Contig 002478:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030J20Sequence453002478 (3)gb|KGN62625.1|3e-20hypothetical protein Csa_2G361890 [Cucumis sativus]
JMSF021E17Sequence660002478 (3)ref|XP_006409189.1|5e-35hypothetical protein EUTSA_v100228211mg, partial [Eutrema salsugineum] gb|ESQ506758005843 (2)dbj|BAE96757.1|2e-94MAP kinase homolog [Nicotiana tabacum]
JMSF051C20Sequence656002478 (3)ref|XP_006409189.1|3e-34hypothetical protein EUTSA_v100228211mg, partial [Eutrema salsugineum] gb|ESQ506696005843 (2)dbj|BAE96757.1|5e-77MAP kinase homolog [Nicotiana tabacum]

Alignment

This contig is upended


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JMSF021E17+           GTCCTCAGGGCTTCAGTTCTATTGGAGAACACATCATTGATCTTCTTGATTGCCACTTTC
JMSF051C20+               TCAGGGCTTCAGTTCTATTGGAGAACACATCATTGATCTTCTTGATTGCCACTTTC
                      ____________________________________________________________
consensus             GTCCTCAGGGCTTCAGTTCTATTGGAGAACACATCATTGATCTTCTTGATTGCCACTTTC
 
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JMSF021E17+           TCATTACTCTCCCTGTTCACCGACGAACAGACAACCCCGTACGCCCCTCTACCTATGGGC
JMFF030J20+                                 ACGAACAGACAACCCCGTACGCCCCTCTACCTATGGGC
JMSF051C20+           TCATTACTCTCCCTGTTCACCGACGAACAGACAACCCCGTACGCCCCTCTACCTATGGGC
                      ____________________________________________________________
consensus             TCATTACTCTCCCTGTTCACCGACGAACAGACAACCCCGTACGCCCCTCTACCTATGGGC
 
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JMSF021E17+           TTGATCGGAATGTACTTAGTATCCACTTCAAACACTGTTTGCCACATTCTGTAATAATGC
JMFF030J20+           TTGATCGGAATGTACTTAGTATCCACTTCAAACACTGTTTGCCACATTCTGTAATAATGC
JMSF051C20+           TTGATCGGAATGTACTTAGTATCCACTTCAAACACTGTTTGCCACATTCTGTAATAATGC
                      ____________________________________________________________
consensus             TTGATCGGAATGTACTTAGTATCCACTTCAAACACTGTTTGCCACATTCTGTAATAATGC
 
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JMSF021E17+           TTTCCCGGCGCCCAAATTCCGTTCGGTGGCTCCGCCGCCGTCGCCATTCCGCTTTCCGGC
JMFF030J20+           TTTCCCGGCGCCCAAATTCCGTTCGGTGGCTCCGCCGCCGTCGCCATTCCGCTTTCCGGC
JMSF051C20+           TTTCCCGGCGCCCAAATTCCGTTCGGTGGCTCCGCCGCCGTCGCCATTCCGCTTTCCGGC
                      ____________________________________________________________
consensus             TTTCCCGGCGCCCAAATTCCGTTCGGTGGCTCCGCCGCCGTCGCCATTCCGCTTTCCGGC
 
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JMSF021E17+           AATTCGATCTCGGGCGATCTTCTGTTCTTTCCCTTTTTCAGTCTCCCCCGAATGTGCACT
JMFF030J20+           AATTCGATCTCGGGCGATCTTCTGTTCTTTCCCTTTTTCAGTCTCCCCCGAATGTGCACT
JMSF051C20+           AATTCGATCTCGGGCGATCTTCTGTTCTTTCCCTTTTTCAGTCTCCCCCGAATGTGCACT
                      ____________________________________________________________
consensus             AATTCGATCTCGGGCGATCTTCTGTTCTTTCCCTTTTTCAGTCTCCCCCGAATGTGCACT
 
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JMSF021E17+           TTCCTTTATCTTCAATCTTCCCACAACTTCTGCAAGACTGCGACTTTATCCACTCAAAAG
JMFF030J20+           TTCCTTTATCTTCAATCTTCCCACAACTTCTGCAAGACTGCGACTTTATCCACTCAAAAG
JMSF051C20+           TTCCTTTATCTTCAATCTTCCCACAACTTCTGCAAGACTGCGACTTTATCCACTCAAAAG
                      ____________________________________________________________
consensus             TTCCTTTATCTTCAATCTTCCCACAACTTCTGCAAGACTGCGACTTTATCCACTCAAAAG
 
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JMSF021E17+           GATTCTTATCTCTGAACAAGTAAAGCCCAGATTTATTCTTTAACCCTCACAGAAATTCTT
JMFF030J20+           GATTCTTATCTCTGAACAAGTAAAGCCCAGATTTATTCTTTAACCCTCACAGAAATTCTT
JMSF051C20+           GATTCTTATCTCTGAACAAGTAAAGCCCAGATTTATTCTTTAACCCTCACAGAAATTCTT
                      ____________________________________________________________
consensus             GATTCTTATCTCTGAACAAGTAAAGCCCAGATTTATTCTTTAACCCTCACAGAAATTCTT
 
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JMSF021E17+           CTATTTTTATTGGAAAAGTCAGTTGAAATTTCTCCGGTGATACATAGATACATTATACAT
JMFF030J20+           CTATTTTTATTGGGAAAGTCAGTTGAAATTTCTCCGGTGATACATAGATACATTATACAT
JMSF051C20+           CTATTTTTATTGGAAAAGTCAGTTGAAATTTCTCCGGTGATACATAGATACATTATACAT
                      ____________________________________________________________
consensus             CTATTTTTATTGGAAAAGTCAGTTGAAATTTCTCCGGTGATACATAGATACATTATACAT
 
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JMSF021E17+           GCATATGCATCAACCATACGGGGTGGGGTGGATATAGAAACAGAAAGAGACAACTAACCA
JMFF030J20+           GCATATGCATCAACCATACGGGGTGGGGTGGATATAGAAACAGAAAGAGACAACT     
JMSF051C20+           GCATATGCATCAACCATACGGGGTGGGGTGGATATAGAAACAGAAAGAGACAACTAACCA
                      ____________________________________________________________
consensus             GCATATGCATCAACCATACGGGGTGGGGTGGATATAGAAACAGAAAGAGACAACTAACCA
 
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JMSF021E17+           AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATTGGGTTTGGAA
JMSF051C20+           AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATTGGGTTTGGAA
                      ____________________________________________________________
consensus             AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATTGGGTTTGGAA
 
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JMSF021E17+           AGATAAAGATTATCGATCTCCAAGAACACGACAACCCTAGTGTCTGTTTTTCTCACCA  
JMSF051C20+           AGATAAAGATTATCGATCTCCAAGAACACGACAACCCTAGTGTCTGTTTTTCTCACCACC
                      ____________________________________________________________
consensus             AGATAAAGATTATCGATCTCCAAGAACACGACAACCCTAGTGTCTGTTTTTCTCACCACC