Contig 002467:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008K03Sequence319002467 (2)ref|XP_009777127.1|1e-20PREDICTED: uncharacterized protein LOC104226766 isoform X1 [Nicotiana sylvestri805011251 (2)ref|XP_009777128.1|5e-66PREDICTED: uncharacterized protein LOC104226766 isoform X2 [Nicotiana sylvestri
JMSF050E17Sequence666002467 (2)ref|XP_006344993.1|2e-34PREDICTED: mediator of RNA polymerase II transcription subunit 1-like isoform X805011251 (2)ref|XP_009777128.1|2e-66PREDICTED: uncharacterized protein LOC104226766 isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF050E17+                                                                 ACTAAA
                      ____________________________________________________________
consensus                                                                   ACTAAA
 
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JMSF050E17+           GTTTGTACCGGAATCATTCCCACCCAAGACAATGCTTGGGTGGTTGGTGGGGCTGTTAGC
                      ____________________________________________________________
consensus             GTTTGTACCGGAATCATTCCCACCCAAGACAATGCTTGGGTGGTTGGTGGGGCTGTTAGC
 
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JMSF050E17+           AGGGGAGTCCAAATCACTGTAATTGTTAACCGATCCTTCATTATCCTCTTCCCCCCTAGG
                      ____________________________________________________________
consensus             AGGGGAGTCCAAATCACTGTAATTGTTAACCGATCCTTCATTATCCTCTTCCCCCCTAGG
 
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JMSF050E17+           GATTATCTCTAGCTTCTCTATAGACCGGGGCCTTTCATCCACACCTTTCACACTACCACA
                      ____________________________________________________________
consensus             GATTATCTCTAGCTTCTCTATAGACCGGGGCCTTTCATCCACACCTTTCACACTACCACA
 
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JMSF050E17+           AGTCCCTCCTAGACAATTCAGCTCCTCCTTTGGTCCCTTATTCTTCACTTGTGAAAGCCA
                      ____________________________________________________________
consensus             AGTCCCTCCTAGACAATTCAGCTCCTCCTTTGGTCCCTTATTCTTCACTTGTGAAAGCCA
 
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JMSF050E17+           CTGCTCGCGCCTAGCATCAAGCTTGTACTGCTTCAACTTGGCCGAACGATGAGACTGAAA
                      ____________________________________________________________
consensus             CTGCTCGCGCCTAGCATCAAGCTTGTACTGCTTCAACTTGGCCGAACGATGAGACTGAAA
 
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JMSF050E17+           TTCCAAAATAAAAAAAATAATACAGAAATGAAAAATATTACCCAATCACAGCAACACAAT
                      ____________________________________________________________
consensus             TTCCAAAATAAAAAAAATAATACAGAAATGAAAAATATTACCCAATCACAGCAACACAAT
 
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JMSF050E17+           TACCTTAAAAGACAAAAATGAAAAACGAATTAGCACAAAACAAAAGAAGAATTGAAATTA
                      ____________________________________________________________
consensus             TACCTTAAAAGACAAAAATGAAAAACGAATTAGCACAAAACAAAAGAAGAATTGAAATTA
 
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JMSF008K03+            CCTCTTTTTCTTTGCTAAATCCTTAGGGTTAGAAGAGGCCATGGGGATCGAAGCCTTGG
JMSF050E17+           CCCTCTTTTTCTTTGCTAAATCCTTAGGGTTAGAAGAGGCCATGGGGATCGAAGCCTTGG
                      ____________________________________________________________
consensus             CCCTCTTTTTCTTTGCTAAATCCTTAGGGTTAGAAGAGGCCATGGGGATCGAAGCCTTGG
 
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JMSF008K03+           GGATTGAATCGGAAATCATGGCTG                                    
JMSF050E17+           GGATTGAATCGGAAATCATGGCTGCCACGACGGAGTGTGAAGCGGATGAATCGATGAGAA
                      ____________________________________________________________
consensus             GGATTGAATCGGAAATCATGGCTGCCACGACGGAGTGTGAAGCGGATGAATCGATGAGAA
 
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JMSF050E17+           ACCCTATCGTGAGTGGACGGAAAAATCTCAAGAATTTGAGAGAGAGAAAAGGAGTGACGG
                      ____________________________________________________________
consensus             ACCCTATCGTGAGTGGACGGAAAAATCTCAAGAATTTGAGAGAGAGAAAAGGAGTGACGG
 
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JMSF050E17+           AGCTACACAAAAACTACCAAAAAGGATAACAGAAACTCCTCTGCGCTTTTTCAGACGCCC
                      ____________________________________________________________
consensus             AGCTACACAAAAACTACCAAAAAGGATAACAGAAACTCCTCTGCGCTTTTTCAGACGCCC