clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF005D18 | Sequence | 438 | 002437 (5) | ref|XP_009788012.1| | 1e-50 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris] | 737 | 009732 (6) | ref|XP_006356504.1| | 1e-72 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
JMFF020P15 | Sequence | 454 | 002437 (5) | ref|XP_009788012.1| | 3e-53 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris] | 724 | 009732 (6) | ref|XP_006356504.1| | 2e-63 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
JMSF006B24 | Sequence | 274 | 002437 (5) | ref|XP_009788012.1| | 8e-30 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris] | 493 | 005834 (3) | ref|XP_009771925.1| | 1e-50 | PREDICTED: subtilisin-like protease [Nicotiana sylvestris] |
JMSF038J24 | Sequence | 715 | 002437 (5) | ref|XP_009788012.1| | 9e-101 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris] | 800 | 009732 (6) | ref|XP_006356504.1| | 5e-86 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
JMSF046P20 | Sequence | 719 | 002437 (5) | ref|XP_009613182.1| | 5e-87 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana tomentosiformis] | 661 | 009732 (6) | ref|XP_006356504.1| | 3e-48 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
This contig is upended
. : . : . : . : . : . :
JMSF038J24+ CGAGACCCCAACTAAGGTTGTCCTGAACATAGTTCAAAATCCAGAGTGTAACCAT
JMSF046P20+ AAACCCGAGACCCCAACTAAGGTTGTCCTGAACATAGTTCAAAATCCAGAGTGTAACCAT
____________________________________________________________
consensus AAACCCGAGACCCCAACTAAGGTTGTCCTGAACATAGTTCAAAATCCAGAGTGTAACCAT
. : . : . : . : . : . :
JMSF038J24+ AACGCCAAAGCACATCCCGAAATACCACCAGTTGAAGAACGAGCTTTTGGCTTTGCATTC
JMSF046P20+ AACGCCAAAGCACATCCCGAAATACCACCAGTTGAAGAACGAGCTTTTGGCTTTGCATTC
____________________________________________________________
consensus AACGCCAAAGCACATCCCGAAATACCACCAGTTGAAGAACGAGCTTTTGGCTTTGCATTC
. : . : . : . : . : . :
JMSF038J24+ TTGCGGATCTTGAGTATCGAACTGATCAGCCCCGAAAGCTTGAACACAAGGCTTGTGCCC
JMSF046P20+ TTGCGGATCTTGAGTATCGAACTGATCAGCCCCGAAAGCTTGAACACAAGGCTTGTGCCC
____________________________________________________________
consensus TTGCGGATCTTGAGTATCGAACTGATCAGCCCCGAAAGCTTGAACACAAGGCTTGTGCCC
. : . : . : . : . : . :
JMSF038J24+ ACCTTGTGCTAGTGCCACAAGGTATAGAGCAAAGAAGAAGAAGATAACTTGGAACTGAGG
JMSF046P20+ ACCTTGTGCTAGTGCCACAAGGTATAGAGCAAAGAAGAAGAAGATAACTTGGAACTGAGG
____________________________________________________________
consensus ACCTTGTGCTAGTGCCACAAGGTATAGAGCAAAGAAGAAGAAGATAACTTGGAACTGAGG
. : . : . : . : . : . :
JMFF020P15+ GAGAGTCAGAAGACTCGAAAGGAAGCACAGTAGAGATGGT
JMFF005D18+ GGAAGCACAGTAGAGATGGT
JMSF038J24+ AGGAGAGCCTGCACCATTTTGAGAGTCAGAAGACTCGAAAGGAAGCACAGTAGAGATGGT
JMSF046P20+ AGGAGAGCCTGCACCATTTTGAGAGTCAGAAGACTCGAAAGGAAGCACAGTAGAGATGGT
____________________________________________________________
consensus AGGAGAGCCTGCACCATTTTGAGAGTCAGAAGACTCGAAAGGAAGCACAGTAGAGATGGT
. : . : . : . : . : . :
JMFF020P15+ CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTNCCGACC
JMFF005D18+ CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTACCGACC
JMSF038J24+ CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTACCGACC
JMSF046P20+ CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTACCGACC
____________________________________________________________
consensus CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTACCGACC
. : . : . : . : . : . :
JMFF020P15+ AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
JMFF005D18+ AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
JMSF038J24+ AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
JMSF046P20+ AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
____________________________________________________________
consensus AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
. : . : . : . : . : . :
JMFF020P15+ GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
JMFF005D18+ GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
JMSF038J24+ GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
JMSF006B24+ CCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
JMSF046P20+ GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
____________________________________________________________
consensus GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
. : . : . : . : . : . :
JMFF020P15+ TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
JMFF005D18+ TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
JMSF038J24+ TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
JMSF006B24+ TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
JMSF046P20+ TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
____________________________________________________________
consensus TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
. : . : . : . : . : . :
JMFF020P15+ GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
JMFF005D18+ GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
JMSF038J24+ GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
JMSF006B24+ GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
JMSF046P20+ GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATC-GGCAGCGGGGCGGCCTTTGAAATC
____________________________________________________________
consensus GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
. : . : . : . : . : . :
JMFF020P15+ GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
JMFF005D18+ GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
JMSF038J24+ GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
JMSF006B24+ GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
JMSF046P20+ GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
____________________________________________________________
consensus GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
. : . : . : . : . : . :
JMFF020P15+ TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGC
JMFF005D18+ TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGT
JMSF038J24+ TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGT
JMSF006B24+ TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGT
JMSF046P20+ TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGTCC
____________________________________________________________
consensus TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGTCC