clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF022M13 | Sequence | 433 | 002452 (4) | 721 | 002998 (2) | ref|XP_010651244.1| | 2e-120 | PREDICTED: uncharacterized protein LOC100260310 isoform X1 [Vitis vinifera] | |||
JMSF025M18 | Sequence | 693 | 002452 (4) | gb|KDP22086.1| | 9e-42 | hypothetical protein JCGZ_25917 [Jatropha curcas] | 755 | 000235 (181) | ref|XP_004170962.1| | 1e-155 | PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like |
JMSF031N09 | Sequence | 625 | 002452 (4) | gb|KDP22086.1| | 6e-25 | hypothetical protein JCGZ_25917 [Jatropha curcas] | 749 | 000235 (181) | ref|XP_004170962.1| | 7e-155 | PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like |
JMSF048K20 | Sequence | 707 | 002452 (4) | gb|KDP22086.1| | 1e-41 | hypothetical protein JCGZ_25917 [Jatropha curcas] | 744 | 002998 (2) | gb|KJB21895.1| | 3e-58 | hypothetical protein B456_004G019700 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
JMSF025M18+ CCACTACCATAAATTCATATTCTCCCCAAAAGGATCTCCCATATAAG
JMSF048K20+ CCACTACCATAAATTCATATTCTCCCCAAAAGGATCTCCCATATAAG
____________________________________________________________
consensus CCACTACCATAAATTCATATTCTCCCCAAAAGGATCTCCCATATAAG
. : . : . : . : . : . :
JMSF025M18+ CGGTCCCTGGTTACCCCAGGTTCATCCACCACAATGGCCCTGTTCCCCCCAACAAGTCGA
JMSF031N09+ TCATCCACCACAATGGCCCTGTTCCCCCCAACAAGTCGA
JMSF048K20+ CGGTCCCTGGTTACCCCAGGTTCATCCACCACAATGGCCCTGTTCCCCCCAACAAGTCGA
____________________________________________________________
consensus CGGTCCCTGGTTACCCCAGGTTCATCCACCACAATGGCCCTGTTCCCCCCAACAAGTCGA
. : . : . : . : . : . :
JMSF025M18+ TTAAACAGCGCTGATTTGCCAACATTTGGCCTTCCAACAATTACAACTTTTGGAAGGAGA
JMSF031N09+ TTAAACAGCGCTGATTTGCCAACATTTGGCCTTCCAACAATTACAACTTTTGGAAGGAGA
JMSF048K20+ TTAAACAGCGCTGATTTGCCAACATTTGGCCTTCCAACAATTACAACTTTTGGAAGGAGA
____________________________________________________________
consensus TTAAACAGCGCTGATTTGCCAACATTTGGCCTTCCAACAATTACAACTTTTGGAAGGAGA
. : . : . : . : . : . :
JMSF025M18+ TGATCAGGGACACTACTTGTACTTTTGAGTCTTTTCTGCTTCCGAGTTTCTTTCTCACCA
JMSF031N09+ TGATCAGGGACACTACTTGTACTTTTGAGTCTTTTCTGCTTCCGAGTTTCTTTCTCACCA
JMSF048K20+ TGATCAGGGACACTACTTGTACTTTTGAGTCTTTTCTGCTTCCGAGTTTCTTTCTCACCA
____________________________________________________________
consensus TGATCAGGGACACTACTTGTACTTTTGAGTCTTTTCTGCTTCCGAGTTTCTTTCTCACCA
. : . : . : . : . : . :
JMSF025M18+ GTTTTGTCATCCTCGGTTCTCAATTGCCGAGATAAAGACTCTGAGAACTCCCGAGCAGCC
JMSF031N09+ GTTTTGTCATCCTCGGTTCTCAATTGCCGAGATAAAGACTCTGAGAACTCCCGAGCAGCC
JMFF022M13+ AACTCCCGAGCAGCC
JMSF048K20+ GTTTTGTCATCCTCGGTTCTCAATTGCCGAGATAAAGACTCTGAGAACTCCCGAGCAGCC
____________________________________________________________
consensus GTTTTGTCATCCTCGGTTCTCAATTGCCGAGATAAAGACTCTGAGAACTCCCGAGCAGCC
. : . : . : . : . : . :
JMSF025M18+ TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
JMSF031N09+ TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
JMFF022M13+ TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
JMSF048K20+ TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
____________________________________________________________
consensus TGCTTAGCTTCGCGCTCAAGAGAATCGACATCGAGGCTCTCTTCCTCGTCGTCCTCAGCG
. : . : . : . : . : . :
JMSF025M18+ TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
JMSF031N09+ TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
JMFF022M13+ TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
JMSF048K20+ TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
____________________________________________________________
consensus TCAGACCCTTCAATTTCAAGCAACTCATCTTCTTCCACTTCTTCTTCGCCGTAGAATTGA
. : . : . : . : . : . :
JMSF025M18+ GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
JMSF031N09+ GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
JMFF022M13+ GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
JMSF048K20+ GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
____________________________________________________________
consensus GCAGCGGCGGGTGGAAGGCAGTGCCGGCGGGAGAAATTCAGGAAGCAGCAGCGGCGGCGG
. : . : . : . : . : . :
JMSF025M18+ CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
JMSF031N09+ CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
JMFF022M13+ CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
JMSF048K20+ CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
____________________________________________________________
consensus CGGTGGTGGACGGAGGGCTGAAGCAGAGAGCGGGTGGAAAGAGAAACGGAGGTTGGAGTG
. : . : . : . : . : . :
JMSF025M18+ CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
JMSF031N09+ CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
JMFF022M13+ CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
JMSF048K20+ CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
____________________________________________________________
consensus CGAAGATAGGCGGGCGGAGAGGAAGAGCGAAGTGATACAGAGGAGAGGAGAGATAGAGAT
. : . : . : . : . : . :
JMSF025M18+ AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
JMSF031N09+ AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
JMFF022M13+ AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
JMSF048K20+ AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
____________________________________________________________
consensus AGAGAGAGCGGCATTTCTTCCTTTCTGAACTCCTCTCCTACAGATGAGATATGGCGGGGA
. : . : . : . : . : . :
JMSF025M18+ GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCAC
JMSF031N09+ GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCAC
JMFF022M13+ GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCACATCGGAGAGACG
JMSF048K20+ GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCACATCGGAGAGACGACC
____________________________________________________________
consensus GGGGTTTATCTGAGATTTTTGGATAAATTGCAAATGCAGTCCCACATCGGAGAGACGACC