Contig 002460:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS009D12Sequence610002460 (8)ref|XP_009771911.1|2e-105PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Nicotiana sylvestris] r
JMSF015H03Sequence221002460 (8)759014041 (8)gb|EPS66777.1|9e-152hypothetical protein M569_07999 [Genlisea aurea]
JMSF020N14Sequence451002460 (8)ref|XP_009758663.1|1e-91PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X3 [Nicotiana sy806014041 (8)gb|EPS66777.1|1e-123hypothetical protein M569_07999 [Genlisea aurea]
JMSF022E20Sequence707002460 (8)ref|XP_009771911.1|5e-120PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Nicotiana sylvestris] r760014041 (8)gb|EPS66777.1|6e-120hypothetical protein M569_07999 [Genlisea aurea]
JMSF033A20Sequence707002460 (8)ref|XP_009771911.1|1e-120PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Nicotiana sylvestris] r658014041 (8)gb|EPS66777.1|5e-94hypothetical protein M569_07999 [Genlisea aurea]
JMSF036L14Sequence682002460 (8)ref|XP_009771911.1|8e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Nicotiana sylvestris] r712014041 (8)gb|EPS66777.1|2e-106hypothetical protein M569_07999 [Genlisea aurea]
JMSF048B09Sequence709002460 (8)ref|XP_009771911.1|1e-120PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Nicotiana sylvestris] r811014041 (8)gb|EPS66777.1|3e-133hypothetical protein M569_07999 [Genlisea aurea]
JMSF049G03Sequence682002460 (8)ref|XP_009771911.1|8e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Nicotiana sylvestris] r759001512 (2)ref|XP_009610701.1|2e-84PREDICTED: cellulose synthase-like protein G3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF033A20+                      CATTCATCAAGTATAAAATGCCTCACATTCATCAAGGAAAGATGCTTTT
JMSF022E20+                        TTCATCAAGTATAAAATGCCTCACATTCATCAAGGAAAGATGCTTTT
JMSF036L14+                                                 TTCATCAAGGAAAGATGCTTTT
JMSF048B09+                        TTCATCAAGTATAAAATGCCTCACATTCATCAAGGAAAGATGCTTTT
JMSF049G03+                                                 TTCATCAAGGAAAGATGCTTTT
                      ____________________________________________________________
consensus                        CATTCATCAAGTATAAAATGCCTCACATTCATCAAGGAAAGATGCTTTT
 
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JMSF033A20+           CCCTTGATAATGCAAGAATTCTTCCAGGAGTTCCAACAACAATGTGAGGGCATTCATTCT
JMSF020N14+                                                   AATGTGAGGGCATTCATTCT
JMSF022E20+           CCCTTGATAATGCAAGAATTCTTCCAGGAGTTCCAACAACAATGTGAGGGCATTCATTCT
JMSF036L14+           CCCTTGATAATGCAAGAATTCTTCCAGGAGTTCCAACAACAATGTGAGGGCATTCATTCT
JMSF048B09+           CCCTTGATAATGCAAGAATTCTTCCAGGAGTTCCAACAACAATGTGAGGGCATTCATTCT
JMFS009D12+                                     GGAGTTCCAACAACAATGTGAGGGCATTCATTCT
JMSF049G03+           CCCTTGATAATGCAAGAATCCTTCCAGGAGTTCCAACAACAATGTGAGGGCATTCATTCT
                      ____________________________________________________________
consensus             CCCTTGATAATGCAAGAATTCTTCCAGGAGTTCCAACAACAATGTGAGGGCATTCATTCT
 
