Contig 002432:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008N09Sequence294002432 (5)729012525 (4)ref|XP_004232810.1|7e-73PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF013G19Sequence262002432 (5)658012525 (4)ref|XP_004232810.1|3e-70PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF044M13Sequence748002432 (5)ref|XP_009593960.1|7e-45PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Nicotiana777012525 (4)ref|XP_004232810.1|2e-86PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF045G22Sequence720002432 (5)ref|XP_009593960.1|9e-38PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Nicotiana749012525 (4)ref|XP_004232810.1|1e-86PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF051J24Sequence325002432 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044M13+ CATATATGCTTCAGTCAACTCTTTTCTT
                      ____________________________________________________________
consensus CATATATGCTTCAGTCAACTCTTTTCTT
 
. : . : . : . : . : . :
JMSF044M13+ TCCCTATTAATGATTGGAGCACGAATGGCCATATAGATTCTTTGACAAGAAAAAACTGTG
JMSF045G22+ TCCCTATTAATGATTGGAGCACGAATGGCCATATAGATTCTTTGACAAGAAAAAACTGTG
                      ____________________________________________________________
consensus TCCCTATTAATGATTGGAGCACGAATGGCCATATAGATTCTTTGACAAGAAAAAACTGTG
 
. : . : . : . : . : . :
JMSF044M13+ ACAACAACATATAATAACAAAACAGCAACTCTTTTTGGTTCCCAGTTCTTAATATCCTTC
JMSF045G22+ ACAACAACATATAATAACAAAACAGCAACTCTTTTTGGTTCCCAGTTCTTAATATCCTTC
                      ____________________________________________________________
consensus ACAACAACATATAATAACAAAACAGCAACTCTTTTTGGTTCCCAGTTCTTAATATCCTTC
 
. : . : . : . : . : . :
JMSF044M13+ CAAAGCTCCCATCTGTTCCACTCAATAAACTCAGGAAACAGCTCGAACCTAAAACGGTCG
JMSF045G22+ CAAAGCTCCCATCTGTTCCACTCAATAAACTCAGGAAACAGCTCGAACCTAAAACGGTCG
                      ____________________________________________________________
consensus CAAAGCTCCCATCTGTTCCACTCAATAAACTCAGGAAACAGCTCGAACCTAAAACGGTCG
 
. : . : . : . : . : . :
JMSF044M13+ AGCTGAGCTTGGCCCTCCGTGGCCGAGTCATAAGCGTTGTTCGCAAATTCAGAAGCTCGA
JMSF045G22+ AGCTGAGCTTGGCCCTCCGTGGCCGAGTCATTAGCGTTGTTCGCAAATTCAGAAGCTCGA
                      ____________________________________________________________
consensus AGCTGAGCTTGGCCCTCCGTGGCCGAGTCATTAGCGTTGTTCGCAAATTCAGAAGCTCGA
 
. : . : . : . : . : . :
JMSF044M13+ ACCTTAGCATCTTCAACATCAAATCCCGTCTCTTTCTTCACGGACTCTCCCAATTTCTTG
JMSF045G22+ ACCTTAGCATCTTCAACATCAAATCCCGTCTCTTTCTTCACGGACTCTCCCAATTTCTTG
                      ____________________________________________________________
consensus ACCTTAGCATCTTCAACATCAAATCCCGTCTCTTTCTTCACGGACTCTCCCAATTTCTTG
 
. : . : . : . : . : . :
JMSF044M13+ AGGAAACGTTCGGAACCGCGGCGAATGGACTGCGAAAGGTGAAGCCAAGAAAACCCTTGG
JMSF051J24+ GGCGAATGGACTGCGAAAGGTGAAGCCAAGAAAACCCTTGG
JMSF008N09+ ACCCTTGG
JMSF045G22+ AGGAAACGTTCGGAACCGCGGCGAATGGACTGCGAAAGGTGAAGCCAAGAAAACCCTTGG
                      ____________________________________________________________
consensus AGGAAACGTTCGGAACCGCGGCGAATGGACTGCGAAAGGTGAAGCCAAGAAAACCCTTGG
 
. : . : . : . : . : . :
JMSF044M13+ GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
JMSF051J24+ GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
JMSF008N09+ GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
JMSF045G22+ GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
                      ____________________________________________________________
consensus GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
 
. : . : . : . : . : . :
JMSF044M13+ TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
JMSF051J24+ TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
JMSF008N09+ TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
JMSF013G19+ GCTATGAAAGACAAGATTAGAGTAAGCN
JMSF045G22+ TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
                      ____________________________________________________________
consensus TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
 
. : . : . : . : . : . :
JMSF044M13+ TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
JMSF051J24+ TGTTTTCCGATGTTAAGTTTGATCTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
JMSF008N09+ TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
JMSF013G19+ TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
JMSF045G22+ TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
                      ____________________________________________________________
consensus TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
 
. : . : . : . : . : . :
JMSF044M13+ GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
JMSF051J24+ GTAGTGCTTACATCCANGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
JMSF008N09+ GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
JMSF013G19+ GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
JMSF045G22+ GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
                      ____________________________________________________________
consensus GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
 
. : . : . : . : . : . :
JMSF044M13+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTATGNGACGCCAGCAAGG
JMSF051J24+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACT
JMSF008N09+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTAT
JMSF013G19+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTATGTGACGCCAGCAAGG
JMSF045G22+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTATGTGACGCCAGCAAGG
                      ____________________________________________________________
consensus TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTATGTGACGCCAGCAAGG
 
. : . : . : . : . : . :
JMSF044M13+ GGTTTAGAGGTTTATCTTCAACAACACTTCGAGACTACAATGACAGTAACTGT
JMSF013G19+ GGTTTAGAGGTTTATCTTCAACAACACTTCGAGACTACAATGACAGTAACTGT
JMSF045G22+ GGTTTAGAGGTTTATCTTCAACAACACTTCGAGACTACAATGACAGTAACTGTGCCCCAA
                      ____________________________________________________________
consensus GGTTTAGAGGTTTATCTTCAACAACACTTCGAGACTACAATGACAGTAACTGTGCCCCAA