Contig 002424:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF044M01Sequence750002424 (2)ref|XP_009759521.1|5e-43PREDICTED: protein LONGIFOLIA 1 isoform X2 [Nicotiana sylvestris]
JMSF045A06Sequence706002424 (2)ref|XP_009759520.1|1e-40PREDICTED: protein LONGIFOLIA 1 isoform X1 [Nicotiana sylvestris]692015154ref|XP_002520967.1|8e-75hypothetical protein RCOM_0991200 [Ricinus communis] gb|EEF41384.1| hypothetical

Alignment

This contig is upended


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JMSF044M01+                                         TCGATGCTGTTTCTCGTTATCAGCTAGAAC
                      ____________________________________________________________
consensus                                           TCGATGCTGTTTCTCGTTATCAGCTAGAAC
 
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JMSF045A06+                  TTGGCATTTTCACAATGGTTTGCCGATATACTTGAAGCATTGATTTGGATCTC
JMSF044M01+           TCCATCTTTGGCATTTTCACAATGGTTTGCCGATATACTTGAAGCATTGATTTGGATCTC
                      ____________________________________________________________
consensus             TCCATCTTTGGCATTTTCACAATGGTTTGCCGATATACTTGAAGCATTGATTTGGATCTC
 
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JMSF045A06+           CTTCGGGTGAAGGCTTCCCTTAGCATCAACTGTGGCTCGGCTGTCAAGCGAGAGCCTTGG
JMSF044M01+           CTTCGGGTGAAGGCTTCCCTTAGCATCAACTGTGGCTCGGCTGTCAAGCGAGAGCCTTGG
                      ____________________________________________________________
consensus             CTTCGGGTGAAGGCTTCCCTTAGCATCAACTGTGGCTCGGCTGTCAAGCGAGAGCCTTGG
 
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JMSF045A06+           AGCTTCTTTCCGGATCTTCCAAGAAGACCTTGCCCCCCCATCTTTCACTTCAAAAATCGG
JMSF044M01+           AGCTTCTTTCCGGATCTTCCAAGAAGACCTTGCCCCCCCATCTTTCACTTCAAAAATCGG
                      ____________________________________________________________
consensus             AGCTTCTTTCCGGATCTTCCAAGAAGACCTTGCCCCCCCATCTTTCACTTCAAAAATCGG
 
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JMSF045A06+           AAGAGGAAGTGGAGATTTTGGTGGCGTCTTGGTTGGAACAAAAGCACACTCTTTTAATCG
JMSF044M01+           AAGAGGAAGTGGAGATTTTGGTGGCGTCTTGGTTGGAACAAAAGCACACTCTTTTAATCG
                      ____________________________________________________________
consensus             AAGAGGAAGTGGAGATTTTGGTGGCGTCTTGGTTGGAACAAAAGCACACTCTTTTAATCG
 
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JMSF045A06+           TTCTGGACTAGGTGCAGCCACAACTTTTGCTGGATGCCCTTTCACCCGTTCTTTTGCAAT
JMSF044M01+           TTCTGGACTAGGTGCAGCCACAACTTTTGCTGGATGCCCTTTCACCCGTTCTTTTGCAAT
                      ____________________________________________________________
consensus             TTCTGGACTAGGTGCAGCCACAACTTTTGCTGGATGCCCTTTCACCCGTTCTTTTGCAAT
 
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JMSF045A06+           TTCCTGGGACACAGCTATGTTTTTCGGCTCTAACGTGTCATTAACCTCCGTGAAAGGAGG
JMSF044M01+           TTCCTGGGACACAGCTATGTTTTTCGGCTCTAACGTGTCATTAACCTCCGTGAAAGGAGG
                      ____________________________________________________________
consensus             TTCCTGGGACACAGCTATGTTTTTCGGCTCTAACGTGTCATTAACCTCCGTGAAAGGAGG
 
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JMSF045A06+           AAGACGCTTAGTGGTATACAGCCTTTTGCTGGCTAAAATGTGATGGCGTTCAAAAAGCTG
JMSF044M01+           AAGACGCTTAGTGGTATACAGCCTTTTGCTGGCTAAAATGTGATGGCGTTCAAAAAGCTG
                      ____________________________________________________________
consensus             AAGACGCTTAGTGGTATACAGCCTTTTGCTGGCTAAAATGTGATGGCGTTCAAAAAGCTG
 
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JMSF045A06+           AAGAAATCCAGACATACACCCCATCTTCCTATCATCCATGTTCCAAGATTAAGGAAGCAA
JMSF044M01+           AAGAAATCCAGACATACACCCCATCTTCCTATCATCCATGTTCCAAGATTAAGGAAGCAA
                      ____________________________________________________________
consensus             AAGAAATCCAGACATACACCCCATCTTCCTATCATCCATGTTCCAAGATTAAGGAAGCAA
 
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JMSF045A06+           ACTTATTGCAATCACCTGGAGGTCGAGGAGAAGGGGTTACACACACACAGATCTGCCGCC
JMSF044M01+           ACTTATTGCAATCACCTGGAGGTCGAGGAGAAGGGGTTACACACACACAGATCTGCCGCC
                      ____________________________________________________________
consensus             ACTTATTGCAATCACCTGGAGGTCGAGGAGAAGGGGTTACACACACACAGATCTGCCGCC
 
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JMSF045A06+           ATTGGTCTAAGAGAGTTTTGGGTACACTATAAGCTCCAAAACAACGGTCTTTACTGACAC
JMSF044M01+           ATTGGTCTAAGAGAGTTTTGGGTACACTATAAGCTCCAAAACAACGGTCTTTACTGACAC
                      ____________________________________________________________
consensus             ATTGGTCTAAGAGAGTTTTGGGTACACTATAAGCTCCAAAACAACGGTCTTTACTGACAC
 
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JMSF045A06+           ACTCGTATATCTAGCATACATATATATTAGTTGGAGATCAGTTTAGGTCCAGAAAACCAC
JMSF044M01+           ACTCGTATATCTAGCATACATATATATTAGTTGGAGATCAGTTTAGGTCCAGAAAACCAC
                      ____________________________________________________________
consensus             ACTCGTATATCTAGCATACATATATATTAGTTGGAGATCAGTTTAGGTCCAGAAAACCAC
 
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JMSF045A06+           AGGGGAGGGGACTGGGGGAGCCAGGTATCGTTTTGTGTTGCCATCTCTGAGC        
JMSF044M01+           AGGGGAGGGGACTGGGGGAGCCAGGTATCGTTTTGTGTTGCCATCTCTGAGCAACTCCCC
                      ____________________________________________________________
consensus             AGGGGAGGGGACTGGGGGAGCCAGGTATCGTTTTGTGTTGCCATCTCTGAGCAACTCCCC