| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006M18 | Sequence | 367 | 002440 (5) | ref|XP_011098646.1| | 2e-32 | PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X2 [Sesamum i | 795 | 009649 (6) | ref|XP_010257893.1| | 3e-92 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu |
| JMFF012C19 | Sequence | 148 | 002440 (5) | 365 | 009649 (6) | ||||||
| JMSF021D24 | Sequence | 631 | 002440 (5) | ref|XP_008379366.1| | 1e-96 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X4 [Malu | 728 | 009649 (6) | ref|XP_010257893.1| | 7e-64 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu |
| JMSF030L18 | Sequence | 642 | 002440 (5) | ref|XP_008379366.1| | 9e-99 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X4 [Malu | 727 | 009649 (6) | ref|XP_010257893.1| | 7e-64 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu |
| JMSF047F17 | Sequence | 690 | 002440 (5) | ref|XP_006431178.1| | 1e-108 | hypothetical protein CICLE_v10011680mg [Citrus clementina] ref|XP_006431179.1| h | 719 | 009907 (8) | ref|XP_009767064.1| | 2e-69 | PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like [Nicotiana syl |
This contig is upended
. : . : . : . : . : . :
JMSF047F17+ GCAGTAGCTGCAGTCTCAATATCAGTAAAC
____________________________________________________________
consensus GCAGTAGCTGCAGTCTCAATATCAGTAAAC
. : . : . : . : . : . :
JMSF030L18+ CCTGCTGCTTTTTCAAAGGTAGCAATCTTGTGCACAAAACCA
JMSF021D24+ TTCAAAGGTAGCAATCTTGTGCACAAAACCA
JMSF047F17+ TGGACTAAAGCCTGAAATCCTGCTGCTTTTTCAAAGGTAGCAATCTTGTGCACAAAACCA
____________________________________________________________
consensus TGGACTAAAGCCTGAAATCCTGCTGCTTTTTCAAAGGTAGCAATCTTGTGCACAAAACCA
. : . : . : . : . : . :
JMSF030L18+ AAGGCCGAAAATACCAAATGAATGACATCAATGCTGACATCACCAGCTTCAACACCCTCA
JMSF021D24+ AAGGCCGAAAATACCAAATGAATGACATCAATGCTGACATCACCAGCTTCAACACCCTCA
JMSF047F17+ AAGGCCGAAAATACCAAATGAATGACATCAATGCTGACATCACCAGCTTCAACACCCTCA
____________________________________________________________
consensus AAGGCCGAAAATACCAAATGAATGACATCAATGCTGACATCACCAGCTTCAACACCCTCA
. : . : . : . : . : . :
JMSF030L18+ ATAGTTACCAGCAGAACATTCCCTGGAATATCTCCAGGGCTCTTGTTATTGACAATTTCA
JMSF021D24+ ATAGTTACCAGCAGAACATTCCCTGGAATATCTCCAGGGCTCTTGTTATTGACAATTTCA
JMSF047F17+ ATAGTTACCAGCAGAACATTCCCTGGAATATCTCCAGGGCTCTTGTTATTGACAATTTCA
____________________________________________________________
consensus ATAGTTACCAGCAGAACATTCCCTGGAATATCTCCAGGGCTCTTGTTATTGACAATTTCA
. : . : . : . : . : . :
JMSF030L18+ TGCCTGTTCGAATACTGAATATACACAGCTTTGCCACGAATTTGTGCAGGCTCTGAAGAC
JMSF021D24+ TGCCTGTTCGAATACTGAATATACACAGCTTTGCCACGAATTTGTGCAGGCTCTGAAGAC
JMSF047F17+ TGCCTGTTCGAATACTGAATATACACAGCTTTGCCACGAATTTGTGCAGGCTCTGAAGAC
____________________________________________________________
consensus TGCCTGTTCGAATACTGAATATACACAGCTTTGCCACGAATTTGTGCAGGCTCTGAAGAC
. : . : . : . : . : . :
JMSF030L18+ GAAGCATAATAGGTGGCCATATTGATAGCTTGATTAAGATCAGCGAATTCGACAAACGCT
JMSF021D24+ GAAGCATAATAGGTGGCCATATTGATAGCTTGATTAAGATCAGCGAATTCGACAAACGCT
JMFF006M18+ CAAACGCT
JMSF047F17+ GAAGCATAATAGGTGGCCATATTGATAGCTTGATTAAGATCAGCGAATTCGACAAACGCT
____________________________________________________________
consensus GAAGCATAATAGGTGGCCATATTGATAGCTTGATTAAGATCAGCGAATTCGACAAACGCT
. : . : . : . : . : . :
JMSF030L18+ TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
JMSF021D24+ TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
JMFF006M18+ TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
JMSF047F17+ TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
____________________________________________________________
consensus TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
. : . : . : . : . : . :
JMSF030L18+ AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
JMSF021D24+ AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
JMFF006M18+ AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
JMSF047F17+ AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
____________________________________________________________
consensus AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
. : . : . : . : . : . :
JMSF030L18+ GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
JMSF021D24+ GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
JMFF006M18+ GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
JMSF047F17+ GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
____________________________________________________________
consensus GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
. : . : . : . : . : . :
JMSF030L18+ TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
JMSF021D24+ TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
JMFF006M18+ TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
JMFF012C19+ CGAGTCAGGNGACAGGATAACTGAAATCCGC
JMSF047F17+ TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
____________________________________________________________
consensus TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
. : . : . : . : . : . :
JMSF030L18+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
JMSF021D24+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
JMFF006M18+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
JMFF012C19+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
JMSF047F17+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
____________________________________________________________
consensus CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
. : . : . : . : . : . :
JMSF030L18+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTAC
JMSF021D24+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTAC
JMFF006M18+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTAC
JMFF012C19+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATT
JMSF047F17+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTACCC
____________________________________________________________
consensus GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTACCC