Contig 002414:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017A21Sequence466002414 (7)781004384 (2)dbj|BAF64710.1|4e-08putative transposase [Ipomoea tricolor]
JMSF022J12Sequence678002414 (7)643014088 (3)dbj|BAF64710.1|5e-08putative transposase [Ipomoea tricolor]
JMSF023D11Sequence681002414 (7)735014088 (3)dbj|BAF64710.1|3e-23putative transposase [Ipomoea tricolor]
JMSF043K11Sequence785002414 (7)681014088 (3)dbj|BAF64710.1|1e-19putative transposase [Ipomoea tricolor]
JMSF046A08Sequence748002414 (7)684008086 (5)
JMSF049L22Sequence679002414 (7)112019452
JMSF052D22Sequence666002414 (7)865008086 (5)

Alignment

This contig is upended


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JMSF043K11+                                                                  AAATC
                      ____________________________________________________________
consensus                                                                    AAATC
 
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JMSF046A08+                                                                    AAT
JMSF043K11+           ATTTTAAACATTAATATCAAATTCAACTGTTCCCAAGAAACACTCAACAATCATATCAAT
                      ____________________________________________________________
consensus             ATTTTAAACATTAATATCAAATTCAACTGTTCCCAAGAAACACTCAACAATCATATCAAT
 
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JMSF046A08+           TATTACTGCTAATTCATTTTGCACACAAAACACACTTTTTTAGACAAATAATACAATCAA
JMSF023D11+                                                    AGACAAATAATNCAATCAA
JMSF049L22+                                                    AGACAAATAATNCAATCAA
JMSF052D22+                                                                 AATCAA
JMSF022J12+                                                     GACANATAATNCANTCAA
JMSF043K11+           TATTACTGCTAATTCATTTTGCACACAAAACACACTTTTTTAGACAAATAATACAATCAA
                      ____________________________________________________________
consensus             TATTACTGCTAATTCATTTTGCACACAAAACACACTTTTTTAGACAAATAATACAATCAA
 
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JMSF046A08+           ATAAACACCAACTGATATAAAACCACTAAACAGAAAATACTCAGACAGTGCAAATATTGA
JMSF023D11+           ATAAACACCAACTGATATAAAACCACTAAACAGAAAATACTCAGACAGTGCAAATATTGA
JMSF049L22+           ATAAACACCAACTGATATAAAACCACTAAACAGAAAATACTCAGACAGTGCAAATATTGA
JMSF052D22+           ATAAACACCAACTGATATAAAACCACTAAACAGAAAATACTCAGACAGTGCAAATATTGA
JMSF022J12+           ATAAACACCAACTGATATAAAACCNCTAAACAGAAAATACTCAGACAGTGCAAATATTGA
JMSF043K11+           ATAAACACCAACTGATATAAAACCACTAAACAGAAAATACTCAGACAGTGCAAATATTGA
                      ____________________________________________________________
consensus             ATAAACACCAACTGATATAAAACCACTAAACAGAAAATACTCAGACAGTGCAAATATTGA
 
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JMSF046A08+           AAGTTTCACTTTTACCACACAAAGAAAATCCACTAAGTAATCATGCGGAAAATTCTCAGC
JMSF023D11+           AAGTTTCACTTTTACCACACAAAGAAAATCCACTAAGTAATCATGCGGAAAATTCTCAGC
JMSF049L22+           AAGTTTCACTTTTACCACACAAAGAAAATCCACTAAGTAATCATGCGGAAAATTCTCAGC
JMSF052D22+           AAGTTTCACTTTTACCACACAAAGAAAATCCACTAAGTAATCATGCGGAAAATTCTCAGC
JMSF022J12+           AAGTTTCACTTTTACCACACAAAGAAAATCCACTAAGTAATCATGCGGAAAATTCTCAGC
JMSF043K11+           AAGTTTCACTTTTACCACACAAAGAAAATCCACTAAGTAATCATGCGGAAAATTCTCAGC
                      ____________________________________________________________
consensus             AAGTTTCACTTTTACCACACAAAGAAAATCCACTAAGTAATCATGCGGAAAATTCTCAGC
 
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JMSF046A08+           TCTACGATTATAGGTAGCAAAAGGAAGCAGGCAATTAATACTCCAGGTAACCTAAGCACA
JMSF023D11+           TCTACGATTATAGGTAGCAAAAGGAAGCAGGCAATTAATACTCCAGGTAACCTAAGCACA
JMSF049L22+           TCTACGATTATAGGTAGCAAAAGGAAGCAGGCAATTAATACTCCAGGTAACCTAAGCACA
JMSF052D22+           TCTACGATTATAGGTAGCAAAAGGAAGCAGGCAATTAATACTCCAGGTAACCTAAGCACA
JMSF022J12+           TCTACGATTATAGGTAGCAAAAGGAAGCAGGCAATTAATACTCCAGGTAACCTAAGCACA
JMSF043K11+           TCTACGATTATAGGTAGCAAAAGGAAGCAGGCAATTAATACTCCAGGTAACCTAAGCACA
                      ____________________________________________________________
consensus             TCTACGATTATAGGTAGCAAAAGGAAGCAGGCAATTAATACTCCAGGTAACCTAAGCACA
 
