Contig 002462:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050M21Sequence613002462 (2)ref|XP_009588628.1|2e-43PREDICTED: transcription initiation factor TFIID subunit 12b-like [Nicotiana to252022410
JMSF049L01Sequence668002462 (2)ref|XP_010540091.1|2e-31PREDICTED: transcription initiation factor TFIID subunit 12b [Tarenaya hassleri

Alignment

This contig is upended


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JMSF049L01+                                                               CTGCTGCT
                      ____________________________________________________________
consensus                                                                 CTGCTGCT
 
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JMFF050M21+                                   GTTGCTGCTGTACAATTTGGGATAACTGTTGTTGGT
JMSF049L01+           GCTGCATCTGGGGATGCCCCATTTGTTGCTGCTGTACAATTTGGGATAACTGTTGTTGGT
                      ____________________________________________________________
consensus             GCTGCATCTGGGGATGCCCCATTTGTTGCTGCTGTACAATTTGGGATAACTGTTGTTGGT
 
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JMFF050M21+           TCAAACCCATTGAATTNTGATGTAACTGTTGATTTGAAGCTAATTGCTGCTGAATAAGTA
JMSF049L01+           TCAAACCCATTGAATTTTGATGTAACTGTTGATTTGAAGCTAATTGCTGCTGAATAAGTA
                      ____________________________________________________________
consensus             TCAAACCCATTGAATTTTGATGTAACTGTTGATTTGAAGCTAATTGCTGCTGAATAAGTA
 
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JMFF050M21+           ATTGCCTCTGCTGCTGCTGAAGACGGAATGAAGGGGAATTTGGTGAAGAAGATAATGTAG
JMSF049L01+           ATTGCCTCTGCTGCTGCTGAAGACGGAATGAAGGGGAATTTGGTGAAGAAGATAATGTAG
                      ____________________________________________________________
consensus             ATTGCCTCTGCTGCTGCTGAAGACGGAATGAAGGGGAATTTGGTGAAGAAGATAATGTAG
 
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JMFF050M21+           GCATTTGCTTTAACCACTGTTGCTGAGCTAAAGTGTTCTGTATCATAGCAGATTGAACAT
JMSF049L01+           GCATTTGCTTTAACCACTGTTGCTGAGCTAAAGTGTTCTGTATCATAGCAGATTGAACAT
                      ____________________________________________________________
consensus             GCATTTGCTTTAACCACTGTTGCTGAGCTAAAGTGTTCTGTATCATAGCAGATTGAACAT
 
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JMFF050M21+           TTGGAGTCAATCCAGATAACTGAGAATTCATAAATGACGTCCTTTGAAGGTTCTGTGCCT
JMSF049L01+           TTGGAGTCAATCCAGATAACTGAGAATTCATAAATGACGTCCTTTGAAGGTTCTGTGCCT
                      ____________________________________________________________
consensus             TTGGAGTCAATCCAGATAACTGAGAATTCATAAATGACGTCCTTTGAAGGTTCTGTGCCT
 
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JMFF050M21+           GATTGGAGGTGAGCGGAGTTTGCTGAGACACTTGTTGCCTCAGGTGGGCCGGGTTCATCC
JMSF049L01+           GATTGGAGGTGAGCGGAGTTTGCTGAGACACTTGTTGCCTCAGGTGGGCCGGGTTCATCC
                      ____________________________________________________________
consensus             GATTGGAGGTGAGCGGAGTTTGCTGAGACACTTGTTGCCTCAGGTGGGCCGGGTTCATCC
 
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JMFF050M21+           TTTGCTGGGCATAAAGGGATCCATTGGCTCTAAGTTGAGAGCTCAAATTTAGAGATCCCA
JMSF049L01+           TTTGCTGGGCATAAAGGGATCCATTGGCTCTAAGTTGAGAGCTCAAATTTAGAGATCCCA
                      ____________________________________________________________
consensus             TTTGCTGGGCATAAAGGGATCCATTGGCTCTAAGTTGAGAGCTCAAATTTAGAGATCCCA
 
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JMFF050M21+           TCATCCCCATTGCCTGAATTCCCTGCAATGGCTGCCCATGGGAGCTCCCTGAATGCAGCT
JMSF049L01+           TCATCCCCATTGCCTGAATTCCCTGCAATGGCTGCCCATGGGAGCTCCCTGAATGCAGCT
                      ____________________________________________________________
consensus             TCATCCCCATTGCCTGAATTCCCTGCAATGGCTGCCCATGGGAGCTCCCTGAATGCAGCT
 
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JMFF050M21+           GAGATCCCTGCACCAAACCAGTCTTCTGCCGAGGC                         
JMSF049L01+           GAGATCCCTGCACCAAACCAGTCTTCTGCCGAGGCTCGAAAATTGGATCTTCTGGAGCAG
                      ____________________________________________________________
consensus             GAGATCCCTGCACCAAACCAGTCTTCTGCCGAGGCTCGAAAATTGGATCTTCTGGAGCAG
 
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JMSF049L01+           AGAAGGAAGCTTGAGCGAAAAGCTTTGTTATGAGAAATAGGTTTCCGGCGAAGCTGACAG
                      ____________________________________________________________
consensus             AGAAGGAAGCTTGAGCGAAAAGCTTTGTTATGAGAAATAGGTTTCCGGCGAAGCTGACAG
 
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JMSF049L01+           GAAGAGGAATAGGAAGAGGGTTTCCGGTGGCAGAGATGAGATGCTTCTTCCCACTGGTCC
                      ____________________________________________________________
consensus             GAAGAGGAATAGGAAGAGGGTTTCCGGTGGCAGAGATGAGATGCTTCTTCCCACTGGTCC