Contig 002442:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043L12Sequence614002442 (2)ref|XP_009415499.1|1e-16PREDICTED: TOX high mobility group box family member 4-A-like isoform X2 [Musa 535002676 (2)
JMSF047I10Sequence694002442 (2)ref|XP_004502456.1|4e-17PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Ci763002676 (2)ref|XP_009603929.1|3e-12PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like iso

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF043L12+ TCATTTCCTTTCCGTNTGCTGTTCTGTTCAGCTTTACTCCGGTGG
JMSF047I10+ CTGTTCAGCTTTACTCCGGTGG
                      ____________________________________________________________
consensus TCATTTCCTTTCCGTNTGCTGTTCTGTTCAGCTTTACTCCGGTGG
 
. : . : . : . : . : . :
JMFF043L12+ AAAATGCACCAATGGGACAGTGTTTCAATGCACTGTTGAGTGCTGTTGAGCTTGGAGAGC
JMSF047I10+ AAAATGCACCAATGGGACAGTGTTTCAATGCACTGTTGAGTGCTGTTGAGCTTGGAGAGC
                      ____________________________________________________________
consensus AAAATGCACCAATGGGACAGTGTTTCAATGCACTGTTGAGTGCTGTTGAGCTTGGAGAGC
 
. : . : . : . : . : . :
JMFF043L12+ TTGTCAGCAAGTATCTCTTCGTTGAAAGCACTATTCATCCCCACCCACACGCCGCCACCA
JMSF047I10+ TTGTCAGCAAGTATCTCTTCGTTGAAAGCACTATTCATCCCCACCCACACGCCGCCACCA
                      ____________________________________________________________
consensus TTGTCAGCAAGTATCTCTTCGTTGAAAGCACTATTCATCCCCACCCACACGCCGCCACCA
 
. : . : . : . : . : . :
JMFF043L12+ CCCTACATATATTCGTGAACAGACTCCAAATTCGAAAATCAAAGAAATACGGAAAGAACC
JMSF047I10+ CCCTACATATATTCGTGAACAGACTCCAAATTCGAAAATCAAAGAAATACGGAAAGAACC
                      ____________________________________________________________
consensus CCCTACATATATTCGTGAACAGACTCCAAATTCGAAAATCAAAGAAATACGGAAAGAACC
 
. : . : . : . : . : . :
JMFF043L12+ CCAAATTCTAAGGAAAATCTGATAAAGTTTGAATCTTTAAGCCAATAACTCAAAAGGGTT
JMSF047I10+ CCAAATTCTAAGGAAAATCTGATAAAGTTTGAATCTTTAAGCCAATAACTCAAAAGGGTT
                      ____________________________________________________________
consensus CCAAATTCTAAGGAAAATCTGATAAAGTTTGAATCTTTAAGCCAATAACTCAAAAGGGTT
 
. : . : . : . : . : . :
JMFF043L12+ TCTTATAAATGACCCAATTGAGCAAATGCAGAGAGCAGACTCATACAAATTACGCAAAAA
JMSF047I10+ TCTTATAAATGACCCAATTGAGCAAATGCAGAGAGCAGACTCATACAAATTACGCAAAAA
                      ____________________________________________________________
consensus TCTTATAAATGACCCAATTGAGCAAATGCAGAGAGCAGACTCATACAAATTACGCAAAAA
 
. : . : . : . : . : . :
JMFF043L12+ TTGGAAATTTGCATCTGAGCAGTGAAGGAGAAAAAAAACCTAGCAATGCTAAACGGCTAA
JMSF047I10+ TTGGAAATTTGCATCTGAGCAGTGAAGGAGAAAAAAAACCTAGCAATGCTAAACGGCTAA
                      ____________________________________________________________
consensus TTGGAAATTTGCATCTGAGCAGTGAAGGAGAAAAAAAACCTAGCAATGCTAAACGGCTAA
 
. : . : . : . : . : . :
JMFF043L12+ CAAAGCCTCGATTCAGACCAACGACAAATCGAGCTGGCGAATCTCTGAATAAATAGCTTC
JMSF047I10+ CAAAGCCTCGATTCAGACCAACGACAAATCGAGCTGGCGAATCTCTGAATAAATAGCTTC
                      ____________________________________________________________
consensus CAAAGCCTCGATTCAGACCAACGACAAATCGAGCTGGCGAATCTCTGAATAAATAGCTTC
 
. : . : . : . : . : . :
JMFF043L12+ CAAGAGTGAGAGTTTGGAAGGGTTTTGATCAGCTGCGACGCACACTGGGAAGACGAGATT
JMSF047I10+ CAAGAGTGAGAGTTTGGAAGGGTTTTGATCAGCTGCGACGCACACTGGGAAGACGAGATT
                      ____________________________________________________________
consensus CAAGAGTGAGAGTTTGGAAGGGTTTTGATCAGCTGCGACGCACACTGGGAAGACGAGATT
 
. : . : . : . : . : . :
JMFF043L12+ GAATGAATCCAGAAAAAAACGTTTGTTTGCAGTGTCTTATGAGGGTTTTGAAGGTTTGGG
JMSF047I10+ GAATGAATCCAGAAAAAAACGTTTGTTTGCAGTGTCTTATGAGGGTTTTGAAGGTTTGGG
                      ____________________________________________________________
consensus GAATGAATCCAGAAAAAAACGTTTGTTTGCAGTGTCTTATGAGGGTTTTGAAGGTTTGGG
 
. : . : . : . : . : . :
JMFF043L12+ AATGGCGGGCGGGGCACATAAGAAACGTA
JMSF047I10+ AATGGCGGGCGGGGCACATAAGAAACGTAAGACGAGAAGAGGAGGGAAGAGCGCAGAGAG
                      ____________________________________________________________
consensus AATGGCGGGCGGGGCACATAAGAAACGTAAGACGAGAAGAGGAGGGAAGAGCGCAGAGAG
 
. : . : . : . : . : . :
JMSF047I10+ GCAGATTCTTGTTTCTCTGTACTTTGGGCTGTTTTTCCGGGTTTTCTTTTGTTTCTTTTC
                      ____________________________________________________________
consensus GCAGATTCTTGTTTCTCTGTACTTTGGGCTGTTTTTCCGGGTTTTCTTTTGTTTCTTTTC