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JMSF033A20+           TTAGAAGATCCTTGTGAATTGTTATGTTAACACCACCATAAAAAACAGCAACCTTGATAT
JMSF020N14+           TTAGAAGATCNTTGTGAATTGTTATGTTAACACCACCATAAAAAACAGCAACCTTGATAT
JMSF022E20+           TTAGAAGATCCTTGTGAATTGTTATGTTAACACCACCATAAAAAACAGCAACCTTGATAT
JMSF036L14+           TTAGAAGATCCTTGTGAATTGTTATGTTAACACCACCATAAAAAACAGCAACCTTGATAT
JMSF048B09+           TTAGAAGATCCTTGTGAATTGTTATGTTAACACCACCATAAAAAACAGCAACCTTGATAT
JMFS009D12+           TTAGAAGATCCTTGTGAATTGTTATGTTAACACCACCATAAAAAACAGCAACCTTGATAT
JMSF049G03+           TTAGAAGATCCTTGTGAATTGTTATGTTAACACCACCATAAAAAACAGCAACCTTGATAT
                      ____________________________________________________________
consensus             TTAGAAGATCCTTGTGAATTGTTATGTTAACACCACCATAAAAAACAGCAACCTTGATAT
 
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JMSF033A20+           CAGGCAAATATGTGCTGAACCTCTCAAATTCATGACAGATCTGATAAGCTAATTCTCTGG
JMSF020N14+           CAGGCAAATATGTGCTGAACCTCTCAAATTCATGACAGGTCTGATAAGCTAATTCTNTGG
JMSF022E20+           CAGGCAAATATGTGCTGAACCTCTCAAATTCATGACAGGTCTGATAAGCTAATTCTCTGG
JMSF036L14+           CAGGCAAATATGTGCTGAACCTCTCAAATTCATGACAGATCTGATAAGCTAATTCTCTGG
JMSF048B09+           CAGGCAAATATGTGCTGAACCTCTCAAATTCATGACAGATCTGATAAGCTAATTCTCTGG
JMFS009D12+           CAGGCAAATATGTGCTGAACCTCTCAAATTCATGACAGATCTGATAAGCTAATTCTCTGG
JMSF049G03+           CAGGCAAATATGTGCTGAACCTCTCAAATTCATGACAGATCTGATAAGCTAATTCTCTGG
                      ____________________________________________________________
consensus             CAGGCAAATATGTGCTGAACCTCTCAAATTCATGACAGATCTGATAAGCTAATTCTCTGG
 
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JMSF033A20+           TATGACATAGAACTAGGGCAGCAACTTGACCAGCAACGGGTTCAATCTGTTGCAAAGTTG
JMSF020N14+           TATGACATAGAACTAGGGCAGCAACTTGACCAGCAACGGGTTCAATCTGTTGCAAAGTTG
JMSF022E20+           TATGACATAGAACTAGGGCAGCAACTTGACCAGCAACGGGTTCAATCTGTTGCAAAGTTG
JMSF036L14+           TATGACATAGAACTAGGGCAGCAACTTGACCAGCAACGGGTTCAATCTGTTGCAAAGTTG
JMSF048B09+           TATGACATAGAACTAGGGCAGCAACTTGACCAGCAACGGGTTCAATCTGTTGCAAAGTTG
JMFS009D12+           TATGACATAGAACTAGGGCAGCAACTTGACCAGCAACGGGTTCAATCTGTTGCAAAGTTG
JMSF049G03+           TATGACATAGAACTAGGGCAGCAACTTGACCAGCAACGGGTTCAATCTGTTGCAAAGTTG
                      ____________________________________________________________
consensus             TATGACATAGAACTAGGGCAGCAACTTGACCAGCAACGGGTTCAATCTGTTGCAAAGTTG
 
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JMSF033A20+           ATAGAACAAATACTGCAGTTTTCCCCATTCCAGATTTGGCTTGGCAAATTACATCCATAC
JMSF020N14+           ATAGAACAAATACTGCAGTTTTCCCCATTCCAGATTTGGCTNGGCAAATTACATCCATAC
JMSF022E20+           ATAGAACAAATACTGCAGTTTTCCCCATTCCAGATTTGGCTTGGCAAATTACATCCATAC
JMSF036L14+           ATAGAACAAATACTGCAGTTTTCCCCATTCCAGATTTGGCTTGGCAAATTACATCCATAC
JMSF048B09+           ATAGAACAAATACTGCAGTTTTCCCCATTCCAGATTTGGCTTGGCAAATTACATCCATAC
JMFS009D12+           ATAGAACAAATACTGCAGTTTTCCCCATTCCAGATTTGGCTTGGCAAATTACATCCATAC
JMSF049G03+           ATAGAACAAATACTGCAGTTTTCCCCATTCCAGATTTGGCTTGGCAAATTACATCCATAC
                      ____________________________________________________________
consensus             ATAGAACAAATACTGCAGTTTTCCCCATTCCAGATTTGGCTTGGCAAATTACATCCATAC
 
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JMSF033A20+           CCAAAATAGCTTGGGGAATGCATTCATGTTGCACTTCAGATGGATGCTCAAACCCTGAAT
JMSF020N14+           CCAAAATAGCTTGGGGAANGCATTCATGNTGCACTTCAGATGGATGCTCAAACCNTGAAT
JMSF022E20+           CCAAAATAGCTTGGGGAATGCATTCATGTTGCACTTCAGATGGATGCTCAAACCCTGAAT
JMSF036L14+           CCAAAATAGCTTGGGGAATGCATTCATGTTGCACTTCAGATGGATGCTCAAACCCTGAAT
JMSF048B09+           CCAAAATAGCTTGGGGAATGCATTCATGTTGCACTTCAGATGGATGCTCAAACCCTGAAT
JMFS009D12+           CCAAAATAGCTTGGGGAATGCATTCATGTTGCACTTCAGATGGATGCTCAAACCCTGAAT
JMSF049G03+           CCAAAATAGCTTGGGGAATGCATTCATGTTGCACTTCAGATGGATGCTCAAACCCTGAAT
                      ____________________________________________________________
consensus             CCAAAATAGCTTGGGGAATGCATTCATGTTGCACTTCAGATGGATGCTCAAACCCTGAAT
 
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JMSF033A20+           CCACAATGGCTCGCAGTAGCTCTGGCTTTAGTAGAAAATCTCTGAAACCGGAGCTGTGAA
JMSF020N14+           CCACAATGGCTCGCAGTAGCTCTGGCTTTAGTAGAAAATCTCTGAAACCGGAGCTGTGAA
JMSF022E20+           CCACAATGGCTCGCAGTAGCTCTGGCTTTAGTAGAAAATCTCTGAAACCGGAGCTGTGAA
JMSF036L14+           CCACAATGGCTCGCAGTAGCTCTGGCTTTAGTAGAAAATCTCTGAAACCGGAGCTGTGAA
JMSF048B09+           CCACAATGGCTCGCAGTAGCTCTGGCTTTAGTAGAAAATCTCTGAAACCGGAGCTGTGAA
JMFS009D12+           CCACAATGGCTCGCAGTAGCTCTGGCTTTAGTAGAAAATCTCTGAAACCGGAGCTGTGAA
JMSF049G03+           CCACAATGGCTCGCAGTAGCTCTGGCTTTAGTAGAAAATCTCTGAAACCGGAGCTGTGAA
                      ____________________________________________________________
consensus             CCACAATGGCTCGCAGTAGCTCTGGCTTTAGTAGAAAATCTCTGAAACCGGAGCTGTGAA
 
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JMSF033A20+           TTCCAATATATCCCTTCTTGGCGGACTCGCCGTTGACTTTAGCGGCTACGGAATCGGGGG
JMSF020N14+           TTCCAATATATCCCTTCTCGGCGGACTCGCCGTTGACTTTAGCGGCTACGGAATCGGGGG
JMSF022E20+           TTCCAATATATCCCTTCTTGGCGGACTCGCCGTTGACTTTAGCGGCTACGGAATCGGGGG
JMSF036L14+           TTCCAATATATCCCTTCTTGGCGGACTCGCCGTTGACTTTAGCGGCTACGGAATCGGGGG
JMSF048B09+           TTCCAATATATCCCTTCTTGGCGGACTCGCCGTTGACTTTAGCGGCTACGGAATCGGGGG
JMFS009D12+           TTCCAATATATCCCTTCTTGGCGGACTCGCCGTTGACTTTAGCGGCTACGGAATCGGGGG
JMSF015H03+                              GGCGGACTCGCCGTTGACTTTAGCGGCTACGGAATCGGGGG
JMSF049G03+           TTCCAATATATCCCTTCTTGGCGGACTCGCCGTTGACTTTAGCGGCTACGGAATCGGGGG
                      ____________________________________________________________
consensus             TTCCAATATATCCCTTCTTGGCGGACTCGCCGTTGACTTTAGCGGCTACGGAATCGGGGG
 
