Contig 002441:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN041E12Sequence216002441 (5)ref|XP_004245886.1|2e-07PREDICTED: ferredoxin [Solanum lycopersicum]
JMSF028D09Sequence659002441 (5)ref|XP_004245886.1|3e-85PREDICTED: ferredoxin [Solanum lycopersicum]719002441 (5)ref|XP_009590860.1|6e-80PREDICTED: ferredoxin isoform X1 [Nicotiana tomentosiformis]
JMSF047G15Sequence710002441 (5)ref|XP_004245886.1|8e-86PREDICTED: ferredoxin [Solanum lycopersicum]732002441 (5)ref|XP_004245886.1|1e-85PREDICTED: ferredoxin [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF028D09-                                    AGGAGAGAAAACTGTCTCAATGCTTTCACAATAA
                      ____________________________________________________________
consensus                                       AGGAGAGAAAACTGTCTCAATGCTTTCACAATAA
 
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rJMSF028D09-          GATGCACTTGACATGGAAATGGGAAGAAAAACTAAAGCCAAAATGTTAAATGCTTACAAA
rJMSF047G15-                                                                    AA
                      ____________________________________________________________
consensus             GATGCACTTGACATGGAAATGGGAAGAAAAACTAAAGCCAAAATGTTAAATGCTTACAAA
 
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rJMSF028D09-          AATCACCAACACATCAGCATAACATGTGGTGAGAAAATGGAAAGTTAACATACAAATTAA
rJMSF047G15-          AATCACCAACACATCAGCATAACATGTGGTGAGAAAATGGAAAGTTAACATACAAATTAA
JMSF028D09+                                                                      A
JMSF047G15+                     ACATCAGCATAACATGTGGTGAGAAAATGGAAAGTTAACATACAAATTAA
                      ____________________________________________________________
consensus             AATCACCAACACATCAGCATAACATGTGGTGAGAAAATGGAAAGTTAACATACAAATTAA
 
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rJMSF028D09-          GGAAAGAAAATTATACATATTTTGTTGGATTCCATATCATCTCCTCAAATCAACTAAGTG
rJMSF047G15-          GGAAAGAAAATTATACATATTTTGTTGGATTCCATATCATCTCCTCAAATCAACTAAGTG
JMSF028D09+           GGAAAGAAAATTATACATATTTTGTTGGATTCCATATCATCTCCTCAAATCAACTAAGTG
JMSF047G15+           GGAAAGAAAATTATACATATTTTGTTGGATTCCATATCATCTCCTCAAATCAACTAAGTG
                      ____________________________________________________________
consensus             GGAAAGAAAATTATACATATTTTGTTGGATTCCATATCATCTCCTCAAATCAACTAAGTG
 
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rJMSF028D09-          CTGCTTATTCATCCGCCATTGCTAATTCCAGTGCATAATCATCCCTTTCAATAGGTCCTC
rJMSF047G15-          CTGCTTATTCATCCGCCATTGCTAATTCCAGTGCATAATCATCCCTTTCAATAGGTCCTC
JMSF028D09+           CTGCTTATTCATCCGCCATTGCTAATTCCAGTGCATAATCATCCCTTTCAATAGGTCCTC
JMSF047G15+           CTGCTTATTCATCCGCCATTGCTAATTCCAGTGCATAATCATCCCTTTCAATAGGTCCTC
                      ____________________________________________________________
consensus             CTGCTTATTCATCCGCCATTGCTAATTCCAGTGCATAATCATCCCTTTCAATAGGTCCTC
 
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rJMSF028D09-          GGGCAAAATATCTTCCAAATTGGAGCCAATATACCTCATCCTCATCCTGCGTTTCAACTT
rJMSF047G15-          GGGCAAAATATCTTCCAAATTGGAGCCAATATACCTCATCCTCATCCTGCGTTTCAACTT
JMSF028D09+           GGGCAAAATATCTTCCAAATTGGAGCCAATATACCTCATCCTCATCCTGCGTTTCAACTT
JMSF047G15+           GGGCAAAATATCTTCCAAATTGGAGCCAATATACCTCATCCTCATCCTGCGTTTCAACTT
                      ____________________________________________________________
consensus             GGGCAAAATATCTTCCAAATTGGAGCCAATATACCTCATCCTCATCCTGCGTTTCAACTT
 
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rJMSF028D09-          CAAGGTCAGTTGATGGAAAACCCACACACAGAAGAGCATATCCCTTCATTTTCAATTCAT
rJMSF047G15-          CAAGGTCAGTTGATGGAAAACCCACACACAGAAGAGCATATCCCTTCATTTTCAATTCAT
JMSF028D09+           CAAGGTCAGTTGATGGAAAACCCACACACAGAAGAGCATATCCCTTCATTTTCAATTCAT
JMSF047G15+           CAAGGTCAGTTGATGGAAAACCCACACACAGAAGAGCATATCCCTTCATTTTCAATTCAT
                      ____________________________________________________________
consensus             CAAGGTCAGTTGATGGAAAACCCACACACAGAAGAGCATATCCCTTCATTTTCAATTCAT
 
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rJMSF028D09-          TTGAAATCCCTAATGCTTCAGGCTGTCTTATTTGCCCAGATTTTACACGGACGGCACAGC
rJMSF047G15-          TTGAAATCCCTAATGCTTCAGGCTGTCTTATTTGCCCAGATTTTACACGGACGGCACAGC
JMSF028D09+           TTGAAATCCCTAATGCTTCAGGCTGTCTTATTTGCCCAGATTTTACACGGACGGCACAGC
JMSF047G15+           TTGAAATCCCTAATGCTTCAGGCTGTCTTATTTGCCCAGATTTTACACGGACGGCACAGC
                      ____________________________________________________________
consensus             TTGAAATCCCTAATGCTTCAGGCTGTCTTATTTGCCCAGATTTTACACGGACGGCACAGC
 
