| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001M14 | Sequence | 562 | 002445 (16) | emb|CAD58628.1| | 5e-73 | SUI1 protein [Coffea arabica] | 617 | 002445 (16) | emb|CAD58628.1| | 9e-73 | SUI1 protein [Coffea arabica] |
| JMFF015A23 | Sequence | 534 | 002445 (16) | emb|CAD58628.1| | 2e-73 | SUI1 protein [Coffea arabica] | 700 | 002445 (16) | emb|CAD58628.1| | 1e-72 | SUI1 protein [Coffea arabica] |
| JMFF034P22 | Sequence | 501 | 002445 (16) | emb|CAD58628.1| | 1e-68 | SUI1 protein [Coffea arabica] | |||||
| JMFN001A05 | Sequence | 626 | 002445 (16) | emb|CAD58628.1| | 7e-73 | SUI1 protein [Coffea arabica] | |||||
| JMFN002E12 | Sequence | 576 | 002445 (16) | emb|CAD58628.1| | 3e-71 | SUI1 protein [Coffea arabica] | |||||
| JMFN008F18 | Sequence | 625 | 002445 (16) | emb|CAD58628.1| | 3e-71 | SUI1 protein [Coffea arabica] | |||||
| JMFN015I13 | Sequence | 627 | 002445 (16) | emb|CAD58628.1| | 1e-72 | SUI1 protein [Coffea arabica] | |||||
| JMFN017I14 | Sequence | 627 | 002445 (16) | emb|CAD58628.1| | 9e-73 | SUI1 protein [Coffea arabica] | |||||
| JMFN030B01 | Sequence | 616 | 002445 (16) | emb|CAD58628.1| | 7e-73 | SUI1 protein [Coffea arabica] | |||||
| JMFN030I06 | Sequence | 512 | 002445 (16) | ref|XP_007021023.1| | 4e-24 | Translation initiation factor SUI1 family protein, putative [Theobroma cacao] g | |||||
| JMFN034B22 | Sequence | 638 | 002445 (16) | emb|CAD58628.1| | 1e-72 | SUI1 protein [Coffea arabica] | |||||
| JMFN039I08 | Sequence | 625 | 002445 (16) | emb|CAD58628.1| | 1e-72 | SUI1 protein [Coffea arabica] | |||||
| JMSF047M23 | Sequence | 685 | 002445 (16) | emb|CAD58628.1| | 2e-72 | SUI1 protein [Coffea arabica] | 637 | 002445 (16) | emb|CAD58628.1| | 1e-72 | SUI1 protein [Coffea arabica] |
This contig is upended
. : . : . : . : . : . :
JMFN002E12- TGACAAAGTTGTCATT
rJMFF015A23- AAGTTGTCATT
JMFN015I13+ TGAGAACCACTTGACAAAGTGGTCATT
rJMFF001M14- AAGTTGTCATT
JMFN008F18+ TGACAAAGTTGTCATT
____________________________________________________________
consensus TGAGAACCACTTGACAAAGTTGTCATT
. : . : . : . : . : . :
JMFN002E12- ATTCAGAAAATGAAGTACATCATCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
rJMFF015A23- ATTCAGAAAATGAAGTACATCATCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
JMFN015I13+ ATTCAGAAAATGAAGTACATCATCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
rJMFF001M14- ATTCAGAAAATGAAGTACATCATCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
JMFN008F18+ ATTCAGAAAATGAAGTACATCATCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
JMFN039I08+ ATCATCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
JMFN030B01+ TCCCATAACAATT-GTGCATAACACAAGCAAAT
JMFN017I14+ ACATCATCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
JMFN034B22+ TGAAGTACATCATCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
JMFN001A05+ TCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
rJMSF047M23- ATCATCATGTCCCATAACAATTGGTGCATAACACAAGCAAAT
____________________________________________________________
consensus ATTCAGAAAATGAAGTACATCATCATGTCCCATAACAATT-GTGCATAACACAAGCAAAT
. : . : . : . : . : . :
JMFN002E12- TGTAACCGGCAACTGGAAACAAAAGATAAATAATTAGGCAACTGGCAGAATACAAGCAGC
rJMFF015A23- CGTAACCGGCAACTGGAAACAAAAGATAAGATAATAGGCAACTGGCAGAATACAAGCGGC
JMFN015I13+ TGTAACCGGCAACTGGAAACAAAAGATAAATAATTAGGCAACTGGCAGAATACAAGCGGC
rJMFF001M14- CGTAACCGGCAACTGGAAACAAAAGATAAGATAATAGGCAACTGGCAGAATACAAGCGGC
JMFN008F18+ TGTAACCGGCAACTGGAAACAAAAGATAAATAATTAGGCAACTGGCAGAATACAAGCAGC
JMFN030I06+ AAATAATTAGGCATCTGGCAGAATACAAGCAGC
JMFN039I08+ TGTAACCGGCAACTGGAAACAAAAGATAAATAATTAGGCAACTGGCAGAATACAAGCAGC
JMFN030B01+ CGTAACCGGCAACTGGAAACAAAAGATAAGATAATAGGCAACTGGCAGAATACAAGCGGC
JMFN017I14+ CGTAACCGGCAACTGGAAACAAAAGATAAGATAATAGGCAACTGGCAGAATACAAGCGGC
JMFN034B22+ TGTAACCGGCAACTGGAAACAAAAGATAAATAATTAGGCAACTGGCAGAATACAAGCAGC
JMFF001M14+ AAAAGATAAGATAATAGGCAACTGGCAGAATACAAGCGGC
JMFN001A05+ CGTAACCGGCAACTGGAAACAAAAGATAAGATAATAGGCAACTGGCAGAATACAAGCGGC
rJMSF047M23- TGTAACCGGCAACTGGAAACAAAAGATAAATAATTAGGCAACTGGCAGAATACAAGCAGC
____________________________________________________________
consensus TGTAACCGGCAACTGGAAACAAAAGATAAATAATTAGGCAACTGGCAGAATACAAGCGGC
. : . : . : . : . : . :
JMFN002E12- AATGGATGTGCTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCCTTCTT
rJMFF015A23- AATGGATGTACTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCTTTCTT
JMFN015I13+ AATGGATGTACTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCTTTCTT
rJMFF001M14- AATGGATGTACTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCTTTCTT
JMFN008F18+ AATGGATGTGCTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCCTTCTT
JMFN030I06+ AATGGATGTGGTAATTGTCCGAGCAGATCAGAATCCATGGATTCTGAGGTGTTCCTTGTT
JMFN039I08+ AATGGATGTGCTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCCTTCTT
JMFN030B01+ AATGGATGTACTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCTTTCTT
JMFF015A23+ TCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCTTTCTT
JMFF034P22+ ATGTGTTCTTTCTT
JMFN017I14+ AATGGATGTACTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCTTTCTT
JMFN034B22+ AATGGATGTGCTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCCTTCTT
JMFF001M14+ AATGGATGTACTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCTTTCTT
JMFN001A05+ AATGGATGTACTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCTTTCTT
rJMSF047M23- AATGGATGTGCTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCCTTCTT
JMSF047M23+ CAGATCAGAAACCATGGATTTTGATGTGTTCCTTCTT
____________________________________________________________
consensus AATGGATGTACTAATTGTCCGAGCAGATCAGAAACCATGGATTTTGATGTGTTCTTTCTT
. : . : . : . : . : . :
JMFN002E12- C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
rJMFF015A23- C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFN015I13+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
rJMFF001M14- C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFN008F18+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFN030I06+ CTACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGGTGATCACCTTGAAGCT
JMFN039I08+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFN030B01+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFF015A23+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFF034P22+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFN017I14+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFN034B22+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFF001M14+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMFN001A05+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
rJMSF047M23- C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
JMSF047M23+ C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
____________________________________________________________
consensus C-ACAATTCCAGCCTGGACGAGGAAAGTAGATACATTCTTCCGCTGATCACCTTGAAGCT
. : . : . : . : . : . :
JMFN002E12- GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
rJMFF015A23- GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFN015I13+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
rJMFF001M14- GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFN008F18+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFN030I06+ GAATAACCTGGCCCAATTCTGGATCCTGAACAACAGTTACGGGAGCAGCAAAATTGTTTG
JMFN039I08+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFN030B01+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFF015A23+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFF034P22+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFN017I14+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFN034B22+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFF001M14+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMFN001A05+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
rJMSF047M23- GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
JMSF047M23+ GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
____________________________________________________________
consensus GAATAACCTGGCCCAATTCCGGATCCTGAACAACAG-TACCGTTGCAGCAAAATTCTTTC
. : . : . : . : . : . :
JMFN002E12- TTGAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
rJMFF015A23- TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMFN015I13+ TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
rJMFF001M14- TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMFN008F18+ TTGAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGAAAT
JMFN030I06+ GAGAGGTCCTTCAATATTTGGTAGTAGCTGAAATATTTCTTGAAGCCCATGCACAGTTGT
JMFN039I08+ TTGAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMFN030B01+ TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMFF015A23+ TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMFF034P22+ TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMFN017I14+ TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMFN034B22+ TTGAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMFF001M14+ TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMFN001A05+ TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
rJMSF047M23- TTGAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
JMSF047M23+ TTGAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
____________________________________________________________
consensus TTAAGGTCCTTCAATATTTTGTTGTAGCTGAAATCTTTCTTCAACCCC-TGCACAGTTGT
. : . : . : . : . : . :
JMFN002E12- CAAGCT-CTTCCTACCATTTCGCTGCTAAACACGAATGTGTACATAATCTTTTGACCCAT
rJMFF015A23- CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
JMFN015I13+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
rJMFF001M14- CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
JMFN008F18+ TAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGTACATAATCTTTTGACCCAT
JMFN030I06+ CAAGCTGGTTCGTACCATTTCGTTGTTGAACACGTATGTGTACATAATCTTCTGAGCCAT
JMFN039I08+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGTACATAATCTTTTGACCCAT
JMFN030B01+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
JMFF015A23+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
JMFF034P22+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
JMFN017I14+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
