| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF011F15 | Sequence | 255 | 002469 (5) | 739 | 008465 (5) | ref|XP_009587659.1| | 7e-101 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] | |||
| JMSF011L23 | Sequence | 272 | 002469 (5) | 736 | 008465 (5) | ref|XP_009587659.1| | 1e-97 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] | |||
| JMSF015O20 | Sequence | 247 | 002469 (5) | emb|CDO99906.1| | 6e-06 | unnamed protein product [Coffea canephora] | 745 | 008465 (5) | ref|XP_009587659.1| | 3e-101 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] |
| JMSF050G23 | Sequence | 621 | 002469 (5) | emb|CDO99906.1| | 7e-59 | unnamed protein product [Coffea canephora] | 702 | 008465 (5) | ref|XP_009587659.1| | 5e-93 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] |
| JMSF050J02 | Sequence | 640 | 002469 (5) | emb|CDO99906.1| | 2e-91 | unnamed protein product [Coffea canephora] | 705 | 008465 (5) | ref|XP_009587659.1| | 2e-94 | PREDICTED: protein trichome birefringence-like 36 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF050J02+ ACGAGGAATGGAGCCCAGCAGAACTCAATGGATGTCT
____________________________________________________________
consensus ACGAGGAATGGAGCCCAGCAGAACTCAATGGATGTCT
. : . : . : . : . : . :
JMSF050J02+ CGTAATCCAGAGCATGGAAAGCCATGGAAGGTCCATTGTAGGTGACAGTCTTTCTATCAG
____________________________________________________________
consensus CGTAATCCAGAGCATGGAAAGCCATGGAAGGTCCATTGTAGGTGACAGTCTTTCTATCAG
. : . : . : . : . : . :
JMSF050J02+ TGGGAATAACAGATTGTACTAAGCAAACAAGAGACTCCCATTGATTCCTCATTATAGAAT
JMSF050G23+ ATTGATTCCTCATTATAGAAT
____________________________________________________________
consensus TGGGAATAACAGATTGTACTAAGCAAACAAGAGACTCCCATTGATTCCTCATTATAGAAT
. : . : . : . : . : . :
JMSF050J02+ CACCCACAAGCATTATTCTTTTCCTCCTCATCCTCCCCAGAAACTCCAATGCATCAAACC
JMSF050G23+ CACCCACAAGCATTATTCTTTTCCTCCTCATCCTCCCCAGAAACTCCAATGCATCAAACC
____________________________________________________________
consensus CACCCACAAGCATTATTCTTTTCCTCCTCATCCTCCCCAGAAACTCCAATGCATCAAACC
. : . : . : . : . : . :
JMSF050J02+ TGGGAATGGTGCAGCCATCTGGCTTCCATTTCCACTTTTGGTAGTCGGAATCGGGGCGGC
JMSF050G23+ TGGGAATGGTGCAGCCATCTGGCTTCCATTTCCACTTTTGGTAGTCGGAATCGGGGCGGC
____________________________________________________________
consensus TGGGAATGGTGCAGCCATCTGGCTTCCATTTCCACTTTTGGTAGTCGGAATCGGGGCGGC
. : . : . : . : . : . :
JMSF050J02+ CGTTCTTCGAGCACGAAACGGCGGTGCTAAGATATGGGCAACGGGCGGGGTCGTAGAGAG
JMSF050G23+ CGTTCTTCGAGCACGAAACGGCGGTGCTAAGATATGGGCAACGGGCGGGGTCGTAGAGAG
____________________________________________________________
consensus CGTTCTTCGAGCACGAAACGGCGGTGCTAAGATATGGGCAACGGGCGGGGTCGTAGAGAG
. : . : . : . : . : . :
JMSF050J02+ GGTAAGATTGATCAAAGACCCATTTTCCGGTGGAGAAATCGCAGCTTCTGAGGGATGCAT
JMSF015O20+ ATCGCAGCTTCTGAGGGATGCAT
JMSF050G23+ GGTAAGATTGATCAAAGACCCATTTTCCGGTGGAGAAATCGCAGCTTCTGAGGGATGCAT
____________________________________________________________
consensus GGTAAGATTGATCAAAGACCCATTTTCCGGTGGAGAAATCGCAGCTTCTGAGGGATGCAT
. : . : . : . : . : . :
JMSF050J02+ GGCGGCTCTGGACCATGCTGATCTCGTCGTCGTGGTCGTCGCCGTCCAGCCATGACAGTT
JMSF015O20+ GGCGGCTCTGGACCATGCTGATCTCGTCGTCGTGGTCGTCGCCGTCCAGCCATGAAAGTT
JMSF050G23+ GGCGGCTCTGGACCATGCTGATCTCGTCGTCGTGGTCGTCGCCGTCCAGCCATGACAGTT
____________________________________________________________
consensus GGCGGCTCTGGACCATGCTGATCTCGTCGTCGTGGTCGTCGCCGTCCAGCCATGACAGTT
. : . : . : . : . : . :
JMSF050J02+ CCTCTATTTCGTACGGCGAGGACTCTGCGCAGAAGAAGAAGCTCGAGAGAAGAAGGAACA
JMSF011L23+ CGTACGGCGAGGACTCTGCGCAGAAGAAGAAGCTCGAGAGAAGAAGGAACA
JMSF011F15+ GCGCAGAAGAAGAAGCTCGAGAGAAGAAGGAACA
JMSF015O20+ CCTCTATTTCGTACGGCGAGGACTCTGCGCAGAAGAAGAAGCTCGAGAGAAGAAGGAACA
JMSF050G23+ CCTCTATTTCGTACGGCGAGGACTCTGCGCAGAAGAAGAAGCTCGAGAGAAGAAGGAACA
____________________________________________________________
consensus CCTCTATTTCGTACGGCGAGGACTCTGCGCAGAAGAAGAAGCTCGAGAGAAGAAGGAACA
. : . : . : . : . : . :
JMSF050J02+ CGAAGAAGAAGAAGAAGAAAAGACAGAAACTTTTCGCCATTAATGGCAATGTAGGAGGAA
JMSF011L23+ CGAAGAAGAAGAAGAAGAAAAGACAGAAACTTTTCGCCATTAATGGCAATGTAGGAGGAA
JMSF011F15+ CGAAGAAGAAGAAGAAGAAAAGACAGAAACTTTTCGCCATTAATGGCAATGTAGGAGGAA
JMSF015O20+ CGAAGAAGAAGAAGAAGAAAAGACAGAAACTTTTCGCCATTAATGGCAATGTAGGAGGAA
JMSF050G23+ CGAAGAAGAAGAAGAAGAAAAGACAGAAACTTTTCGCCATTAATGGCAATGTAGGAGGAA
____________________________________________________________
consensus CGAAGAAGAAGAAGAAGAAAAGACAGAAACTTTTCGCCATTAATGGCAATGTAGGAGGAA
. : . : . : . : . : . :
JMSF050J02+ AGGTGGAAGTGTAGCAGAGAGTAGAGTCAGTAGTGGGACTGGGGGGGACTCATCACGCCC
JMSF011L23+ AGGTGGAAGTGTAGCAGAGAGTAGAGTCAGTAGTGGGACTGGGGGGGACTCATCACGCCC
JMSF011F15+ AGGTGGAAGTGTAGCAGAGAGTAGAGTCAGTAGTGGGACTGGGGGGGACTCATCACGCCC
JMSF015O20+ AGGTGGAAGTGTAGCAGAGAGTAGAGTCAGTAGTGGGACTGGG
JMSF050G23+ AGGTGGAAGTGTAGCAGAGAGTAGAGTCAGTAGTGGGACTGGGGGGGACTCATCACGCCC
____________________________________________________________
consensus AGGTGGAAGTGTAGCAGAGAGTAGAGTCAGTAGTGGGACTGGGGGGGACTCATCACGCCC
. : . : . : . : . : . :
JMSF050J02+ AT
JMSF011L23+ ATGGTGAAGCTCCTTTAAAGCTCGTCCATGGTGCACTTTAAAGTGGAGAAATTGAAGGGC
JMSF011F15+ ATGGTGAAGCTCCTTTAAAGCTCGTCCATGGTGCACTTTAAAGTGGAGAAATTGAAGGGC
JMSF050G23+ ATGGTGAAGCTCCTTTAAAGCTCGTCCATGGTGCACTTTAAAGTGGAGAAATTGAAGGGC
____________________________________________________________
consensus ATGGTGAAGCTCCTTTAAAGCTCGTCCATGGTGCACTTTAAAGTGGAGAAATTGAAGGGC
. : . : . : . : . : . :
JMSF011L23+ CTCGCGGCGTGACTTGCGCTGCTGGGTGGGACGCACAATC
JMSF011F15+ CTCGCGGCGTGACTTGCGCTGCTGGGTGGGACGCACAATC
JMSF050G23+ CTCGCGGCGTGACTTGCGCTGCTGGGTGGGACGCACAATCAAATGCATCATCCATTCTCC
____________________________________________________________
consensus CTCGCGGCGTGACTTGCGCTGCTGGGTGGGACGCACAATCAAATGCATCATCCATTCTCC