clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF008P13 | Sequence | 606 | 002466 (4) | emb|CDP11719.1| | 7e-40 | unnamed protein product [Coffea canephora] | 683 | 001200 (4) | ref|XP_011074767.1| | 3e-88 | PREDICTED: DEAD-box ATP-dependent RNA helicase 5 [Sesamum indicum] |
JMFF012H10 | Sequence | 579 | 002466 (4) | emb|CDP11719.1| | 1e-33 | unnamed protein product [Coffea canephora] | 733 | 001200 (4) | ref|XP_011074767.1| | 3e-87 | PREDICTED: DEAD-box ATP-dependent RNA helicase 5 [Sesamum indicum] |
JMFF044N19 | Sequence | 638 | 002466 (4) | gb|EYU29070.1| | 9e-45 | hypothetical protein MIMGU_mgv1a006477mg [Erythranthe guttata] | 412 | 001200 (4) | |||
JMSF050D20 | Sequence | 655 | 002466 (4) | gb|EYU29070.1| | 3e-46 | hypothetical protein MIMGU_mgv1a006477mg [Erythranthe guttata] | 798 | 001200 (4) | ref|XP_011074767.1| | 1e-119 | PREDICTED: DEAD-box ATP-dependent RNA helicase 5 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMFF044N19+ AAGGCAAAGAGGATTCCTTGGCTTTTTCCCGTTTCTTTTGCTCATAA
JMFF008P13+ TGCTCATAA
JMSF050D20+ TGAAAGCACAAGGCAAAGAGGATTCCTTGGCTTTTTCCCGTTTCTTTTGCTCATAA
____________________________________________________________
consensus TGAAAGCACAAGGCAAAGAGGATTCCTTGGCTTTTTCCCGTTTCTTTTGCTCATAA
. : . : . : . : . : . :
JMFF044N19+ CGTGCATTATGGCTGGGATGCCAAATGCCAATGTCTTACCTGACCCGGTTGCTGCTATCC
JMFF008P13+ CGTGCATTATGGCTGGGATGCCAAATGCCAATGTCTTACCTGACCCGGTTGCTGCTATCC
JMFF012H10+ TGCCAAATGCCAATGTCTTACCTGACCCGGTTGCTGCTATCC
JMSF050D20+ CGTGCATTATGGCTGGGATGCCAAATGCCAATGTCTTACCTGACCCGGTTGCTGCTATCC
____________________________________________________________
consensus CGTGCATTATGGCTGGGATGCCAAATGCCAATGTCTTACCTGACCCGGTTGCTGCTATCC
. : . : . : . : . : . :
JMFF044N19+ CAATAAAATCTCGGCCGTTCAACAGAAACGGCCAGGAATGGGACTGAATTGGAGATGGCT
JMFF008P13+ CAATAAAATCTCGGCCGTTCAACAGAAACGGCCAGGAATGGGACTGAATTGGAGATGGCT
JMFF012H10+ CAATAAAATCTCGGCCGTTCAACAGAAACGGCCAGGAATGGGACTGAATTGGAGATGGCT
JMSF050D20+ CAATAAAATCTCGGCCGTTCAACAGAAACGGCCAGGAATGGGACTGAATTGGAGATGGCT
____________________________________________________________
consensus CAATAAAATCTCGGCCGTTCAACAGAAACGGCCAGGAATGGGACTGAATTGGAGATGGCT
. : . : . : . : . : . :
JMFF044N19+ TTTCAAAATCTTTGCAGCATTCCAACACCTTATCAGGAAGCCCCGAGTCCGAGAATTTCT
JMFF008P13+ TTTCAAAATCTTTGCAGCATTCCAACACCTTATCAGGAAGCCCCGAGTCCGAGAATTTCT
JMFF012H10+ TTTCAAAATCTTTGCAGCATTCCAACACCTTATCAGGAAGCCCCGAGTCCGAGAATTTCT
JMSF050D20+ TTTCAAAATCTTTGCAGCATTCCAACACCTTATCAGGAAGCCCCGAGTCCGAGAATTTCT
____________________________________________________________
consensus TTTCAAAATCTTTGCAGCATTCCAACACCTTATCAGGAAGCCCCGAGTCCGAGAATTTCT
. : . : . : . : . : . :
JMFF044N19+ CCAAAGCTTTAAACTTTAAATTGTTCACATCTTTCCCAGAAACGACGACTCCCTCACTGC
JMFF008P13+ CCAAAGCTTTAAACTTTAAATTGTTCACATCTTTCCCAGAAACGACGACTCCCTCACTGC
JMFF012H10+ CCAAAGCTTTAAACTTTAAATTGTTCACATCTTTCCCAGAAACGACGACTCCCTCACTGC
