| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF049I14 | Sequence | 624 | 002439 (6) | ref|XP_009791843.1| | 1e-80 | PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791 | 618 | 002439 (6) | ref|XP_009618950.1| | 4e-50 | PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis] |
| JMSF003A11 | Sequence | 211 | 002439 (6) | emb|CDP03050.1| | 2e-34 | unnamed protein product [Coffea canephora] | 612 | 002439 (6) | ref|XP_009618950.1| | 4e-74 | PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis] |
| JMSF047D08 | Sequence | 663 | 002439 (6) | ref|XP_009791843.1| | 9e-88 | PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791 | 766 | 002439 (6) | ref|XP_009618950.1| | 4e-94 | PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF049I14- AAAATAAAAATAAATGAAACTAAAATTTTTCTTCACTAATA
____________________________________________________________
consensus AAAATAAAAATAAATGAAACTAAAATTTTTCTTCACTAATA
. : . : . : . : . : . :
rJMFF049I14- TTGTCACAAAACTTGAAACCCAACATTTAAACAATTTGTAATAGTGCATTTCAGGTGCTG
____________________________________________________________
consensus TTGTCACAAAACTTGAAACCCAACATTTAAACAATTTGTAATAGTGCATTTCAGGTGCTG
. : . : . : . : . : . :
rJMFF049I14- TAGTTTCCACCATGCTAGATGGAGCCTTCAAAATCCTGTTTCAGTTATGGACTGAGTCAA
rJMSF003A11- AAATCCTGTTTCAGTTATGGACTGAGTCAA
rJMSF047D08- AAATCCTGTTTCAGTTATGGACTGAGTCAA
____________________________________________________________
consensus TAGTTTCCACCATGCTAGATGGAGCCTTCAAAATCCTGTTTCAGTTATGGACTGAGTCAA
. : . : . : . : . : . :
rJMFF049I14- TTAACCGCAGAAAACACAAATTACAAATTTTTTTTTTCAAGATGGCTATTTCATTCTGCA
rJMSF003A11- TTAACCGCAGAAAACACAAATTACAAATTTTTTTTTTCAAGATGGCTATTTCATTCTGCA
rJMSF047D08- TTAACCGCAGAAAACACAAATTACAAATTTTTTTTTTCAAGATGGCTATTTCATTCTGCA
____________________________________________________________
consensus TTAACCGCAGAAAACACAAATTACAAATTTTTTTTTTCAAGATGGCTATTTCATTCTGCA
. : . : . : . : . : . :
rJMFF049I14- TGAATGAATACCATAAAAGCAAGATTACAGCATTTTCCTCACCCACCCAAAAGCCCCTAA
rJMSF003A11- TGAATGAATACCATAAAAGCAAGATTACAGCATTTTCCTCACCCACCCAAAAGCCCCTAA
rJMSF047D08- TGAATGAATACCATAAAAGCAAGATTACAGCATTTTCCTCACCCACCCAAAAGCCCCTAA
____________________________________________________________
consensus TGAATGAATACCATAAAAGCAAGATTACAGCATTTTCCTCACCCACCCAAAAGCCCCTAA
. : . : . : . : . : . :
rJMFF049I14- GAAAAGTAGTGGTGCATGGAAGCTCGGGAACTAAGAAAGCACCGCGATTACATCAGACAC
rJMSF003A11- NAAAAGTAGNGGTGCATGGAAGCTCGGGAACTAAGAAAGCACCGCGATTACATCAGACAC
rJMSF047D08- NAAAAGTAGNGGTGCATGGAAGCTCGGGAACTAAGAAAGCACCGCGATTACATCAGACAC
____________________________________________________________
consensus GAAAAGTAGTGGTGCATGGAAGCTCGGGAACTAAGAAAGCACCGCGATTACATCAGACAC
. : . : . : . : . : . :
rJMFF049I14- CCTCAAAACAATGTAATCCGAACCATCAACACCTTTAAACTCATTCCCAGCATACTTGGA
