Contig 002475:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF051A18Sequence653002475 (2)ref|XP_009628858.1|6e-43PREDICTED: UPF0586 protein C9orf41 homolog [Nicotiana tomentosiformis]714004416 (2)ref|XP_006429749.1|3e-114hypothetical protein CICLE_v10011552mg [Citrus clementina] gb|ESR42989.1| hypoth
JMSF051C17Sequence705002475 (2)ref|XP_009628858.1|3e-46PREDICTED: UPF0586 protein C9orf41 homolog [Nicotiana tomentosiformis]731004416 (2)gb|KDO64325.1|6e-94hypothetical protein CISIN_1g015160mg [Citrus sinensis]

Alignment

This contig is upended


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JMSF051C17+                                                                      G
                      ____________________________________________________________
consensus                                                                        G
 
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JMSF051C17+           GCTCAACCATCTAGGAGACGATGAAGAAATATTCTCATTGCAACTAGCAGAAGGAAATTG
                      ____________________________________________________________
consensus             GCTCAACCATCTAGGAGACGATGAAGAAATATTCTCATTGCAACTAGCAGAAGGAAATTG
 
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JMSF051C17+           TTTCCCCAGATCTNGGAATTCCTTACACCAATCATCGCCAACACTATTTGTGTTATTCTG
JMSF051A18+                  AGATCTTGGAATTCCTTACACCAATCATCGCCAACACTATTTGTGTTATTCTG
                      ____________________________________________________________
consensus             TTTCCCCAGATCTTGGAATTCCTTACACCAATCATCGCCAACACTATTTGTGTTATTCTG
 
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JMSF051C17+           ATGTTTTAAACCACTGCTTAAACTCACA-TCATTCAACTCATTTGAATGCTCAATTTTCT
JMSF051A18+           ATGTTTTAAACCACTGCTTAAACTCACATTCATTCAACTCATTTGAATGCTCAATTTTCT
                      ____________________________________________________________
consensus             ATGTTTTAAACCACTGCTTAAACTCACATTCATTCAACTCATTTGAATGCTCAATTTTCT
 
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JMSF051C17+           CCTC----------CTTAATAGCAACACATGTCCCAGAAATACCACCACCATGTTCCTCA
JMSF051A18+           CCTCCTGTGGTGGTCTTAATAGCAACACATGTCCCAGAAATACCACCACCATGTTCCTCA
                      ____________________________________________________________
consensus             CCTCCTGTGGTGGTCTTAATAGCAACACATGTCCCAGAAATACCACCACCATGTTCCTCA
 
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JMSF051C17+           GAGCTTGGTTTAACAGATTCCTTACAGTTCAGTCCACAACATCTAGTTGTGATGTTATCT
JMSF051A18+           GAGCTTGGTTTAACAGATTCCTTACAGTTCAGTCCACAACATCTAGTTGTGATGTTATCT
                      ____________________________________________________________
consensus             GAGCTTGGTTTAACAGATTCCTTACAGTTCAGTCCACAACATCTAGTTGTGATGTTATCT
 
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JMSF051C17+           AGATGTTGGTCTTGGCAAATATCAGTATCCTGGCTCAAATCTAGTGGGGGCTCAAATGCC
JMSF051A18+           AGATGTTGGTCTTGGCAAATATCAGTATCCTGGCTCAAATCTAGTGGGGGCTCAAATGCC
                      ____________________________________________________________
consensus             AGATGTTGGTCTTGGCAAATATCAGTATCCTGGCTCAAATCTAGTGGGGGCTCAAATGCC
 
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JMSF051C17+           TTCAGCATTTCGAATATGAAATATGAATTTTGAGCAATACACCATCTAAGTTTCTGAAAC
JMSF051A18+           TTCAGCATTTCGAATATGAAATATGAATTTTGAGCAATACACCATCTAAGTTTCTGAAAC
                      ____________________________________________________________
consensus             TTCAGCATTTCGAATATGAAATATGAATTTTGAGCAATACACCATCTAAGTTTCTGAAAC
 
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JMSF051C17+           TTCAAAGGGAGATGAGATAGGATAACCTTGTGTGCTTGTGGTAACTTTCTGAAAGATCTT
JMSF051A18+           TTCAAAGGGAGATGAGATAGGATAACCTTGTGTGCTTGTGGTAACTTTCTGAAAGATCTT
                      ____________________________________________________________
consensus             TTCAAAGGGAGATGAGATAGGATAACCTTGTGTGCTTGTGGTAACTTTCTGAAAGATCTT
 
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JMSF051C17+           TCATATCTTTTTATATCTTCCTCCGAAGCTTCAGGATAGTTGATGTATGCGCTAATGATG
JMSF051A18+           TCATATCTTTTTATATCTTCCTCCGAAGCTTCAGGATAGTTGATGTATGCGCTAATGATG
                      ____________________________________________________________
consensus             TCATATCTTTTTATATCTTCCTCCGAAGCTTCAGGATAGTTGATGTATGCGCTAATGATG
 
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JMSF051C17+           CGCCTTAGGGCTTTAACTTCTAAGGCTTCTTCGAGTTTCCTCCGACGCTCCACGGCTTCA
JMSF051A18+           CGCCTTAGGGCTTTAACTTCTAAGGCTTCTTCGAGTTTCCTCCGACGCTCCACGGCTTCA
                      ____________________________________________________________
consensus             CGCCTTAGGGCTTTAACTTCTAAGGCTTCTTCGAGTTTCCTCCGACGCTCCACGGCTTCA
 
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JMSF051C17+           GCTTCGGCTTCGGCTTCGGTGTTCAACATTTCCGACGACCCCTCTTCGACTGTATCTCCG
JMSF051A18+           GCTTCGGCTTCGGCTTCGGTGTTCAACATTTCCGACGACCCCTCTTCGACTGTATCTCCG
                      ____________________________________________________________
consensus             GCTTCGGCTTCGGCTTCGGTGTTCAACATTTCCGACGACCCCTCTTCGACTGTATCTCCG
 
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JMSF051C17+           ACAGAGTATGCTGCTACAGTTCAACCTGTTGAATGGAAATCCCCTTCAATCTTC      
JMSF051A18+           ACAGAGTATGCTGCTACAGTTCAACCTGTTGAATGGAAATCCCCTTCAATCTTCAGGCTC
                      ____________________________________________________________
consensus             ACAGAGTATGCTGCTACAGTTCAACCTGTTGAATGGAAATCCCCTTCAATCTTCAGGCTC