Contig 002474:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005I04Sequence213002474 (3)261001500 (3)ref|XP_004251492.1|2e-05PREDICTED: vesicle-associated protein 4-1-like [Solanum lycopersicum]
JMSF050P23Sequence226002474 (3)692001500 (3)ref|XP_009616169.1|1e-104PREDICTED: vesicle-associated protein 4-1-like isoform X2 [Nicotiana tomentosif
JMSF052F21Sequence162002474 (3)846001500 (3)ref|XP_009616169.1|9e-114PREDICTED: vesicle-associated protein 4-1-like isoform X2 [Nicotiana tomentosif

Alignment

This contig is upended


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JMSF005I04+                                           ACCAAACTCCCTCCGAACAACAATTTCT
                      ____________________________________________________________
consensus                                             ACCAAACTCCCTCCGAACAACAATTTCT
 
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JMSF005I04+           TTACCTCTCTGTTTTTCTTCTTCTCCAGAGGATTTCAATTTTCAGCNGGCCNTGAAAATC
JMSF052F21+                                        GGATTTCAATTTTCAGCNGGCCNTGAAAATC
JMSF050P23+                                        GGATTTCAATTTTCAGCNGGCCCTGAAAATC
                      ____________________________________________________________
consensus             TTACCTCTCTGTTTTTCTTCTTCTCCAGAGGATTTCAATTTTCAGCNGGCCCTGAAAATC
 
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JMSF005I04+           NCGGAATTCAGATTGGCTGAGAGCAGTGGTTGACTTGAAATCCAAATCCGATGTTTACTT
JMSF052F21+           NCGGAATTCAGATTGGCTGAGAGCNGTGGTTGACTTGAAATCCAAATCCGATGTTTACTT
JMSF050P23+           NCGGAATTCAGATTGGCTGAGAGCNGTGGTTGACTTGAAATCCAAATNCGATGTTTACTT
                      ____________________________________________________________
consensus             NCGGAATTCAGATTGGCTGAGAGCAGTGGTTGACTTGAAATCCAAATCCGATGTTTACTT
 
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JMSF005I04+           ACGTAAGATATCAAAGTNTACGAGAAGT-AAAAAAAAAACAAAAGAAAAAATCGTCGTAT
JMSF052F21+           ACGTAAGATATCAAAGTTTTCGGGAAGTAAAAAAAAAAACAAAAGAAAAAATCGTCGTAT
JMSF050P23+           ACGTAAGATATCAAAGTTTNCGNGAAGTAAAAAAAAAAACAAAAGAAAAAATCGTCGTAT
                      ____________________________________________________________
consensus             ACGTAAGATATCAAAGTTTTCGGGAAGTAAAAAAAAAAACAAAAGAAAAAATCGTCGTAT
 
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JMSF005I04+           TCACT                                                       
JMSF052F21+           TCACT                                                       
JMSF050P23+           TCACTGTCGGGGAGTATGGTGGTTTCAGTTGATTGAAGAGGAAAGTTGCATTGTCTCCCC
                      ____________________________________________________________
consensus             TCACTGTCGGGGAGTATGGTGGTTTCAGTTGATTGAAGAGGAAAGTTGCATTGTCTCCCC