| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008N09 | Sequence | 294 | 002432 (5) | 729 | 012525 (4) | ref|XP_004232810.1| | 7e-73 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l | |||
| JMSF013G19 | Sequence | 262 | 002432 (5) | 658 | 012525 (4) | ref|XP_004232810.1| | 3e-70 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l | |||
| JMSF044M13 | Sequence | 748 | 002432 (5) | ref|XP_009593960.1| | 7e-45 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Nicotiana | 777 | 012525 (4) | ref|XP_004232810.1| | 2e-86 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l |
| JMSF045G22 | Sequence | 720 | 002432 (5) | ref|XP_009593960.1| | 9e-38 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Nicotiana | 749 | 012525 (4) | ref|XP_004232810.1| | 1e-86 | PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l |
| JMSF051J24 | Sequence | 325 | 002432 (5) | ||||||||
This contig is upended
. : . : . : . : . : . :
JMSF044M13+ CATATATGCTTCAGTCAACTCTTTTCTT
____________________________________________________________
consensus CATATATGCTTCAGTCAACTCTTTTCTT
. : . : . : . : . : . :
JMSF044M13+ TCCCTATTAATGATTGGAGCACGAATGGCCATATAGATTCTTTGACAAGAAAAAACTGTG
JMSF045G22+ TCCCTATTAATGATTGGAGCACGAATGGCCATATAGATTCTTTGACAAGAAAAAACTGTG
____________________________________________________________
consensus TCCCTATTAATGATTGGAGCACGAATGGCCATATAGATTCTTTGACAAGAAAAAACTGTG
. : . : . : . : . : . :
JMSF044M13+ ACAACAACATATAATAACAAAACAGCAACTCTTTTTGGTTCCCAGTTCTTAATATCCTTC
JMSF045G22+ ACAACAACATATAATAACAAAACAGCAACTCTTTTTGGTTCCCAGTTCTTAATATCCTTC
____________________________________________________________
consensus ACAACAACATATAATAACAAAACAGCAACTCTTTTTGGTTCCCAGTTCTTAATATCCTTC
. : . : . : . : . : . :
JMSF044M13+ CAAAGCTCCCATCTGTTCCACTCAATAAACTCAGGAAACAGCTCGAACCTAAAACGGTCG
JMSF045G22+ CAAAGCTCCCATCTGTTCCACTCAATAAACTCAGGAAACAGCTCGAACCTAAAACGGTCG
____________________________________________________________
consensus CAAAGCTCCCATCTGTTCCACTCAATAAACTCAGGAAACAGCTCGAACCTAAAACGGTCG
. : . : . : . : . : . :
JMSF044M13+ AGCTGAGCTTGGCCCTCCGTGGCCGAGTCATAAGCGTTGTTCGCAAATTCAGAAGCTCGA
JMSF045G22+ AGCTGAGCTTGGCCCTCCGTGGCCGAGTCATTAGCGTTGTTCGCAAATTCAGAAGCTCGA
____________________________________________________________
consensus AGCTGAGCTTGGCCCTCCGTGGCCGAGTCATTAGCGTTGTTCGCAAATTCAGAAGCTCGA
. : . : . : . : . : . :
JMSF044M13+ ACCTTAGCATCTTCAACATCAAATCCCGTCTCTTTCTTCACGGACTCTCCCAATTTCTTG
JMSF045G22+ ACCTTAGCATCTTCAACATCAAATCCCGTCTCTTTCTTCACGGACTCTCCCAATTTCTTG
____________________________________________________________
consensus ACCTTAGCATCTTCAACATCAAATCCCGTCTCTTTCTTCACGGACTCTCCCAATTTCTTG
. : . : . : . : . : . :
JMSF044M13+ AGGAAACGTTCGGAACCGCGGCGAATGGACTGCGAAAGGTGAAGCCAAGAAAACCCTTGG
JMSF051J24+ GGCGAATGGACTGCGAAAGGTGAAGCCAAGAAAACCCTTGG
JMSF008N09+ ACCCTTGG
JMSF045G22+ AGGAAACGTTCGGAACCGCGGCGAATGGACTGCGAAAGGTGAAGCCAAGAAAACCCTTGG
____________________________________________________________
consensus AGGAAACGTTCGGAACCGCGGCGAATGGACTGCGAAAGGTGAAGCCAAGAAAACCCTTGG
. : . : . : . : . : . :
JMSF044M13+ GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
JMSF051J24+ GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
JMSF008N09+ GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
JMSF045G22+ GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
____________________________________________________________
consensus GACCCATCTGAAGAAGACGAAGAAGAAGCTAGAAATATGGGCCTCCTCCGGCGGGAAAGC
. : . : . : . : . : . :
JMSF044M13+ TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
JMSF051J24+ TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
JMSF008N09+ TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
JMSF013G19+ GCTATGAAAGACAAGATTAGAGTAAGCN
JMSF045G22+ TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
____________________________________________________________
consensus TTAAGGTTCCGTCTTTGATTGAAAAGATGCCGGCTATGAAAGACAAGATTAGAGTAAGCT
. : . : . : . : . : . :
JMSF044M13+ TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
JMSF051J24+ TGTTTTCCGATGTTAAGTTTGATCTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
JMSF008N09+ TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
JMSF013G19+ TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
JMSF045G22+ TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
____________________________________________________________
consensus TGTTTTCCGATGTTAAGTTTGATTTGAGATGAATGTAACGGGCTTGTACAGTGACGGATG
. : . : . : . : . : . :
JMSF044M13+ GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
JMSF051J24+ GTAGTGCTTACATCCANGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
JMSF008N09+ GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
JMSF013G19+ GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
JMSF045G22+ GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
____________________________________________________________
consensus GTAGTGCTTACATCCATGGAGACGCTTAGGGTCTCAAATGTGAGAGTGTGATATCGACTC
. : . : . : . : . : . :
JMSF044M13+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTATGNGACGCCAGCAAGG
JMSF051J24+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACT
JMSF008N09+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTAT
JMSF013G19+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTATGTGACGCCAGCAAGG
JMSF045G22+ TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTATGTGACGCCAGCAAGG
____________________________________________________________
consensus TACCGCGGTTTCAGCTGCGGTGGTCGTCTCGTCGGAGTTCACTATGTGACGCCAGCAAGG
. : . : . : . : . : . :
JMSF044M13+ GGTTTAGAGGTTTATCTTCAACAACACTTCGAGACTACAATGACAGTAACTGT
JMSF013G19+ GGTTTAGAGGTTTATCTTCAACAACACTTCGAGACTACAATGACAGTAACTGT
JMSF045G22+ GGTTTAGAGGTTTATCTTCAACAACACTTCGAGACTACAATGACAGTAACTGTGCCCCAA
____________________________________________________________
consensus GGTTTAGAGGTTTATCTTCAACAACACTTCGAGACTACAATGACAGTAACTGTGCCCCAA