JMFN034B22+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGTACATAATCTTTTGACCCAT
JMFF001M14+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
JMFN001A05+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
rJMSF047M23- CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGTACATAATCTTTTGACCCAT
JMSF047M23+ CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGTACATAATCTTTTGACCCAT
____________________________________________________________
consensus CAAGCT-CTTCCTACCATTTCGCTGCTGAACACGAATGTGCACATAATCTTTTGACCCAT
. : . : . : . : . : . :
JMFN002E12- CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCAGGAGTCTGTAGG
rJMFF015A23- CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
JMFN015I13+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
rJMFF001M14- CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
JMFN008F18+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCAGGAGTCTGTAGG
JMFN030I06+ CTCCAGATCTTTCAGACATTTGCGTCAGCAAAGGGATCAAAAGCAGCAGGAGTCTGTAGG
JMFN039I08+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCAGGAGTCTGTAGG
JMFN030B01+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
JMFF015A23+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
JMFF034P22+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
JMFN017I14+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
JMFN034B22+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCAGGAGTCTGTAGG
JMFF001M14+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
JMFN001A05+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
rJMSF047M23- CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCAGGAGTCTGTAGG
JMSF047M23+ CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCAGGAGTCTGTAGG
____________________________________________________________
consensus CACCAGAACTTTCAG-CATTTGCCTCAGCAAAGGGATCAAAAGCAGCGGGAGTCTGGAGG
. : . : . : . : . : . :
JMFN002E12- TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGAACAAATAAACCTCT
rJMFF015A23- TCGA
JMFN015I13+ TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGGACAAATAAACCTCC
rJMFF001M14- TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGGAC----AAACCTCC
JMFN008F18+ TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGAACAAATAAACCTCT
JMFN030I06+ TAGAATTCTGACATGAACCTTGGTTGACAATTGAAAGGTCGCACGAACAAATAAACCTCT
JMFN039I08+ TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGAACAAATAAACCTCT
JMFN030B01+ TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGGACAAATAAACCTCC
JMFF015A23+ TCGA
JMFF034P22+ TCGA
JMFN017I14+ TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGGACAAATAAACCTCC
JMFN034B22+ TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGAACAAATAAACCTCT
JMFF001M14+ TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGGAC----AAACCTCC
JMFN001A05+ TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGGACAAATAAACCTCC
rJMSF047M23- TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGAACAAATAAACCTCT
JMSF047M23+ TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGAACAAATAAACCTCT
____________________________________________________________
consensus TCGAATTCAGACATGAACCTTGGTTGACAATTGAAAGACCGCACGAACAAATAAACCTCT
. : . : . : . : . : . :
JMFN002E12- TGTGCAAAATTTGGATGCTC
JMFN015I13+ TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGATAGATGGAGGTC
rJMFF001M14- TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGATAGATGGAGGTC
JMFN008F18+ TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGAGAGATGGAGGTC
JMFN030I06+ TGTGGAACATTTGGATGCTCA
JMFN039I08+ TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGAGAGATGGAGGTC
JMFN030B01+ TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGATAGATGGAGGTC
JMFN017I14+ TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGATAGATGGAGGTC
JMFN034B22+ TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGAGAGATGGAGGTC
JMFF001M14+ TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGATAGATGGAGGTC
JMFN001A05+ TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGATAGATGGAGGTC
rJMSF047M23- TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGAGAGATGGAGGTC
JMSF047M23+ TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGAGAGATGGAGGTC
____________________________________________________________
consensus TGTGCAAAATTTGGATGCTCAGACCTGATCCGAAGGTTAGGGTCTCGATAGATGGAGGTC
. : . : . : . : . : . :
JMFN015I13+ GGTGAA
rJMFF001M14- GGTGAAGAAA
JMFN008F18+ GGTGAAGAAAA
JMFN039I08+ GGTGAAGAAAACAGACCCCAAATCCGGATAAAGCCCGAAGCAGAAAGTA
JMFN030B01+ GGTGAAGAAAGCAGACCCCAAATCCGGATAAAGCCCGAAGCAGAAAGTA
JMFN017I14+ GGTGAAGAAAGCAGACCCCAAATCCGGATAAAGCCCGAAGCAGAAAGTA
JMFN034B22+ GGTGAAGAAAACAGACCCCAAATCCGGATAAAGCCCGAAGCAGAAAGTAG
JMFF001M14+ GGTGAAGAAAGCAGACCCCAAATCCGGATAAAGCCCGAAGCAGAAAGTAGT
JMFN001A05+ GGTGAAGAAAGCAGACCCCAAATCCGGATAAAGCCCGAAGCAGAAAGTAGTGAA
rJMSF047M23- GGTGAAGAAAACAGACCCCAAATCCGGATAAAGCCCGAAGCAGAAAGTAGCGAATGCAC
JMSF047M23+ GGTGAAGAAAACAGACCCCAAATCCGGATAAAGCCCGAAGCAGAAAGTAGCGAATGCACC
____________________________________________________________
consensus GGTGAAGAAAACAGACCCCAAATCCGGATAAAGCCCGAAGCAGAAAGTAGCGAATGCACC