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JMSF046A08+           ATAAGATTTCAGAATTTAAGCATTACCTTTCGCAAATTTTGTTGTATGTACACTGTTGAC
JMSF023D11+           ATAAGATTTCAGAATTTAAGCATTACCTTTCGCAAATTTTGTTGTATGTACACTGTTGAC
JMSF049L22+           ATAAGATTTCAGAATTTAAGCATTACCTTTCGCAAATTTTGTTGTATGTACACTGTTGAC
JMSF052D22+           ATAAGATTTCAGAATTTAAGCATTACCTTTCGCAAATTTTGTTGTATGTACACTGTTGAC
JMSF022J12+           ATAAGATTTCAGAATTTAAGCATTACCTTTCGCAAATTTTGTTGTATGTACACTGTTGAC
JMSF017A21+                         TTTAAGCATTACCTTTCGCAAATTTTGTTGTATGTACACTGTTGAC
JMSF043K11+           ATAAGATTTCAGAATTTAAGCATTACCTTTCGCAAATTTTGTTGTATGTACACTGTTGAC
                      ____________________________________________________________
consensus             ATAAGATTTCAGAATTTAAGCATTACCTTTCGCAAATTTTGTTGTATGTACACTGTTGAC
 
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JMSF046A08+           ACATATTTGCAGCCAAAACACAATTGCTATACTCTAATCTTACTCTGATTGTTCACAAAA
JMSF023D11+           ACATATTTGCAGCCAAAACACAATTGTTATACTCTAATCTTACTCTGATTGTTCACAAAA
JMSF049L22+           ACATATTTGCAGCCAAAACACAATTGTTATACTCTAATCTTACTCTGATTGCTCACAAAA
JMSF052D22+           ACATATTTGCAGCCAAAACACAATTGTTATACTCTAATCTTACTCTGATTGTTCACAAAA
JMSF022J12+           ACATATTTGCAGCCAAAACACAATTGTTATACTCTAATCTTACTCTGATTGTTCACAAAA
JMSF017A21+           ACATATTTGCAGCCAAAACACAATTGTTATACTCTAATCTTACTCTGATTGTTCACAAAA
JMSF043K11+           ACATATTTGCAGCCAAAACACAATTGTTATACTCTAATCTTACTCTGATTGTTCACAAAA
                      ____________________________________________________________
consensus             ACATATTTGCAGCCAAAACACAATTGTTATACTCTAATCTTACTCTGATTGTTCACAAAA
 
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JMSF046A08+           GACCTTCATATTAGGGTTCTCGAACACCGGTAGAAACCACAAATAGTACACTGACTCATC
JMSF023D11+           GACCTTCATATTAGGGTTCTCGAACACCGGTAGAAACCACAAATAGTACACTGACTCATC
JMSF049L22+           GACCTTCATATTAGGGTTCTCGAACACCGGTAGAAACCACAAATAGTACACCGACTCATC
JMSF052D22+           GACCTTCATATTAGGGTTCTCGAACACCGGTAGAAACCACAAATAGTACACTGACTCATC
JMSF022J12+           GACCTTCATATTAGGGTTCCCGAACACCGGTAGAAACCACAAATAGTACACTGACTCATC
JMSF017A21+           GACCTTCATATTAGGGTTCTCGAACACCGGTAGAAACCACAAATAGTACACTGACTCATC
JMSF043K11+           GACCTTCATATTAGGGTTCTCGAACACCGGTAGAAACCACAAATAGTACACTGACTCATC
                      ____________________________________________________________
consensus             GACCTTCATATTAGGGTTCTCGAACACCGGTAGAAACCACAAATAGTACACTGACTCATC
 
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JMSF046A08+           TCTAACCTATTACTCTAAAACACCAGAAATGAAGCTTGAACACTAGATCGAACAGAAATT
JMSF023D11+           TCTAACCTATTACTCTAAAACACCAGAAATGAAGCTTGAACACTAGATCGAACAGAAATT
JMSF049L22+           TCTAACCTATTACTCTAAAACACCAGAAATGAAGCTTGAACACTAGATCGAACAGAAATT
JMSF052D22+           TCTAACCTATTACTCTAAAACACCAGAAATGAAGCTTGAACACTAGATCGAACAGAAATT
JMSF022J12+           TCTAACCTATTACTCTAAAACACCAGAAATGAAGCTTGAACACTAGATCGAACAGAAATT
JMSF017A21+           TCTAACCTATTACTCTAAAACACCAGAAATGAAGCTTGAACACTAGATCGAACAGAAATT
JMSF043K11+           TCTAACCTATTACTCTAAAACACCAGAAATGAAGCTTGAACACTAGATCGAACAGAAATT
                      ____________________________________________________________
consensus             TCTAACCTATTACTCTAAAACACCAGAAATGAAGCTTGAACACTAGATCGAACAGAAATT
 
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JMSF046A08+           AGTAAGTGCGAACAGTGTATATGAGGTGGGTGTATAGAAGAAACAAATTTCTTCGGTCAG
JMSF023D11+           AGTAAGTGCGAACAGTGTATATGAGGTGGGTGTATAGAAGAAACAAATTTCTTCGGTCAG
JMSF049L22+           AGTAAGTGCGAACAGTGTATATGAGGTGGGTGTATAGAAGAAACAAATTTCTTCGGTCAG
JMSF052D22+           AGTAAGTGCGAACAGTGTATATGAGGTGGGTGTATAGAAGAAACAAATTTCTTCGGTCAG
JMSF022J12+           AGTAAGTGCGAACAGTGTATATGAGGTGGGTGTATAGAAGAAACAAATTTCTTCGGTCAG
JMSF017A21+           AGTAAGTGCGAACAGTGTATATGAGGTGGGTGTATAGAAGAAACAAATTTCTTCGGTCAG
JMSF043K11+           AGTAAGTGCGAACAGTGTATATGAGGTGGGTGTATAGAAGAAACAAATTTCTTCGGTCAG
                      ____________________________________________________________
consensus             AGTAAGTGCGAACAGTGTATATGAGGTGGGTGTATAGAAGAAACAAATTTCTTCGGTCAG
 
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JMSF046A08+           ACTCAAATTGTAAAACAGATATAGTTGAAAACCTAAATACTAGAGCTCCATGAACAAGAT
JMSF023D11+           ACTCAAATTGTAAAACAGATATAGTTGAAAACCTAAATACTAGAGCTCCATGAACAAGAT
JMSF049L22+           ACTCAAATTGTAAAACAGATATAGTTGAAAACCTAAATACTAGAGCTCCATGAACAAGAT
JMSF052D22+           ACTCAAATTGTAAAACAGATATAGTTGAAAACCTAAATACTAGAGCTCCATGAACAAGAT
JMSF022J12+           ACTCAAATTGTAAAACAGATATAGTTGAAAACCTAAATACTAGAGCTCCATGAACAAGAT
JMSF017A21+           ACTCAAATTGTAAAACAGATATAGTTGAAAACCTAAATACTAGAGCTCCATGAACAAGAT
JMSF043K11+           ACTCAAATTGTAAAACAGATATAGTTGAAAACCTAAATACTAGAGCTCCATGAACAAGAT
                      ____________________________________________________________
consensus             ACTCAAATTGTAAAACAGATATAGTTGAAAACCTAAATACTAGAGCTCCATGAACAAGAT
 
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JMSF046A08+           CGGAGTGTTTATGAGCTATCTTACATAGCGTTACACACAGAGAGAGCTAAGAGGTTAGAG
JMSF023D11+           CGGAGTGTTTATGAGCTATCTTACATAGCGTTACACACAGAGAGAGCTAAGAGGTTAGAG
JMSF049L22+           CGGAGTGTTTATGAGCTATCTTACATAGCGTTACACACAGAGAGAGCTAAGAGGTTAGAG
JMSF052D22+           CGGAGTGTTTATGAGCTATCTTACATAGCGTTACACACAGAGAGAGCTAAGAGGTTAGAG
JMSF022J12+           CGGAGTGTTTATGAGCTATCTTACATAGCGTTACACACAGAGAGAGCTAAGAGGTTAGAG
JMSF017A21+           CGGAGTGTTTATGAGCTATCTTACATAGCGTTACACACAGAGAGAGCTAAGAGGTTAGAG
JMSF043K11+           CGGAGTGTTTATGAGCTATCTTACATAGCGTTACACACAGAGAGAGCTAAGAGGTTAGAG
                      ____________________________________________________________
consensus             CGGAGTGTTTATGAGCTATCTTACATAGCGTTACACACAGAGAGAGCTAAGAGGTTAGAG
 
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JMSF046A08+           ATGAATGCGATCGGAGTGAGTGTTAGAGAGAGAGAGAGCTAAGAGATTGTGGTTGTTCT 
JMSF023D11+           ATGAATGCGATCGGAGTGAGTGTTAGAGAGAGAGAGAGCTAAGAGATTGTGGTTGTTCTC
JMSF049L22+           ATGAATGCGATCGGAGTGAGTGTTAGAGAGAGAGAGAGCTAAGAGATTGTGGTTGTTCTC
JMSF052D22+           ATGAATGCGATCGGAGTGAGTGTTAGAGAGAGAGAGAGCTAAGAGATTGTGGTTGTTCTC
JMSF022J12+           ATGAATGCGATCGGAGTGAGTGTTAGAGAGAGAGAGAGCTAAGAGATTGTGGTTGTTCTC
JMSF017A21+           ATGAATGCGATCGGAGTGAGTGTTAGAGAGAGAGAGAGCTAAGAGATTGTGGTTGTTCTC
JMSF043K11+           ATGAATGCGATCGGAGTGAGTGTTAGAGAGAGAGAGAGCTAAGAGATTGTGGTTGTTCTC
                      ____________________________________________________________
consensus             ATGAATGCGATCGGAGTGAGTGTTAGAGAGAGAGAGAGCTAAGAGATTGTGGTTGTTCTC