Contig 002442:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043L12Sequence614002442 (2)ref|XP_009415499.1|1e-16PREDICTED: TOX high mobility group box family member 4-A-like isoform X2 [Musa 535002676 (2)
JMSF047I10Sequence694002442 (2)ref|XP_004502456.1|4e-17PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Ci763002676 (2)ref|XP_009603929.1|3e-12PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like iso

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+                          TCATTTCCTTTCCGTNTGCTGTTCTGTTCAGCTTTACTCCGGTGG
JMSF047I10+                                                 CTGTTCAGCTTTACTCCGGTGG
                      ____________________________________________________________
consensus                            TCATTTCCTTTCCGTNTGCTGTTCTGTTCAGCTTTACTCCGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           AAAATGCACCAATGGGACAGTGTTTCAATGCACTGTTGAGTGCTGTTGAGCTTGGAGAGC
JMSF047I10+           AAAATGCACCAATGGGACAGTGTTTCAATGCACTGTTGAGTGCTGTTGAGCTTGGAGAGC
                      ____________________________________________________________
consensus             AAAATGCACCAATGGGACAGTGTTTCAATGCACTGTTGAGTGCTGTTGAGCTTGGAGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           TTGTCAGCAAGTATCTCTTCGTTGAAAGCACTATTCATCCCCACCCACACGCCGCCACCA
JMSF047I10+           TTGTCAGCAAGTATCTCTTCGTTGAAAGCACTATTCATCCCCACCCACACGCCGCCACCA
                      ____________________________________________________________
consensus             TTGTCAGCAAGTATCTCTTCGTTGAAAGCACTATTCATCCCCACCCACACGCCGCCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           CCCTACATATATTCGTGAACAGACTCCAAATTCGAAAATCAAAGAAATACGGAAAGAACC
JMSF047I10+           CCCTACATATATTCGTGAACAGACTCCAAATTCGAAAATCAAAGAAATACGGAAAGAACC
                      ____________________________________________________________
consensus             CCCTACATATATTCGTGAACAGACTCCAAATTCGAAAATCAAAGAAATACGGAAAGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           CCAAATTCTAAGGAAAATCTGATAAAGTTTGAATCTTTAAGCCAATAACTCAAAAGGGTT
JMSF047I10+           CCAAATTCTAAGGAAAATCTGATAAAGTTTGAATCTTTAAGCCAATAACTCAAAAGGGTT
                      ____________________________________________________________
consensus             CCAAATTCTAAGGAAAATCTGATAAAGTTTGAATCTTTAAGCCAATAACTCAAAAGGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           TCTTATAAATGACCCAATTGAGCAAATGCAGAGAGCAGACTCATACAAATTACGCAAAAA
JMSF047I10+           TCTTATAAATGACCCAATTGAGCAAATGCAGAGAGCAGACTCATACAAATTACGCAAAAA
                      ____________________________________________________________
consensus             TCTTATAAATGACCCAATTGAGCAAATGCAGAGAGCAGACTCATACAAATTACGCAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           TTGGAAATTTGCATCTGAGCAGTGAAGGAGAAAAAAAACCTAGCAATGCTAAACGGCTAA
JMSF047I10+           TTGGAAATTTGCATCTGAGCAGTGAAGGAGAAAAAAAACCTAGCAATGCTAAACGGCTAA
                      ____________________________________________________________
consensus             TTGGAAATTTGCATCTGAGCAGTGAAGGAGAAAAAAAACCTAGCAATGCTAAACGGCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           CAAAGCCTCGATTCAGACCAACGACAAATCGAGCTGGCGAATCTCTGAATAAATAGCTTC
JMSF047I10+           CAAAGCCTCGATTCAGACCAACGACAAATCGAGCTGGCGAATCTCTGAATAAATAGCTTC
                      ____________________________________________________________
consensus             CAAAGCCTCGATTCAGACCAACGACAAATCGAGCTGGCGAATCTCTGAATAAATAGCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           CAAGAGTGAGAGTTTGGAAGGGTTTTGATCAGCTGCGACGCACACTGGGAAGACGAGATT
JMSF047I10+           CAAGAGTGAGAGTTTGGAAGGGTTTTGATCAGCTGCGACGCACACTGGGAAGACGAGATT
                      ____________________________________________________________
consensus             CAAGAGTGAGAGTTTGGAAGGGTTTTGATCAGCTGCGACGCACACTGGGAAGACGAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           GAATGAATCCAGAAAAAAACGTTTGTTTGCAGTGTCTTATGAGGGTTTTGAAGGTTTGGG
JMSF047I10+           GAATGAATCCAGAAAAAAACGTTTGTTTGCAGTGTCTTATGAGGGTTTTGAAGGTTTGGG
                      ____________________________________________________________
consensus             GAATGAATCCAGAAAAAAACGTTTGTTTGCAGTGTCTTATGAGGGTTTTGAAGGTTTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF043L12+           AATGGCGGGCGGGGCACATAAGAAACGTA                               
JMSF047I10+           AATGGCGGGCGGGGCACATAAGAAACGTAAGACGAGAAGAGGAGGGAAGAGCGCAGAGAG
                      ____________________________________________________________
consensus             AATGGCGGGCGGGGCACATAAGAAACGTAAGACGAGAAGAGGAGGGAAGAGCGCAGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047I10+           GCAGATTCTTGTTTCTCTGTACTTTGGGCTGTTTTTCCGGGTTTTCTTTTGTTTCTTTTC
                      ____________________________________________________________
consensus             GCAGATTCTTGTTTCTCTGTACTTTGGGCTGTTTTTCCGGGTTTTCTTTTGTTTCTTTTC