| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019N24 | Sequence | 607 | 002453 (8) | emb|CBI16256.3| | 3e-96 | unnamed protein product [Vitis vinifera] | 584 | 002453 (8) | emb|CDP06706.1| | 1e-97 | unnamed protein product [Coffea canephora] |
| JMFF020I13 | Sequence | 454 | 002453 (8) | emb|CBI16256.3| | 2e-90 | unnamed protein product [Vitis vinifera] | 679 | 002453 (8) | emb|CBI16256.3| | 8e-96 | unnamed protein product [Vitis vinifera] |
| JMFF020J01 | Sequence | 593 | 002453 (8) | emb|CBI31516.3| | 1e-91 | unnamed protein product [Vitis vinifera] | |||||
| JMFN015M17 | Sequence | 629 | 002453 (8) | emb|CDP06706.1| | 2e-97 | unnamed protein product [Coffea canephora] | |||||
| JMSF048M04 | Sequence | 622 | 002453 (8) | emb|CBI16256.3| | 6e-96 | unnamed protein product [Vitis vinifera] | 578 | 002453 (8) | emb|CBI16256.3| | 4e-96 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMFF019N24+ CCTAGTCTC
rJMFF020I13+ AATCNTAGTCTC
JMFN015M17- CTC
JMFF019N24- CTGGAATCCTAGTCTC
rJMSF048M04+ CTGGAATCCTAGTCTC
JMFF020I13- CTGGAATCCTAGTCTC
JMSF048M04- GTACCTCTGGAATCCTAGTCTC
____________________________________________________________
consensus GTACCTCTGGAATCCTAGTCTC
. : . : . : . : . : . :
rJMFF019N24+ AACTCTCAAGTCGAAGTTCTCTCCACACAGCAAACATGGGGAAGACACGTGGTATGGGAG
rJMFF020I13+ AACTCTCAAGTCGAAGTTCTCTCCACACAGCAAACATGGGGAAGACACGTGGTATGGGAG
JMFN015M17- AACTCTCAAGTCGAAGTTCTCTCCACACAGCAAACATGGGGAAGACACGTGGTATGGGAG
JMFF019N24- AACTCTCAAGTCGAAGTTCTCTCCACACAGCAAACATGGGGAAGACACGTGGTATGGGAG
rJMSF048M04+ GACTCTCAAGTCGAAGTTCTCTCCACACAGCAAACATGGGGAAGACACGTGGTATGGGAG
JMFF020I13- AACTCTCAAGTCGAAGTTCTCTCCACACAGCAAACATGGGGAAGACACGTGGTATGGGAG
rJMFF020J01+ CGTGGTATGGGAG
JMSF048M04- GACTCTCAAGTCGAAGTTCTCTCCACACAGCAAACATGGGGAAGACACGTGGTATGGGAG
____________________________________________________________
consensus AACTCTCAAGTCGAAGTTCTCTCCACACAGCAAACATGGGGAAGACACGTGGTATGGGAG
. : . : . : . : . : . :
rJMFF019N24+ CTGGACGCAAGCTGAAGTCCCACCGCATAAGGCAGAGGTGGGCTGATAAGGCCTATAAGA
rJMFF020I13+ CTGGACGCAAGCTGAAGTCCCACCGCATAAGGCAGAGGTGGGCTGATAAGGCCTATAAGA
JMFN015M17- CTGGACGCAAGCTGAAGTCCCACCGCATAAGGCAGAGGTGGGCTGATAAGGCCTATAAGA
JMFF019N24- CTGGACGCAAGCTGAAGTCCCACCGCATAAGGCAGAGGTGGGCTGATAAGGCCTATAAGA
rJMSF048M04+ CTGGACGCAAGCTGAAGTCCCACCGCATAAGGCAGAGGTGGGCTGATAAGGCCTATAAGA
JMFF020I13- CTGGACGCAAGCTGAAGTCCCACCGCATAAGGCAGAGGTGGGCTGATAAGGCCTATAAGA
rJMFF020J01+ CTGGACGCAAGCTGAAGTCCCACCGCATAAGGCAGAGGTGGGCTGATAAGGCCTATAAGA
JMSF048M04- CTGGACGCAAGCTGAAGTCCCACCGCATAAGGCAGAGGTGGGCTGATAAGGCCTATAAGA
____________________________________________________________
consensus CTGGACGCAAGCTGAAGTCCCACCGCATAAGGCAGAGGTGGGCTGATAAGGCCTATAAGA
. : . : . : . : . : . :
rJMFF019N24+ AATCTCATCTTGGGAATGAATGGAAGAAACCATTTGCTGGTTCTTCCCATGCAAAAGGCA
rJMFF020I13+ AATCTCATCTTGGGAATGAATGGAAGAAACCATTTGCTGGTTCTTCCCATGCAAAAGGCA
