCATCAATGGGATTCCCACCAGATGAAA
                      ____________________________________________________________
consensus             TTAAATAAAGTGGTTCTTGCAAATACCACGGACCATCAATGGGATTCCCACCAGATGAAA
 
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JMFF005E09+           AATTACAATGCTGAAAGCATTTAACCCCTACACATCCACTCTTCTCACATTGCTGAACAC
JMSF051F23+           AATTACAATGCTGAAAGCATTTAACCCCTACACATCCACTCTTCTCACATTGCTGAACAC
                      ____________________________________________________________
consensus             AATTACAATGCTGAAAGCATTTAACCCCTACACATCCACTCTTCTCACATTGCTGAACAC
 
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JMFF005E09+           AAACTTTGTAAATCGGATCGGCATCTCCATCGCTGGCGTTGAGAACTGCAAAAATCGAAG
JMSF051F23+           AAACTTTGTAAATCGGATCGGCATCTCCATCGCTGGCGTTGAGAACTGCAAAAATCGAAG
                      ____________________________________________________________
consensus             AAACTTTGTAAATCGGATCGGCATCTCCATCGCTGGCGTTGAGAACTGCAAAAATCGAAG
 
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JMFF005E09+           AAAAAAGAGCGAAGAGCAGAACCAAACGACGCGGTGCCATAGGTGCGAGCACTGTACAGG
JMSF051F23+           AAAAAAGAGCGAAGAGCAGAACCAAACGACGCGGTGCCATAGGTGCGAGCACTGTACAGG
                      ____________________________________________________________
consensus             AAAAAAGAGCGAAGAGCAGAACCAAACGACGCGGTGCCATAGGTGCGAGCACTGTACAGG
 
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JMFF005E09+           AGGCAGATGGAGAAGAAAGTCAAAAGGCTAAAATTTCGAGCGCTTTCTACAGTGTCAACG
JMSF051F23+           AGGCAGATGGAGAAGAAAGTCAAAAGGCTAAAATTTCGAGCGCTTTCTACAGTGTCAACG
                      ____________________________________________________________
consensus             AGGCAGATGGAGAAGAAAGTCAAAAGGCTAAAATTTCGAGCGCTTTCTACAGTGTCAACG
 
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JMFF005E09+           GAGAAAAAAGGCGAAATCTCGCTATGGCATCATTGACTGATGAGCTTCCATTGAAATATA
JMSF051F23+           GAGAAAAAAGGCGAAATCTCGCTATGGCATCATTGACTGATGAGCTTCCATTGAAATATA
                      ____________________________________________________________
consensus             GAGAAAAAAGGCGAAATCTCGCTATGGCATCATTGACTGATGAGCTTCCATTGAAATATA
 
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JMFF005E09+           AAGAGAGAGTGTGCAGAT                                          
JMSF051F23+           AAGAGAGAGTGTGCAGATTGGTGAGTTCGGCGGATATGAAATCGATAGAAGACGTGAGCC
                      ____________________________________________________________
consensus             AAGAGAGAGTGTGCAGATTGGTGAGTTCGGCGGATATGAAATCGATAGAAGACGTGAGCC