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rJMSF028D09-          TAGTACAACATCCGTGCCTGCAAGCAAAGGGAAGCCGTATATTCTGATCCTCAGCTGTAT
rJMSF047G15-          TAGTACAACATCCGTGCCTGCAAGCAAAGGGAAGCCGTATATTCTGATCCTCAGCTGTAT
JMSF028D09+           TAGTACAACATCCGTGCCTGCAAGCAAAGGGAAGCCGTATATTCTGATCCTCAGCTGTAT
JMSF047G15+           TAGTACAACATCCGTGCCTGCAAGCAAAGGGAAGCCGTATATTCTGATCCTCAGCTGTAT
                      ____________________________________________________________
consensus             TAGTACAACATCCGTGCCTGCAAGCAAAGGGAAGCCGTATATTCTGATCCTCAGCTGTAT
 
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rJMSF028D09-          GCAAAATGTATTGATCCTCCGGGACGAAGAATTCGTGGACGACGCCGGTTTGACGGTCGT
rJMSF047G15-          GCAAAATGTATTGATCCTCCGGGACGAAGAATTCGTGGACGACGCCGGTTTGACGGTCGT
JMSF028D09+           GCAAAATGTATTGATCCTCCGGGACGAAGAATTCGTGGACGACGCCGGTTTGACGGTCGT
JMSF047G15+           GCAAAATGTATTGATCCTCCGGGACGAAGAATTCGTGGACGACGCCGGTTTGACGGTCGT
                      ____________________________________________________________
consensus             GCAAAATGTATTGATCCTCCGGGACGAAGAATTCGTGGACGACGCCGGTTTGACGGTCGT
 
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rJMSF028D09-          GAACAGTGACTTTGTGAATGGGGACGCTAGAAGGAGGGGAATAGGTGCTACCGTTTTGAG
JMFN041E12+               AGTGACTTTGTGAGTGGGGACGCTAGAAGGAGGGGAATAGGTGCTACCGTTTTGAG
rJMSF047G15-          GAACAGTGACTTTGTGAGTGGGGACGCTAGAAGGAGGGGAATAGGTGCTACCGTTTTGAG
JMSF028D09+           GAACAGTGACTTTGTGAATGGGGACGCTAGAAGGAGGGGAATAGGTGCTACCGTTTTGAG
JMSF047G15+           GAACAGTGACTTTGTGAGTGGGGACGCTAGAAGGAGGGGAATAGGTGCTACCGTTTTGAG
                      ____________________________________________________________
consensus             GAACAGTGACTTTGTGAGTGGGGACGCTAGAAGGAGGGGAATAGGTGCTACCGTTTTGAG
 
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rJMSF028D09-          CGGCGACGGCAGCGGGGGTTCGAAGCTGGGAAGTGGTTTTGCGGGTGCATTTGGCGGAGG
JMFN041E12+           CGGCGACGGCAGCGGGGGTTCGAAGCTGGGAAGTGGTTTTGCGGGTGCATTTGGCGGAGG
rJMSF047G15-          CGGCGACGGCAGCGGGGGTTCGAAGCTGGGAAGTGGTTTTGCGGGTGCATTTGGCGGAGG
JMSF028D09+           CGGCGACGGCAGCGGGGGTTCGAAGCTGGGAAGTGGTTTTGCGGGTGCATTTGGCGGAGG
JMSF047G15+           CGGCGACGGCAGCGGGGGTTCGAAGCTGGGAAGTGGTTTTGCGGGTGCATTTGGCGGAGG
                      ____________________________________________________________
consensus             CGGCGACGGCAGCGGGGGTTCGAAGCTGGGAAGTGGTTTTGCGGGTGCATTTGGCGGAGG
 
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rJMSF028D09-          AGCTTGAAGGGAACTTAACTGAGGA                                   
JMFN041E12+           AGCTTGAAGGGAACTTAACTGAGGACGGCGGCGCGTGAAGCTGGGGTGGGCGGTGGAGCG
rJMSF047G15-          AGCTTGAAGGGAACTTAACTGAGGACGGCGGCGCGTGAAGCTGGGGTGGGCGGTGGAGCG
JMSF028D09+           AGCTTGAAGGGAACTTAACTGAGGACGGCGGCGCGTGAAGCTGGGGTGGGCGGTGGAGCG
JMSF047G15+           AGCTTGAAGGGAACTTAACTGAGGACGGCGGCGCGTGAAGCTGGGGTGGGCGGTGGAGCG
                      ____________________________________________________________
consensus             AGCTTGAAGGGAACTTAACTGAGGACGGCGGCGCGTGAAGCTGGGGTGGGCGGTGGAGCG
 
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JMFN041E12+           AGTAGTAAGCGTTGCAGCAGGGAGCTTGAAGATCCATTCG                    
rJMSF047G15-          AGTAGCAAGCGTTGCAGCAGGGAGCTTGAAGATCCATTCGTCGGTATAGTTTTAGCT   
JMSF028D09+           AGTAGCAAGCGTTGCAGCAGGGAGCTTGAAGATCCATTCGTCGGTATAGTTTTAGCT   
JMSF047G15+           AGTAGCAAGCGTTGCAGCAGGGAGCTTGAAGATCCATTCGTCGGTATAGTTTTAGCTACC
                      ____________________________________________________________
consensus             AGTAGCAAGCGTTGCAGCAGGGAGCTTGAAGATCCATTCGTCGGTATAGTTTTAGCTACC