Contig 002452:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022M13Sequence433002452 (4)721002998 (2)ref|XP_010651244.1|2e-120PREDICTED: uncharacterized protein LOC100260310 isoform X1 [Vitis vinifera]
JMSF025M18Sequence693002452 (4)gb|KDP22086.1|9e-42hypothetical protein JCGZ_25917 [Jatropha curcas]755000235 (181)ref|XP_004170962.1|1e-155PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like
JMSF031N09Sequence625002452 (4)gb|KDP22086.1|6e-25hypothetical protein JCGZ_25917 [Jatropha curcas]749000235 (181)ref|XP_004170962.1|7e-155PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like
JMSF048K20Sequence707002452 (4)gb|KDP22086.1|1e-41hypothetical protein JCGZ_25917 [Jatropha curcas]744002998 (2)gb|KJB21895.1|3e-58hypothetical protein B456_004G019700 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF025M18+ CCACTACCATAAATTCATATTCTCCCCAAAAGGATCTCCCATATAAG
JMSF048K20+ CCACTACCATAAATTCATATTCTCCCCAAAAGGATCTCCCATATAAG
                      ____________________________________________________________
consensus CCACTACCATAAATTCATATTCTCCCCAAAAGGATCTCCCATATAAG
 
. : . : . : . : . : . :
JMSF025M18+ CGGTCCCTGGTTACCCCAGGTTCATCCACCACAATGGCCCTGTTCCCCCCAACAAGTCGA
JMSF031N09+ TCATCCACCACAATGGCCCTGTTCCCCCCAACAAGTCGA
JMSF048K20+ CGGTCCCTGGTTACCCCAGGTTCATCCACCACAATGGCCCTGTTCCCCCCAACAAGTCGA
                      ____________________________________________________________
consensus CGGTCCCTGGTTACCCCAGGTTCATCCACCACAATGGCCCTGTTCCCCCCAACAAGTCGA
 
. : . : . : . : . : . :
JMSF025M18+ TTAAACAGCGCTGATTTGCCAACATTTGGCCTTCCAACAATTACAACTTTTGGAAGGAGA
JMSF031N09+ TTAAACAGCGCTGATTTGCCAACATTTGGCCTTCCAACAATTACAACTTTTGGAAGGAGA
JMSF048K20+ TTAAACAGCGCTGATTTGCCAACATTTGGCCTTCCAACAATTACAACTTTTGGAAGGAGA
                      ____________________________________________________________
consensus TTAAACAGCGCTGATTTGCCAACATTTGGCCTTCCAACAATTACAACTTTTGGAAGGAGA
 
. : . : . : . : . : . :
JMSF025M18+ TGATCAGGGACACTACTTGTACTTTTGAGTCTTTTCTGCTTCCGAGTTTCTTTCTCACCA
JMSF031N09+ TGATCAGGGACACTACTTGTACTTTTGAGTCTTTTCTGCTTCCGAGTTTCTTTCTCACCA
JMSF048K20+ TGATCAGGGACACTACTTGTACTTTTGAGTCTTTTCTGCTTCCGAGTTTCTTTCTCACCA
                      ____________________________________________________________
consensus TGATCAGGGACACTACTTGTACTTTTGAGTCTTTTCTGCTTCCGAGTTTCTTTCTCACCA
 
. : . : . : . : . : . :
JMSF025M18+ GTTTTGTCATCCTCGGTTCTCAATTGCCGAGATAAAGACTCTGAGAACTCCCGAGCAGCC
JMSF031N09+ GTTTTGTCATCCTCGGTTCTCAATTGCCGAGATAAAGACTCTGAGAACTCCCGAGCAGCC
JMFF022M13+ AACTCCCGAGCAGCC
JMSF048K20+ GTTTTGTCATCCTCGGTTCTCAATTGCCGAGATAAAGACTCTGAGAACTCCCGAGCAGCC
                      ____________________________________________________________
consensus GTTTTGTCATCCTCGGTTCTCAATTGCCGAGATAAAGACTCTGAGAACTCCCGAGCAGCC
 
. : . : . : . : . : . :
JMSF025M18+ TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
JMSF031N09+ TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
JMFF022M13+ TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
JMSF048K20+ TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
                      ____________________________________________________________
consensus TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
 
. : . : . : . : . : . :
JMSF025M18+ TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
JMSF031N09+ TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
JMFF022M13+ TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
JMSF048K20+ TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
                      ____________________________________________________________
consensus TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
 
. : . : . : . : . : . :
JMSF025M18+ GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
JMSF031N09+ GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
JMFF022M13+ GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
JMSF048K20+ GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
                      ____________________________________________________________
consensus GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
 
. : . : . : . : . : . :
JMSF025M18+ CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
JMSF031N09+ CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
JMFF022M13+ CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
JMSF048K20+ CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
                      ____________________________________________________________
consensus CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
 
. : . : . : . : . : . :
JMSF025M18+ CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
JMSF031N09+ CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
JMFF022M13+ CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
JMSF048K20+ CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
                      ____________________________________________________________
consensus CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
 
. : . : . : . : . : . :
JMSF025M18+ AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
JMSF031N09+ AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
JMFF022M13+ AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
JMSF048K20+ AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
                      ____________________________________________________________
consensus AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
 
. : . : . : . : . : . :
JMSF025M18+ GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCAC
JMSF031N09+ GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCAC
JMFF022M13+ GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCACATCGGAGAGACG
JMSF048K20+ GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCACATCGGAGAGACGACC
                      ____________________________________________________________
consensus GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCACATCGGAGAGACGACC