Contig 002428:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006P07Sequence238002428 (2)
JMSF044P22Sequence760002428 (2)ref|XP_009604921.1|2e-47PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Nicotiana t588022641emb|CDP17778.1|1e-13unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF044P22+                               TTAATGACAAATCACTTTCATCAAGGGCAATCATATGCTG
                      ____________________________________________________________
consensus                                 TTAATGACAAATCACTTTCATCAAGGGCAATCATATGCTG
 
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JMSF044P22+           AAGTTCCTTTCTTGATTTACCAAGCTCTTTCAGGACACTATCTATTTGATCCAGAACTTC
                      ____________________________________________________________
consensus             AAGTTCCTTTCTTGATTTACCAAGCTCTTTCAGGACACTATCTATTTGATCCAGAACTTC
 
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JMSF044P22+           TGAAAATTGATGCTTCCTCTCCAATTTTCTCTTTTTCATTTCTTCTAGCAGAGGCATAAT
                      ____________________________________________________________
consensus             TGAAAATTGATGCTTCCTCTCCAATTTTCTCTTTTTCATTTCTTCTAGCAGAGGCATAAT
 
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JMSF044P22+           AGCTTGAAGCTCTGTCTTCAAGCTTCTTGAACTCTGTCTGACATTAACTGGCTGTTCCCC
                      ____________________________________________________________
consensus             AGCTTGAAGCTCTGTCTTCAAGCTTCTTGAACTCTGTCTGACATTAACTGGCTGTTCCCC
 
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JMSF044P22+           AAGTGCTGCACAGATACGTGCAAGTTCTGCTTCAGACTCAGCAACCGCTTGCCGCAGCTG
                      ____________________________________________________________
consensus             AAGTGCTGCACAGATACGTGCAAGTTCTGCTTCAGACTCAGCAACCGCTTGCCGCAGCTG
 
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JMSF044P22+           AGCACAGCTGCGGCTTGCCTGGTCCACTTTTCTTCTATATGCTTCTAGGCACTCCTGTTC
                      ____________________________________________________________
consensus             AGCACAGCTGCGGCTTGCCTGGTCCACTTTTCTTCTATATGCTTCTAGGCACTCCTGTTC
 
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JMSF044P22+           AAGTTGACAGAGCATCTTATCCCTTTCAATCTCAGGCTCTCCAATCTCATTCCATATTTT
                      ____________________________________________________________
consensus             AAGTTGACAGAGCATCTTATCCCTTTCAATCTCAGGCTCTCCAATCTCATTCCATATTTT
 
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JMSF006P07+                                                        AGACTGATCGTTCTG
JMSF044P22+           CTGCAGCTCAGATAGAAGAGAGCAACAAGTTGTTTCCATTCGCAAAGACTGATCGTTCTG
                      ____________________________________________________________
consensus             CTGCAGCTCAGATAGAAGAGAGCAACAAGTTGTTTCCATTCGCAAAGACTGATCGTTCTG
 
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JMSF006P07+           GCGGTTATACATGTCAGAAGCAATTCTCCCTAACAGTCCTGGCGGTGAAAGAAAGCGCGA
JMSF044P22+           GCGGTTATACATGTCAGAAGCAATTCTCCCTAACAGTCCTGGCGGTGAAAGAAAGCGCGA
                      ____________________________________________________________
consensus             GCGGTTATACATGTCAGAAGCAATTCTCCCTAACAGTCCTGGCGGTGAAAGAAAGCGCGA
 
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JMSF006P07+           TGTATGAGAACTGAGAGAACAAGCCACAAAGGAGAACGGTGATCGCCGGAATTCAAAAGC
JMSF044P22+           TGTATGAGAACTGAGAGAACAAGCCACAAAGGAGAACGGTGATCGCCGGAATTCAAAAGC
                      ____________________________________________________________
consensus             TGTATGAGAACTGAGAGAACAAGCCACAAAGGAGAACGGTGATCGCCGGAATTCAAAAGC
 
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JMSF006P07+           TGTGAGTGAAAGAGTGGGAAAAGAAGGTCGGAAAATGACGTAACGAAATGGTGGAGAGTG
JMSF044P22+           TGTGAGTGAAAGAGTGGGAAAAGAAGGTCGGAAAATGACGTAACGAAATGGTGGAGAGTG
                      ____________________________________________________________
consensus             TGTGAGTGAAAGAGTGGGAAAAGAAGGTCGGAAAATGACGTAACGAAATGGTGGAGAGTG
 
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JMSF006P07+           AGAATGGCGATCAGTTGCGGTGGTTTTGTCCTGTTTCCTAAC                  
JMSF044P22+           AGAATGGCGATCAGTTGCGGTGGTTTTGTCCTGTTTCCTAACGGTTAGTAGTGTAAATTG
                      ____________________________________________________________
consensus             AGAATGGCGATCAGTTGCGGTGGTTTTGTCCTGTTTCCTAACGGTTAGTAGTGTAAATTG
 
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JMSF044P22+           GTGAATTCATTATAGAAATCCGTAACGCTTGTTTGGTTGCAGATTGTGCCATTCAAACCC
                      ____________________________________________________________
consensus             GTGAATTCATTATAGAAATCCGTAACGCTTGTTTGGTTGCAGATTGTGCCATTCAAACCC