JMFN015M17- AATCTCATCTTGGGAATGAATGGAAGAAACCATTTGCTGGTTCTTCCCATGCAAAAGGCA
JMFF019N24- AATCTCATCTTGGGAATGAATGGAAGAAACCATTTGCTGGTTCTTCCCATGCAAAAGGCA
rJMSF048M04+ AATCTCATCTTGGGAATGAATGGAAGAAACCATTTGCTGGTTCTTCCCATGCAAAAGGCA
JMFF020I13- AATCTCATCTTGGGAATGAATGGAAGAAACCATTTGCTGGTTCTTCCCATGCAAAAGGCA
rJMFF020J01+ AATCTCATCTTGGGAATGAATGGAAGAAACCATTTGCTGGTTCTTCCCATGCAAAAGGCA
JMSF048M04- AATCTCATCTTGGGAATGAATGGAAGAAACCATTTGCTGGTTCTTCCCATGCAAAAGGCA
____________________________________________________________
consensus AATCTCATCTTGGGAATGAATGGAAGAAACCATTTGCTGGTTCTTCCCATGCAAAAGGCA
. : . : . : . : . : . :
rJMFF019N24+ TTGTGCTTGAGAAGATAGGCATTGAAGCTAAGCAGCCAAACTCTGCTATTCGAAAATGTG
rJMFF020I13+ TTGTGCTTGAGAAGATAGGCATTGAAGCTAAGCAGCCAAACTCTGCTATTCGAAAATGTG
JMFN015M17- TTGTGCTTGAGAAGATAGGCATTGAAGCTAAGCAGCCAAACTCTGCTATTCGAAAATGTG
JMFF019N24- TTGTGCTTGAGAAGATAGGCATTGAAGCTAAGCAGCCAAACTCTGCTATTCGAAAATGTG
rJMSF048M04+ TTGTGCTTGAGAAGATAGGCATTGAAGCTAAGCAGCCAAACTCTGCTATTCGAAAATGTG
JMFF020I13- TTGTGCTTGAGAAGATAGGCATTGAAGCTAAGCAGCCAAACTCTGCTATTCGAAAATGTG
rJMFF020J01+ TTGTGCTTGAGAAGATAGGCATTGAAGCTAAGCAGCCAAACTCTGCTATTCGAAAATGTG
JMSF048M04- TTGTGCTTGAGAAGATAGGCATTGAAGCTAAGCAGCCAAACTCTGCTATTCGAAAATGTG
____________________________________________________________
consensus TTGTGCTTGAGAAGATAGGCATTGAAGCTAAGCAGCCAAACTCTGCTATTCGAAAATGTG
. : . : . : . : . : . :
rJMFF019N24+ CTAGGGTTCAACTCATTAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCCAATGATGGTT
rJMFF020I13+ CTAGGGTTCAACTCATTAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCCAATGATGGTT
JMFN015M17- CTAGGGTTCAACTCATTAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCCAATGATGGTT
JMFF019N24- CTAGGGTTCAACTCATTAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCCAATGATGGTT
rJMSF048M04+ CTAGGGTTCAACTCATTAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCCAATGATGGTT
JMFF020I13- CTAGGGTTCAACTCATTAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCCAATGATGGTT
rJMFF020J01+ CTAGGGTTCAACTCATTAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCCAATGATGGTT
JMSF048M04- CTAGGGTTCAACTCATTAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCCAATGATGGTT
____________________________________________________________
consensus CTAGGGTTCAACTCATTAAGAATGGGAAAAAGATTGCTGCTTTTGTCCCCAATGATGGTT
. : . : . : . : . : . :
rJMFF019N24+ GTTTGAACTATATCGAAGAAAATGACGAGGTATTGATTGCTGGATTTGGTCGTAAAGGTC
rJMFF020I13+ GTTTGAACTATATCGAAGAAAATGACGAGGTATTGATTGCTGGATTTGGTCGTAAAGGTC
JMFN015M17- GTTTGAACTATATCGAAGAAAATGACGAGGTATTGATTGCTGGATTTGGTCGTAAAGGTC
JMFF019N24- GTTTGAACTATATCGAAGAAAATGACGAGGTATTGATTGCTGGATTTGGTCGTAAAGGTC
rJMSF048M04+ GTTTGAACTATATCGAAGAAAATGACGAGGTATTGATTGCTGGATTTGGTCGTAAAGGTC
JMFF020I13- GTTTGAACTATATCGAAGAAAATGACGAGGTATTGATTGCTGGATTTGGTCGTAAAGGTC
