Contig 002451:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020C20Sequence574002451 (9)emb|CDP02088.1|1e-80unnamed protein product [Coffea canephora]767004159 (8)ref|XP_007031533.1|9e-102Isocitrate/isopropylmalate dehydrogenase family protein isoform 1 [Theobroma ca
JMFF022H15Sequence506002451 (9)emb|CDP02088.1|7e-64unnamed protein product [Coffea canephora]760004159 (8)ref|XP_007031533.1|3e-101Isocitrate/isopropylmalate dehydrogenase family protein isoform 1 [Theobroma ca
JMFF027N08Sequence571002451 (9)emb|CDP02088.1|2e-80unnamed protein product [Coffea canephora]635004159 (8)ref|XP_011097423.1|1e-64PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial isoform
JMFF046C12Sequence511002451 (9)emb|CDP02088.1|1e-72unnamed protein product [Coffea canephora]
JMFF049P20Sequence628002451 (9)emb|CDP02088.1|3e-80unnamed protein product [Coffea canephora]579004159 (8)ref|XP_011097423.1|2e-45PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial isoform
JMSF010P12Sequence220002451 (9)760004159 (8)ref|XP_007031533.1|2e-104Isocitrate/isopropylmalate dehydrogenase family protein isoform 1 [Theobroma ca
JMSF036A20Sequence669002451 (9)emb|CDP02088.1|6e-106unnamed protein product [Coffea canephora]669004159 (8)ref|XP_011097423.1|3e-80PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial isoform
JMSF044L16Sequence823002451 (9)ref|XP_009768205.1|6e-141PREDICTED: isocitrate dehydrogenase [NADP] [Nicotiana sylvestris]783004159 (8)ref|XP_007031533.1|2e-106Isocitrate/isopropylmalate dehydrogenase family protein isoform 1 [Theobroma ca
JMSF048F16Sequence675002451 (9)emb|CDP02088.1|1e-96unnamed protein product [Coffea canephora]831004159 (8)ref|XP_011097423.1|1e-111PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial isoform

Alignment

This contig is upended


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JMSF044L16+                            CCAATGCCATTGATGATTCAGCAAATGCACGAATTGACTGATC
                      ____________________________________________________________
consensus                              CCAATGCCATTGATGATTCAGCAAATGCACGAATTGACTGATC
 
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JMSF044L16+           AACGTTATACATAGCAAGGGCAACACCAGGGCCTTTGAAATCATAGACATCAAGTTCCTC
                      ____________________________________________________________
consensus             AACGTTATACATAGCAAGGGCAACACCAGGGCCTTTGAAATCATAGACATCAAGTTCCTC
 
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JMSF036A20+                                                              TTTAATAAT
JMSF044L16+           CGGGGCTCCCCCATTTTCAGGCTCAAAAACCATTTTGAGCTTTCCTGCTCCTTTAATAAT
JMSF048F16+                                                              TTTAATAAT
                      ____________________________________________________________
consensus             CGGGGCTCCCCCATTTTCAGGCTCAAAAACCATTTTGAGCTTTCCTGCTCCTTTAATAAT
 
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JMSF036A20+           AGTATCAGTGGCACGATATTGATCACCAAAAGCATGCCTACCAATACAAATGGGTTTCTT
JMSF044L16+           AGTATCAGTGGCACGATATTGATCACCAAAAGCATGCCTACCAATACAAATGGGTTTCTT
JMFF049P20+                                         AGCATGCCTACCAATACAAATGGGTTTCTT
JMSF048F16+           AGTATCAGTGGCACGATATTGATCACC-AAAGCATGCCTACCAATACAAATGGGTTTCTT
                      ____________________________________________________________
consensus             AGTATCAGTGGCACGATATTGATCACCAAAAGCATGCCTACCAATACAAATGGGTTTCTT
 
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JMSF036A20+           CCAACCAGGAATAATTCTTGGAATATTTTTACATAGGATAGGCTCACGGAAAACAGTACC
JMSF044L16+           CCAACCAGGAATAATTCTTGGAATATTTTTACATAGGATAGGCTCACGGAAAACAGTACC
JMFF049P20+           CCAACCAGGAATAATTCTTGGAATA-TTTTACATAGGATAGGCTCACGGAAAACAGTACC
JMFF020C20+                                    TTTTTACATAGGATAGGCTCACGGAAAACAGTACC
JMFF046C12+                                                                      C
JMFF027N08+                                       TTACATAGGATAGGCTCACGGAAAACAGTACC
JMSF048F16+           CCAACCAGGAATAATTCTTGGAATATTTTTACATAGGATAGGCTCACGGAAAACAGTACC
                      ____________________________________________________________
consensus             CCAACCAGGAATAATTCTTGGAATATTTTTACATAGGATAGGCTCACGGAAAACAGTACC
 
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JMSF036A20+           GTTCAAAATGTTTCTTATTGTGCCATTGGGACTCTTCCACATAGACTTCAGTCCGAATTC
JMSF044L16+           GTTCAAAATGTTTCTTATTGTGCCATTGGGACTCTTCCACATAGACTTCAGTCCGAATTC
JMFF049P20+           GTTCAAAATGTTTCTTATTGTGCCATTGGGACTCTTCCACATAGACTTCAGTCCGAATTC
JMFF020C20+           GTTCAAAATGTTTCTTATTGTGCCATTGGGACTCTTCCACATAGACTTCAGTCCGAATTC
JMFF046C12+           GTTCAAAATGTTTCTTATTGTGCCATTGGGACTCTTCCACATAGACTTCAGTCCGAATTC
JMFF022H15+                                            CTTCCACATAGACTTCAGTCCGAATTC
JMFF027N08+           GTTCAAAATGTTTCTTATTGTGCCATTGGGACTCTTCCACATAGACTTCAGTCCGAATTC
JMSF048F16+           GTTCAAAATGTTTCTTATTGTGCCATTGGGACTCTTCCACATAGACTTCAGTCCGAATTC
                      ____________________________________________________________
consensus             GTTCAAAATGTTTCTTATTGTGCCATTGGGACTCTTCCACATAGACTTCAGTCCGAATTC
 
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JMSF036A20+           CTTGACTCTGGTCTCATCTGGAGTAATTGTAGCACATTTAATAGCAACATTATACTTAAG
JMSF044L16+           CTTGACTCTGGTCTCATCTGGAGTAATTGTAGCACATTTAATAGCAACATTATACTTAAG
JMFF049P20+           CTTGACTCTGGTCTCATCTGGAGTAATTGTAGCACATTTAATAGCAACATTATACTTAAG
JMFF020C20+           CTTGACTCTGGTCTCATCTGGAGTAATTGTAGCACATTTAATAGCAACATTATACTTAAG
JMFF046C12+           CTTGACTCTGGTCTCATCTGGAGTAATTGTAGCACATTTAATAGCAACATTATACTTAAG
JMFF022H15+           CTTGACTCTGGTCTCATCTGGAGTAATTGTAGCACATTTAATAGCAACATTATACTTAAG
JMFF027N08+           CTTGACTCTGGTCTCATCTGGAGTAATTGTAGCACATTTAATAGCAACATTATACTTAAG
JMSF048F16+           CTTGACTCTGGTCTCATCTGGAGTAATTGTAGCACATTTAATAGCAACATTATACTTAAG
                      ____________________________________________________________
consensus             CTTGACTCTGGTCTCATCTGGAGTAATTGTAGCACATTTAATAGCAACATTATACTTAAG
 
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JMSF036A20+           AGTAGCTTCAGCACTTTCTATAGTGACTTTGTCATCAGTGGCATCACGGTTCAGTATTCC
JMSF044L16+           AGTAGCTTCAGCACTTTCTATAGTGACTTTGTCATCAGTGGCATCACGGTTCAGTATTCC
JMFF049P20+           AGTAGCTTCAGCACTTTCTATAGTGACTTTGTCATCAGTGGCATCACGGTTCAGTATTCC
JMFF020C20+           AGTAGCTTCAGCACTTTCTATAGTGACTTTGTCATCAGTGGCATCACGGTTCAGTATTCC
JMFF046C12+           AGTAGCTTCAGCACTTTCTATAGTGACTTTGTCATCAGTGGCATCACGGTTCAGTATTCC
JMFF022H15+           AGTAGCTTCAGCACTTTCTATAGTGACTTTGTCATCAGTGGCATCACGGTTCAGTATTCC
JMFF027N08+           AGTAGCTTCAGCACTTTCTATAGTGACTTTGTCATCAGTGGCATCACGGTTCAGTATTCC
JMSF048F16+           AGTAGCTTCAGCACTTTCTATAGTGACTTTGTCATCAGTGGCATCACGGTTCAGTATTCC
                      ____________________________________________________________
consensus             AGTAGCTTCAGCACTTTCTATAGTGACTTTGTCATCAGTGGCATCACGGTTCAGTATTCC
 
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JMSF036A20+           CAAATCATAATACTTTATATCTAATTCTAGATGGGGAAATATCAGCTTTTCTTTAATCAT
JMSF044L16+           CAAATCATAATACTTTATATCTAATTCTAGATGGGGAAATATCAGCTTTTCTTTAATCAT
JMFF049P20+           CAAATCATAATACTTTATATCTAATTCTAGATGGGGAAATATCAGCTTTTCTTTAATCAT
JMFF020C20+           CAAATCATAATACTTTATATCTAATTCTAGATGGGGAAATATCAGCTTTTCTTTAATCAT
JMFF046C12+           CAAATCATAATACTTTATATCTAATTCTAGATGGGGAAATATCAGCTTTTCTTTAATCAT
JMFF022H15+           CAAATCATAATACTTTATATCTAATTCTAGATGGGGAAATATCAGCTTTTCTTTAATCAT
JMFF027N08+           CAAATCATAATACTTTATATCTAATTCTAGATGGGGAAATATCAGCTTTTCTTTAATCAT
JMSF048F16+           CAAATCATAATACTTTATATCTAATTCTAGATGGGGAAATATCAGCTTTTCTTTAATCAT
                      ____________________________________________________________
consensus             CAAATCATAATACTTTATATCTAATTCTAGATGGGGAAATATCAGCTTTTCTTTAATCAT
 