rJMSF003A11- CCTCAAAACAATGTAATCCGAACCATCAACACCTTTAAACTCATTCCCAGCATACTTGGA
rJMSF047D08- CCTCAAAACAATGTAATCCGAACCATCAACACCTTTAAACTCATTCCCAGCATACTTGGA
____________________________________________________________
consensus CCTCAAAACAATGTAATCCGAACCATCAACACCTTTAAACTCATTCCCAGCATACTTGGA
. : . : . : . : . : . :
rJMFF049I14- AAAGAGGATAGTGCTTCCCGTAGAAACTGATAAAGATTTCCTGTTCCCTTCTTCATCGAG
rJMSF003A11- AAAGAGGATAGTGCTTCCCGTANAAACTGATAAAGATTTCCTGTTCCCTTCTTCATCGAG
rJMSF047D08- AAAGAGGATAGNGCTTCCCGTAGAAACTGATAAAGATTTCCNGTTCCCTTCTTCATCGAG
____________________________________________________________
consensus AAAGAGGATAGTGCTTCCCGTAGAAACTGATAAAGATTTCCTGTTCCCTTCTTCATCGAG
. : . : . : . : . : . :
rJMFF049I14- AGGACCAGGCCCGACAGCCAGAACCGTGCCAATGGAAGGCTTCTCCTTGCTTGCTGCACT
JMSF003A11+ CACT
rJMSF003A11- AGGACCAGGCCCGACAGCCAGAACCGNGCCAATGGAAGGCTTCTCCTTGCTTGCTGCACT
rJMSF047D08- AGGACCAGGCCCGACAGCCAGAACCGTGCCAATGGAAGGCTTCTCCTTGCTTGCTGCACT
JMSF047D08+ ACT
____________________________________________________________
consensus AGGACCAGGCCCGACAGCCAGAACCGTGCCAATGGAAGGCTTCTCCTTGCTTGCTGCACT
. : . : . : . : . : . :
rJMFF049I14- CAGCAACAAGCCTCCCGAAGTTTTTTCCTCAACTTCAGCAACCTTAATTAGAACTCTGTC
JMSF003A11+ CAGCAACAAGCCTCCCGAAGTTTTTTCCTCAACTTCAGCAACCTTAATTAGAACTCTGTC
rJMSF003A11- CAGCAACAAGCCTCCCGAAGTTTTTTCCTCAACTTCAGCAACCTTAATTAGAACTCTGTC
rJMSF047D08- CAGCAACAAGCCTCCCGAAGTTTTTTCCTCAACTTCAGCAACCTTAATTAGAACTCTGTC
JMFF049I14+ ACTTCAGCAACCTTAATTAGAACTCTGTC
JMSF047D08+ CAGCAACAAGCCTCCCGAAGTTTTTTCCTCAACTTCAGCAACCTTAATTAGAACTCTGTC
____________________________________________________________
consensus CAGCAACAAGCCTCCCGAAGTTTTTTCCTCAACTTCAGCAACCTTAATTAGAACTCTGTC
. : . : . : . : . : . :
rJMFF049I14- ATTTAGGGGTTTCAAGTCCTTGACATCATCTGTATCA
JMSF003A11+ ATTTAGGGGTTTCAAGTCCTTGACATCATCTGTATCAAGAATACCAACAATGTCATCCTC
rJMSF003A11- ATTTAGGGGTTTCAAGTCCTTGACATCATCTGTATCAAGAATACCAACAATGTCATCCTC
rJMSF047D08- ATTTAGGGGTTTCAAGTCCTTGACATCATCTGTATCAAGAATACCAACAATGTCATCCTC
JMFF049I14+ ATTTAGGGGTTTCAAGTCCTTGACATCATCTGTATCAAGAATACCAACAATGTCATCCTC
JMSF047D08+ ATTTAGGGGTTTCAAGTCCTTGACATCATCTGTATCAAGAATACCAACAATGTCATCCTC
____________________________________________________________
consensus ATTTAGGGGTTTCAAGTCCTTGACATCATCTGTATCAAGAATACCAACAATGTCATCCTC
. : . : . : . : . : . :
JMSF003A11+ TTTTACTATTAGGTGCTTTGCTCCATTGAACTCTAACTCTGTCCCAGCATATTTTGAGTA
rJMSF003A11- TTTTACTATTAGGTGCTTTGCTCCATTGAACTCTAACTCTGTCCCAGCATATTTTGAGTA
rJMSF047D08- TTTTACTATTAGGTGCTTTGATCCATTGAACTCTAACTCTGTCCCAGCATATTTTGAGTA
JMFF049I14+ TTTTACTATTAGGTGCTTTGCTCCATTGAACTCTAACTCTGTCCCAGCATATTTTGAGTA
JMSF047D08+ TTTTACTATTAGGTGCTTTGATCCATTGAACTCTAACTCTGTCCCAGCATATTTTGAGTA
____________________________________________________________
consensus TTTTACTATTAGGTGCTTTGCTCCATTGAACTCTAACTCTGTCCCAGCATATTTTGAGTA