rJMFF020J01+ GTTTGAACTATATCGAAGAAAATGACGAGGTATTGATTGCTGGATTTGGTCGTAAAGGTC
JMSF048M04- GTTTGAACTATATCGAAGAAAATGACGAGGTATTGATTGCTGGATTTGGTCGTAAAGGTC
____________________________________________________________
consensus GTTTGAACTATATCGAAGAAAATGACGAGGTATTGATTGCTGGATTTGGTCGTAAAGGTC
. : . : . : . : . : . :
rJMFF019N24+ ATGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTGGTGAAGGTCTCTGGCGTTTCTC
rJMFF020I13+ ATGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTGGTGAAGGTCTCTGGCGTTTCTC
JMFN015M17- ATGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTGGTGAAGGTCTCTGGCGTTTCTC
JMFF019N24- ATGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTGGTGAAGGTCTCTGGCGTTTCTC
rJMSF048M04+ ATGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTGGTGAAGGTCTCTGGCGTTTCTC
JMFF020I13- ATGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTGGTGAAGGTCTCTGGCGTTTCTC
rJMFF020J01+ ATGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTGGTGAAGGTCTCTGGCGTTTCTC
JMSF048M04- ATGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTGGTGAAGGTCTCTGGCGTTTCTC
____________________________________________________________
consensus ATGCCGTGGGTGATATTCCTGGTGTCAGGTTCAAGGTGGTGAAGGTCTCTGGCGTTTCTC
. : . : . : . : . : . :
rJMFF019N24+ TACTTGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCTTAGTTTGCCTATCCCCCCT
rJMFF020I13+ TACTTGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCTT
JMFN015M17- TACTTGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCTTAG
JMFF019N24- TACTTGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCTTAGTTTGCCTATCCCCCCT
rJMSF048M04+ TACTTGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCTTAGTTTGCCTATCCCCCCT
JMFF020I13- TACTTGCCCTCTTCAA
rJMFF020J01+ TACTTGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCTTAG
JMSF048M04- TACTTGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCTTAGTTTGCCTATCCCCCCT
____________________________________________________________
consensus TACTTGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCTTAGTTTGCCTATCCCCCCT
. : . : . : . : . : . :
rJMFF019N24+ CAGTGTTTTGTTGGTCTCAAGAATTGTGATGAACTTTTTTCTGTTTCAGAGTTCTTATGT
JMFF019N24- CAGTGTTTTGTTGGTCTCAAGAATTGTGATGAACTTTTTTCTGTTTCAGAGTTCTTATGT
rJMSF048M04+ CAGTGTTTTGTTGGTCTCAAGAATTGTGATGAACTTTTTTCTGTTTCAGAGTTCTTATGT
JMSF048M04- CAGTGTTTTGTTGGTCTCAAGAATTGTGATGAACTTTTTTCTGTTTCAGAGTTCTTATGT
____________________________________________________________
consensus CAGTGTTTTGTTGGTCTCAAGAATTGTGATGAACTTTTTTCTGTTTCAGAGTTCTTATGT
. : . : . : . : . : . :
rJMFF019N24+ GGTGGAGAAACAATTTTGAATCTAGTT
JMFF019N24- GGTGGAGAAACAATTTTGAATCTAGTTGGAATTTTGACTGTTATTGATTTA
rJMSF048M04+ GGTGGAGAAACAATTT
JMSF048M04- GGTGGAGAAACAATTTTGAATCTAGTTGGAATTTTGACTGTTATTGATTTAAAAAAAAAA
____________________________________________________________
consensus GGTGGAGAAACAATTTTGAATCTAGTTGGAATTTTGACTGTTATTGATTTAAAAAAAAAA