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JMSF036A20+           CGTCCATATTACTCTCGTCATTTCATCACCGTCCATTTCAACGATAGGATTTTGAACTCT
JMSF044L16+           CGTCCATATTACTCTCGTCATTTCATCACCGTCCATTTCAACGATAGGATTTTGAACTCT
JMFF049P20+           CGTCCATATTACTCTCGTCATTTCATCACCGTCCATTTCAACGATAGGATTTTGAACTCT
JMFF020C20+           CGTCCATATTACTCTCGTCATTTCATCACCGTCCATTTCAACGATAGGATTTTGAACTCT
JMFF046C12+           CGTCCATATTACTCTCGTCATTTCATCACCGTCCATTTCAACGATAGGATTTTGAACTCT
JMFF022H15+           CGTCCATATTACTCTCGTCATTTCATCACCGTCCATTTCAACGATAGGATTTTGAACTCT
JMFF027N08+           CGTCCATATTACTCTCGTCATTTCATCACCGTCCATTTCAACGATAGGATTTTGAACTCT
JMSF048F16+           CGTCCATATTACTCTCGTCATTTCATCACCGTCCATTTCAACGATAGGATTTTGAACTCT
                      ____________________________________________________________
consensus             CGTCCATATTACTCTCGTCATTTCATCACCGTCCATTTCAACGATAGGATTTTGAACTCT
 
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JMSF036A20+           AATTTTATCCTTGGTTTCAACTGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
JMSF044L16+           AATTTTATCCTTGGTTTCAACTGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
JMFF049P20+           AATTTTATCCTTGGTTTCAACTGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
JMFF020C20+           AATTTTATCCTTGGTTTCAACTGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
JMFF046C12+           AATTTTATCCTTGGTTTCAACTGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
JMFF022H15+           AATTTTATCCTTGGTTTCAACTGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
JMSF010P12+                                TGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
JMFF027N08+           AATTTTATCCTTGGTTTCAACTGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
JMSF048F16+           AATTTTATCCTTGGTTTCAACTGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
                      ____________________________________________________________
consensus             AATTTTATCCTTGGTTTCAACTGGAGCGGTACCAGAGGCTGTGGAAGCGAAGCAGCGAAT
 
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JMSF036A20+           GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
JMSF044L16+           GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
JMFF049P20+           GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
JMFF020C20+           GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
JMFF046C12+           GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
JMFF022H15+           GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
JMSF010P12+           GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
JMFF027N08+           GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
JMSF048F16+           GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
                      ____________________________________________________________
consensus             GCTAGCATTTGGTAGGCGTGTCGGGGAAGAGAGACGATTCCTGAAGAACACTTCCTTGAA
 
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JMSF036A20+           CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
JMSF044L16+           CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
JMFF049P20+           CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
JMFF020C20+           CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
JMFF046C12+           CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
JMFF022H15+           CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
JMSF010P12+           CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
JMFF027N08+           CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
JMSF048F16+           CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
                      ____________________________________________________________
consensus             CAGCTTCGGACTAGAAGTGATTGCCAACCTAGGGCTTTTCCGAGCTAGAGAAGACGAAGA
 
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JMSF036A20+           TGACGACAGAACAGAGCTAGCTCGGGCCATGGCGCGTCGTAAAGCGATCATAATACT   
JMSF044L16+           TGACGACAGAACAGAGCTAGCTCGGGCCATGGCGCGTCGTAAAGCGATCATAATACTAT 
JMFF049P20+           TGACGACAGAACAGAGCTAGCTCGGGCCATGGCGCGTCGTAAAGCGATCATAATACTAT 
JMFF020C20+           TGACGACAGAACAGAGCTAGCTCGGGCCATGGCGCGTCGTAAAGCGATCATAATACTAT 
JMFF046C12+           TGACGACAGAACAGAGCTAGCTCGGACCAT                              
JMFF022H15+           TGACGACAGAACAGAGCTAGCTCGGGCCATGGCGCGTCGTAAAGCGATCATAATACTAT 
JMSF010P12+           TGACGACAGAACAGAGCTAGCTCGGGCCATGGCGCGTCGTAAAGCGATCATAATACTA  
JMFF027N08+           TGACGACAGAACAGAGCTAGCTCGGGCCATGGCGCGTCGTAAAGCGATCATAATACTAT 
JMSF048F16+           TGACGACAGAACAGAGCTAGCTCGGGCCATGGCGCGTCGTAAAGCGATCATAATACTATC
                      ____________________________________________________________
consensus             TGACGACAGAACAGAGCTAGCTCGGGCCATGGCGCGTCGTAAAGCGATCATAATACTATC