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JMSF033A20+           CTTTTTCGTCTTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCGTCGTTCTCCTTGT
JMSF020N14+           CTTTTTCGTCT                                                 
JMSF022E20+           CTTTTTCGTCTTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCGTCGTTCTCCTTGT
JMSF036L14+           CTTTTTCGTCTTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCGTCGTTCTCCTTGT
JMSF048B09+           CTTTTTCGTCTTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCGTCGTTCTCCTTGT
JMFS009D12+           CTTTTTCGTCTTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCGTCGTTCTCCTTGT
JMSF015H03+           CTTTTTCGTCTTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCGTCGTTCTCCTTGT
JMSF049G03+           CTTTTTCGTCTTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCGTCGTTCTCCTTGT
                      ____________________________________________________________
consensus             CTTTTTCGTCTTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCGTCGTTCTCCTTGT
 
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JMSF033A20+           TTTCTCCCATTTGCTGCTTATTCTAGTCAAATCTGACGATGAACACGAGCTATGCTTTCT
JMSF022E20+           TTTCTCCCATTTGCTGCTTATTCTAGTCAAATCTGACGATGAACACGAGCTATGCTTTCT
JMSF036L14+           TTTCTCCCATTTGCTGCTTATTCTAGTCAAATCTGACGATGAACACGAGCTATGCTTTCT
JMSF048B09+           TTTCTCCCATTTGCTGCTTATTCTAGTCAAATCTGACGATGAACACGAGCTATGCTTTCT
JMFS009D12+           TTTCTCCCATTTGCTGCTTATTCTAGTCAAATCTGACGATGAACACGAGCTATGCTTTCT
JMSF015H03+           TTTCTCCCATTTGCTGCTTATTCTAGTCAAATCTGACGATGAACACGAGCTATGCTTTCT
JMSF049G03+           TTTCTCCCATTTGCTGCTTATTCTAGTCAAATCTGACGATGAACACGAGCTATGCTTTCT
                      ____________________________________________________________
consensus             TTTCTCCCATTTGCTGCTTATTCTAGTCAAATCTGACGATGAACACGAGCTATGCTTTCT
 
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JMSF033A20+           GAAAAGAACTGGGGTTAGGGTTTGGATTCTGCAGAGAAAAATGTTAGGAAAAT       
JMSF022E20+           GAAAAGAACTGGGGTTAGGGTTTGGATTCTGCAGAGAAAAATGTTAGGAAAATTCGGA  
JMSF036L14+           GAAAAGAACTGGGGTTAGGGTTTGGATTCTGCAGAGAAAAATGTTAGGAAAATTCGGATC
JMSF048B09+           GAAAAGAACTGGGGTTAGGGTTTGGATTCTGCAGAGAAAAATGTTAGGAAAATTCGGATC
JMFS009D12+           GAAAAGAACTGGGGTTAGGGTTTGGATTCTGCAGAG                        
JMSF015H03+           GAAAAGAACTGGGGTTAGGGTTTGGATTCTGCAGAGAAAAATGTTAGGAAAATTCGGATC
JMSF049G03+           GAAAAGAACTGGGGTTAGGGTTTGGATTCTGCAGAGAAAAATGTTAGGAAAATTCGGATC
                      ____________________________________________________________
consensus             GAAAAGAACTGGGGTTAGGGTTTGGATTCTGCAGAGAAAAATGTTAGGAAAATTCGGATC