JMSF050D20+ CCAAAGCTTTAAACTTTAAATTGTTCACATCTTTCCCAGAAACGACGACTCCCTCACTGC
____________________________________________________________
consensus CCAAAGCTTTAAACTTTAAATTGTTCACATCTTTCCCAGAAACGACGACTCCCTCACTGC
. : . : . : . : . : . :
JMFF044N19+ TTTCCATAATCTCAACTGACCCATTGTTCGAAACCTCTACTCCTTCCTTATTATTCGCCT
JMFF008P13+ TTTCCATAATCTCAACTGACCCATTGTTCGAAACCTCTACTCCTTCCTTATTATTCGCCT
JMFF012H10+ TTTCCATAATCTCAACTGACCCATTGTTCGAAACCTCTACTCCTTCCTTATTATTCGCCT
JMSF050D20+ TTTCCATAATCTCAACTGACCCATTGTTCGAAACCTCTACTCCTTCCTTATTATTCGCCT
____________________________________________________________
consensus TTTCCATAATCTCAACTGACCCATTGTTCGAAACCTCTACTCCTTCCTTATTATTCGCCT
. : . : . : . : . : . :
JMFF044N19+ TTCCCGATATATCCACCGACCCATTAAGTCCTTCGATCTCCCCAACATGATCTTTGGCCT
JMFF008P13+ TTCCCGATATATCCACCGACCCATTAAGTCCTTCGATCTCCCCAACATGATCTTTGGCCT
JMFF012H10+ TTCCCGATATATCCACCGACCCATTAAGTCCTTCGATCTCCCCAACATGATCTTTGGCCT
JMSF050D20+ TTCCCGATATATCCACCGACCCATTAAGTCCTTCGATCTCCCCAACATGATCTTTGGCCT
____________________________________________________________
consensus TTCCCGATATATCCACCGACCCATTAAGTCCTTCGATCTCCCCAACATGATCTTTGGCCT
. : . : . : . : . : . :
JMFF044N19+ CCTCGTCATCCTTGTGTTTCTGTTTCTTCTTCTTCTTCTTCTCTTTATTAGACTCTCTTA
JMFF008P13+ CCTCGTCATCCTTGTGTTTCTGTTTCTTCTTCTTCTTCTTCTCTTTATTAGACTCTCTTA
JMFF012H10+ CCTCGTCATCCTTGTGTTTCTGTTTCTTCTTCTTCTTCTTCTCTTTATTAGACTCTCTTA
JMSF050D20+ CCTCGTCATCCTTGTGTTTCTGTTTCTTCTTCTTCTTCTTCTCTTTATTAGACTCTCTTA
____________________________________________________________
consensus CCTCGTCATCCTTGTGTTTCTGTTTCTTCTTCTTCTTCTTCTCTTTATTAGACTCTCTTA
. : . : . : . : . : . :
JMFF044N19+ CGATTTCGGGCTCTGGCTCGGCCTCTGGGTGTTCAAGCTTTCGCTTGTGCTTCTTCTTAG
JMFF008P13+ CGATTTCGGGCTCTGGCTCGGCCTCTGGGTGTTCAAGCTTTCGCTTGTGCTTCTTCTTAG
JMFF012H10+ CGATTTCGGGCTCTGGCTCGGCCTCTGGGTGTTCAAGCTTTCGCTTGTGCTTCTTCTTAG
JMSF050D20+ CGATTTCGGGCTCTGGCTCGGCCTCTGGGTGTTCAAGCTTTCGCTTGTGCTTCTTCTTAG
____________________________________________________________
consensus CGATTTCGGGCTCTGGCTCGGCCTCTGGGTGTTCAAGCTTTCGCTTGTGCTTCTTCTTAG
. : . : . : . : . : . :
JMFF044N19+ ATTTGATCTCGTGATTTTCAATGGTGCCGGAGGTTAGGGGCTCTGAGAGGATTGCAGTGT
JMFF008P13+ ATTTGATCTCGTGATTTTCAATGGTGCCGGAGGTTAGGGGCTCTGAGAGGATTGCAGTGT
JMFF012H10+ ATTTGATCTCGTGATTTTCAATGGTGCCGGAGGTTAGGGGCTCTGAGAGGATTGCAGTGT
JMSF050D20+ ATTTGATCTCGTGATTTTCAATGGTGCCGGAGGTTAGGGGCTCTGAGAGGATTGCAGTGT
____________________________________________________________
consensus ATTTGATCTCGTGATTTTCAATGGTGCCGGAGGTTAGGGGCTCTGAGAGGATTGCAGTGT
. : . : . : . : . : . :
JMFF044N19+ CATGGTGCTTTCTACCCATGGCTGCTGAAACCGGTAGAGAAGTGAAAACCC
JMFF008P13+ CATGGTGCTTTCTACCCATGGCTGCTGAAACCGGTAGAGAAGTGAAAACCC
JMFF012H10+ CATGGTGCTTTCTACCCATGGCTGCTGAAACCGGTAGAGAAGTGAAAACCC
JMSF050D20+ CATGGTGCTTT-TACCCATGGCTGCTGAAACCGGTAGAGAAGTGAAAACCCTAAACCCCC
____________________________________________________________
consensus CATGGTGCTTTCTACCCATGGCTGCTGAAACCGGTAGAGAAGTGAAAACCCTAAACCCCC