. : . : . : . : . : . :
JMSF003A11+ CACAATTTGGGTTCCAACCTTCACACT
rJMSF003A11- CACAATTTGGGTTCCAACCTTCACACT
rJMSF047D08- CACAATTTGGGTTCCAACCTTCACACTGATTTCCACCTTATTCTTCCCAATTTCACGGCC
JMFF049I14+ CACAATTTGGGTTCCAACCTTCACACTGATTTCCACCTTATTCTTCCCAATTTCACGGCC
JMSF047D08+ CACAATTTGGGTTCCAACCTTCACACTGATTTCCACCTTATTCTTCCCAATTTCACGGCC
____________________________________________________________
consensus CACAATTTGGGTTCCAACCTTCACACTGATTTCCACCTTATTCTTCCCAATTTCACGGCC
. : . : . : . : . : . :
rJMSF047D08- CTCTCCAACAGCAACAACCTCACCACCCTGGGGTTTTGACTGTGCAGTTGTTGGAAGTA
JMFF049I14+ CTCTCCAACAGCAACAACCTCACCACCCTGGGGTTTTGACTGTGCAGTTGTTGGAAGTAA
JMSF047D08+ CTCTCCAACAGCAACAACCTCACCACCCTGGGGTTTTGACTGTGCAGTTGTTGGAAGTAA
____________________________________________________________
consensus CTCTCCAACAGCAACAACCTCACCACCCTGGGGTTTTGACTGTGCAGTTGTTGGAAGTAA
. : . : . : . : . : . :
JMFF049I14+ GATACCACCAACACTCTTCTCCTCTGCAGGTCTTAACTTTACCAGTACTCTATCGCCCAA
JMSF047D08+ GATACCACCAACACTCTTCTCCTCTGCAGGTCTTAACTTTACCAGTACTCTATCGCCCAA
____________________________________________________________
consensus GATACCACCAACACTCTTCTCCTCTGCAGGTCTTAACTTTACCAGTACTCTATCGCCCAA
. : . : . : . : . : . :
JMFF049I14+ TGGTTTTAGTGAAGTGTACTTGGGGGTAATAGTGGTGGCAGCCTTGACGACGAGGGCAGG
JMSF047D08+ TGGTTTTAGTGAAGTGTACTTGGGGGTAATAGTGGTGGCAGCCTTGACGACGAGGGCAGG
____________________________________________________________
consensus TGGTTTTAGTGAAGTGTACTTGGGGGTAATAGTGGTGGCAGCCTTGACGACGAGGGCAGG
. : . : . : . : . : . :
JMFF049I14+ GAAACTTCGGCTTATATTCTGCCGGAGAGGAGCAAAAGATGCGATTTTGACGGTTCTGGA
JMSF047D08+ GAAACTTCGGCTTATATTCTGCCGGAGAGGAGCAAAAGATGCGATTTTGACGGTTCTGGA
____________________________________________________________
consensus GAAACTTCGGCTTATATTCTGCCGGAGAGGAGCAAAAGATGCGATTTTGACGGTTCTGGA
. : . : . : . : . : . :
JMFF049I14+ AGACCTGAGCCCTTCGAATAGAGCAAAACCCTTTGCCGAGATAGTTGATGCAGTAAGCTG
JMSF047D08+ AGACCTGAGCCCTTCGAATAGAGCAAAACCCTTTGCCGAGATAGTTGATGCAGTAAGCTG
____________________________________________________________
consensus AGACCTGAGCCCTTCGAATAGAGCAAAACCCTTTGCCGAGATAGTTGATGCAGTAAGCTG
. : . : . : . : . : . :
JMFF049I14+ AGTCGTTGTCATTCTCGTTCGTTTGACCCGAAATCTGTGAAGAAAGCGGGAGAGAAACCG
JMSF047D08+ AGTCGTTGTCATTCTCGTTCGTTTGACCCGAAATCTGTGAAGAAAGCGGGAGAGAAACCG
____________________________________________________________
consensus AGTCGTTGTCATTCTCGTTCGTTTGACCCGAAATCTGTGAAGAAAGCGGGAGAGAAACCG
. : . : . : . : . : . :
JMFF049I14+ TTGAACTACGCAGTGAGGGTAGTGAGACGAAATGGATAAAACTCCGGAAGG
JMSF047D08+ TTGAACTACGCAGTGAGGGTAGTGAGACGAAATGGATAAAACTCCGGAAGGTTCAAGATC
____________________________________________________________
consensus TTGAACTACGCAGTGAGGGTAGTGAGACGAAATGGATAAAACTCCGGAAGGTTCAAGATC