Contig 002427:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022K16Sequence456002427 (2)ref|XP_006352796.1|2e-53PREDICTED: NPL4-like protein 1-like [Solanum tuberosum]731011061 (4)ref|XP_010279622.1|2e-81PREDICTED: NPL4-like protein 1 [Nelumbo nucifera]
JMSF044P11Sequence658002427 (2)ref|XP_006352796.1|5e-101PREDICTED: NPL4-like protein 1-like [Solanum tuberosum]598011061 (4)gb|ACU21270.1|2e-51unknown [Glycine max]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044P11+             CCGGAGACACGGTCCCGTACATAAACCCTCCGCGCTTCACGGCGAAAGCGAGCGTCTC
                      ____________________________________________________________
consensus               CCGGAGACACGGTCCCGTACATAAACCCTCCGCGCTTCACGGCGAAAGCGAGCGTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044P11+           ATTGACGTAATGCTGGAAGGCATTGGCGGCGTCTCGATCGAAGGAGACGAGCTCGCAGTG
                      ____________________________________________________________
consensus             ATTGACGTAATGCTGGAAGGCATTGGCGGCGTCTCGATCGAAGGAGACGAGCTCGCAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044P11+           AGGGTCTTCCTGTCTGGAGACGCGCATTTGCTTGGCGATGAGGTCATCCATGGTCATCTT
                      ____________________________________________________________
consensus             AGGGTCTTCCTGTCTGGAGACGCGCATTTGCTTGGCGATGAGGTCATCCATGGTCATCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022K16+            CTCCCGAAGGAGCCGGCGGGGTGGAAGGCCGGGCCGGCGACGGTCCGCTCGCCGTCGTA
JMSF044P11+           CCTCCCGAAGGAGCCGGCGGGGTGGAAGGCCGGGCCGGCGACGGTCCGCTCGCCGTCGTA
                      ____________________________________________________________
consensus             CCTCCCGAAGGAGCCGGCGGGGTGGAAGGCCGGGCCGGCGACGGTCCGCTCGCCGTCGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022K16+           GGCTAGGTAGACGATGGAGCCGTGGGCGATGTTGAGCGAAGAGAGCGGGGCGTGTGGATT
JMSF044P11+           GGCTAGGTAGACGATGGAGCCGTGGGCGATGTTGAGCGAAGAGAGCGGGGCGTGTGGATT
                      ____________________________________________________________
consensus             GGCTAGGTAGACGATGGAGCCGTGGGCGATGTTGAGCGAAGAGAGCGGGGCGTGTGGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022K16+           GGACATGTCGGTGAATCGGGCAATGTCGTCTAGGGTTTTGGCGAGCAGGAGGTTTTGATT
JMSF044P11+           GGACATGTCGGTGAATCGGGCAATGTCGTCTAGGGTTTTGGCGAGCAGGAGGTTTTGATT
                      ____________________________________________________________
consensus             GGACATGTCGGTGAATCGGGCAATGTCGTCTAGGGTTTTGGCGAGCAGGAGGTTTTGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022K16+           GGCGGAGAGGGTTTGAGATTGGACGGGAACTCGGAGCTGGGCCTCGATTTCCGATTTGAG
JMSF044P11+           GGCGGAGAGGGTTTGAGATTGGACGGGAACTCGGAGCTGGGCCTCGATTTCCGATTTGAG
                      ____________________________________________________________
consensus             GGCGGAGAGGGTTTGAGATTGGACGGGAACTCGGAGCTGGGCCTCGATTTCCGATTTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022K16+           CTGAGCGATTGTGGCGTGTGGGGTGTCAATTGTCACCCGCTCCAACCCATCCCTGCTCCG
JMSF044P11+           CTGAGCGATTGTGGCGTGTGGGGTGTCAATTGTCACCCGCTCCAACCCATCCCTGCTCCG
                      ____________________________________________________________
consensus             CTGAGCGATTGTGGCGTGTGGGGTGTCAATTGTCACCCGCTCCAACCCATCCCTGCTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022K16+           AACTCTGATCATCAACTTCGCCATATGCGATCCCTGGGTGGGTTCTTATCCAATACACCA
JMSF044P11+           AACTCTGATCATCAACTTCGCCATATGCGATCCCTGGGTGGGTTCTTATCCAATACACCA
                      ____________________________________________________________
consensus             AACTCTGATCATCAACTTCGCCATATGCGATCCCTGGGTGGGTTCTTATCCAATACACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022K16+           AGAACCCGATCCTCCCAAGTTGTAAGCGTCGTCTGAGACACAGTGATGAAGAGGTTTCAC
JMSF044P11+           AGAACCCGATCCTCCCAAGTTGTAAGCGTCGTCTGAGACACAGTGATGAAGAGGTTTCAC
                      ____________________________________________________________
consensus             AGAACCCGATCCTCCCAAGTTGTAAGCGTCGTCTGAGACACAGTGATGAAGAGGTTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022K16+           ACTGCTCCACCCTGAAGAAGAAGAGGAAGAAGAAGAG                       
JMSF044P11+           ACTGCTCCACCCTGAAGAAGAAGAGGAAGAAGAAGAGAGGAGTTGCGTTCTTCAATATTC
                      ____________________________________________________________
consensus             ACTGCTCCACCCTGAAGAAGAAGAGGAAGAAGAAGAGAGGAGTTGCGTTCTTCAATATTC