Contig 002471:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049J13Sequence695002471 (3)ref|XP_006342385.1|4e-83PREDICTED: uncharacterized protein LOC102579594 isoform X2 [Solanum tuberosum]765001490 (2)ref|XP_008223108.1|252PREDICTED: uncharacterized protein LOC103322929 [Prunus mume]
JMSF050J13Sequence487002471 (3)ref|XP_006342385.1|6e-24PREDICTED: uncharacterized protein LOC102579594 isoform X2 [Solanum tuberosum]
JMSF051L13Sequence695002471 (3)ref|XP_006342385.1|1e-82PREDICTED: uncharacterized protein LOC102579594 isoform X2 [Solanum tuberosum]750001490 (2)ref|XP_008223108.1|278PREDICTED: uncharacterized protein LOC103322929 [Prunus mume]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+                                            AACATCATTATGCTGTTTAGCATACAT
JMSF049J13+                                    ATGAGACTAACATCATTATGCTGTTTAGCATACAT
                      ____________________________________________________________
consensus                                      ATGAGACTAACATCATTATGCTGTTTAGCATACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           CAATAAATGGTGAGCAGATCCAATATTAGGACTTAATCCATACACATTGTGCTTAAATAA
JMSF049J13+           CAATAAATGGTGAGCAGATCCAATATTAGGACTTAATCCATACACATTGTGCTTAAATAA
                      ____________________________________________________________
consensus             CAATAAATGGTGAGCAGATCCAATATTAGGACTTAATCCATACACATTGTGCTTAAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           TGCCTTTTTACCAAACTCAATGGCACCTATGCGTATGCATGCCTTTGTAACTTCCTGACA
JMSF049J13+           TGCCTTTTTACCAAACTCAATGGCACCTATGCGTATGCATGCCTTTGTAACTTCCTGACA
                      ____________________________________________________________
consensus             TGCCTTTTTACCAAACTCAATGGCACCTATGCGTATGCATGCCTTTGTAACTTCCTGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           GAGTGCGCAATTGAAATTTTCATGGATACGTAGATTTGACAGTCTAAATATTCGAAGTCT
JMSF049J13+           GAGTGCGCAATTGAAATTTTCATGGATACGTAGATTTGACAGTCTAAATATTCGAAGTCT
JMSF050J13+                                                                GAAGTCT
                      ____________________________________________________________
consensus             GAGTGCGCAATTGAAATTTTCATGGATACGTAGATTTGACAGTCTAAATATTCGAAGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           CTGTAAAATGTTAAAGAGAAGCTTAATATCATCATGGTTTGCACATTTTTCAATTAGTGA
JMSF049J13+           CTGTAAAATGTTAAAGAGAAGCTTAATATCATCATGGTTTGCACATTTTTCAATTAGTGA
JMSF050J13+           CTGTAAAATGTTAAAGAGAAGCTTAATATCATCATGGTTTGCACATTTTTCAATTAGTGN
                      ____________________________________________________________
consensus             CTGTAAAATGTTAAAGAGAAGCTTAATATCATCATGGTTTGCACATTTTTCAATTAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           CCACAAAAAAGCATTTGGAGGAGCCGATTTTTTATCCACAATAGACTTCAGAATCTTTTC
JMSF049J13+           CCACAAAAAAGCATTTGGAGGAGCCGATTTTTTATCCACAATAGACTTCAGAATCTTTTC
JMSF050J13+           CCNCAAAAAAGCATTTGGAGGAGCCGATTTTTTATCCACAATAGACTTCAGAATCTTTTC
                      ____________________________________________________________
consensus             CCACAAAAAAGCATTTGGAGGAGCCGATTTTTTATCCACAATAGACTTCAGAATCTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           GTATATTTCCTTCACAGTTTCTGTAGAGCCACTTTCAACTACAGTTGCTTCAGAAGAATA
JMSF049J13+           GTATATTTCCTTCACAGTTTCTGTAGAGCCACTTTCAACTACAGTTGCTTCAGAAGAATA
JMSF050J13+           GTATATTTCCTTCACAGTTTCTGTAGAGCCACTTTCAANTNCAGTTGCTTCAGAAGAATA
                      ____________________________________________________________
consensus             GTATATTTCCTTCACAGTTTCTGTAGAGCCACTTTCAACTACAGTTGCTTCAGAAGAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           TGACACCCTCTGCATCATATGGCATATAGAAGATGACAACGCTTCTCTTTGAAGTTTTGA
JMSF049J13+           TGACACCCTCTGCATCATATGGCATATAGAAGATGACAACGCTTCTCTTTGAAGTTTTGA
JMSF050J13+           TGACACCCTNTGCATCATATGGCATATAGAAGATGACAACGCTTCTCTNTGAAGTTTTGA
                      ____________________________________________________________
consensus             TGACACCCTCTGCATCATATGGCATATAGAAGATGACAACGCTTCTCTTTGAAGTTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           TTCCACCTGCGTGGGATTTCCAGAAATCCCTGAGTAGGAGGAGGAAAGAAGGTTCGTGGG
JMSF049J13+           TTCCACCTGCGTGGGATTTCCAGAAATCCCTGAGTAGGAGGAGGAAAGAAGGTTCGTGGG
JMSF050J13+           TTCCACCTGCGTGGGATTTCCAGAAATCCCTGAGTAGGAGGAGGAAAGAAGGTTCGTGGG
                      ____________________________________________________________
consensus             TTCCACCTGCGTGGGATTTCCAGAAATCCCTGAGTAGGAGGAGGAAAGAAGGTTCGTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           ATAGCAGCGCCATAGAGAAGAGCTATGAGAAGCATCAATGGCGTGGATAGTGGGTGAGTG
JMSF049J13+           ATAGCAGCGCCATAGAGAAGAGCTATGAGAAGCATCAATGGCGTGGATAGTGGGTGAGTG
JMSF050J13+           ATAGCAGCGCCATAGAGAAGAGCTATGAGAAGCATCAATGGCGTGGATAGTGGGTGAGTG
                      ____________________________________________________________
consensus             ATAGCAGCGCCATAGAGAAGAGCTATGAGAAGCATCAATGGCGTGGATAGTGGGTGAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           AAGTCGTTCGGAGTTGAGCAGAATTGGCGATGGATTCCTCAAAACCCTAGCTAGCCGACC
JMSF049J13+           AAGTCGTTCGGAGTTGAGCAGAATTGGCGATGGATTCCTCAAAACCCTAGCTAGCCGACC
JMSF050J13+           AAGTCGTTCGGAGTTGAGCAGAATTGGCGATGGATTCCTCAAAACCCTAGCTAGCCGACC
                      ____________________________________________________________
consensus             AAGTCGTTCGGAGTTGAGCAGAATTGGCGATGGATTCCTCAAAACCCTAGCTAGCCGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051L13+           AGCCTTCCAAAACCCCTGCATTTTCTCAAACAATGCAGTAAAAGCAGAAGAGTTCTTC  
JMSF049J13+           AGCCTTCCAAAACCCCTGCATTTTCTCAAACAATGCAGTAAAAGCAGAAGAGTTCTTC  
JMSF050J13+           AGCCTTCCAAAACCCCTGCATTTTCTCAAACAATGCAGTAAAAGCAGAAGAGTTCTTCTC
                      ____________________________________________________________
consensus             AGCCTTCCAAAACCCCTGCATTTTCTCAAACAATGCAGTAAAAGCAGAAGAGTTCTTCTC