Contig 002413:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017I15Sequence642002413 (2)ref|XP_009766591.1|1e-107PREDICTED: ribosome biogenesis protein TSR3 homolog [Nicotiana sylvestris]
JMSF043G21Sequence763002413 (2)ref|XP_006464289.1|3e-60PREDICTED: ribosome biogenesis protein TSR3 homolog [Citrus sinensis]715021564ref|XP_006345858.1|5e-57PREDICTED: ribosome biogenesis protein TSR3 homolog [Solanum tuberosum]

Alignment

This contig is upended


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JMSF043G21+                            TGCTACCAACCATGGCACTGCAATTCTCATAGGGATCATTAAG
                      ____________________________________________________________
consensus                              TGCTACCAACCATGGCACTGCAATTCTCATAGGGATCATTAAG
 
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JMSF043G21+           TTAATAAACTTGTGAAGGACATGTAAAACTGAATCCTAGTTACATTTTACATAATAATAT
                      ____________________________________________________________
consensus             TTAATAAACTTGTGAAGGACATGTAAAACTGAATCCTAGTTACATTTTACATAATAATAT
 
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JMSF043G21+           TTACAACTCCAAAAATGGGAAACTTGCACTTTGAGAAAGTAATTGGAAAGCAAATAGACA
                      ____________________________________________________________
consensus             TTACAACTCCAAAAATGGGAAACTTGCACTTTGAGAAAGTAATTGGAAAGCAAATAGACA
 
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JMSF043G21+           AGAAACAACACAAAAAGGTATACTGAAATCAGTTATGATTTAACTCATTTAAGAGAGGAA
                      ____________________________________________________________
consensus             AGAAACAACACAAAAAGGTATACTGAAATCAGTTATGATTTAACTCATTTAAGAGAGGAA
 
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JMFN017I15+                                 AAAGACGAGGAGCAGCACAACGTAGCTTCGCAAAAGGT
JMSF043G21+           GCATATTAATCTAAGTTCATACAAAGACGAGGAGCAGCACAACGTAGCTTCGCAAAAGGT
                      ____________________________________________________________
consensus             GCATATTAATCTAAGTTCATACAAAGACGAGGAGCAGCACAACGTAGCTTCGCAAAAGGT
 
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JMFN017I15+           ACATCATCCAAGCGTGCCCATGAACAATCCACAACAGCTAATCCCTTCCGTTCAATTAAT
JMSF043G21+           ACATCATCCAAGCGTGCCCATGAACAATCCACAACAGCTAATCCCTTCCGTTCAATTAAT
                      ____________________________________________________________
consensus             ACATCATCCAAGCGTGCCCATGAACAATCCACAACAGCTAATCCCTTCCGTTCAATTAAT
 
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JMFN017I15+           GCATGATCTTCTCTGGAGATGCAATGTGATCCAGCAGGACTTAAAGCAATGCCACCAAAA
JMSF043G21+           GCATGATCTTCTCTGGAGATGCAATGTGATCCAGCAGGACTTAAAGCAATGCCACCAAAA
                      ____________________________________________________________
consensus             GCATGATCTTCTCTGGAGATGCAATGTGATCCAGCAGGACTTAAAGCAATGCCACCAAAA
 
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JMFN017I15+           CCACTGTTAACACGCAATTCTTTCAACAAACCAAATCTTGCAAGCTTGCGTCCAGTGCAT
JMSF043G21+           CCACTGTTAACACGCAATTCTTTCAACAAACCAAATCTTGCAAGCTTGCGTCCAGTGCAT
                      ____________________________________________________________
consensus             CCACTGTTAACACGCAATTCTTTCAACAAACCAAATCTTGCAAGCTTGCGTCCAGTGCAT
 
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JMFN017I15+           CTCTTTGAATCACATTGACCAAAATCCCACACAGCAAGCTGAACACTAGGGCGTTCTTTA
JMSF043G21+           CTCTTTGAATCACATTGACCAAAATCCCACACAGCAAGCTGAACACTAGGGCGTTCTTTA
                      ____________________________________________________________
consensus             CTCTTTGAATCACATTGACCAAAATCCCACACAGCAAGCTGAACACTAGGGCGTTCTTTA
 
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JMFN017I15+           TCCTCCTCTTCACCTGAATCAACGGGTAGTGACTCCTCATTACTGAGCGGATAAAGAGGT
JMSF043G21+           TCCTCCTCTTCACCTGAATCAACGGGTAGTGACTCCTCATTACTGAGCGGATAAAGAGGT
                      ____________________________________________________________
consensus             TCCTCCTCTTCACCTGAATCAACGGGTAGTGACTCCTCATTACTGAGCGGATAAAGAGGT
 
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JMFN017I15+           TGATGGCTGCGGCTGGTTTGGCCGCGATGGTTCTTGAATCGCCTCTGCTTATTGTTACCC
JMSF043G21+           TGATGGCTGCGGCTGGTTTGGCCGCGATGGTTCTTGAATCGCCTCTGCTTATTGTTACCC
                      ____________________________________________________________
consensus             TGATGGCTGCGGCTGGTTTGGCCGCGATGGTTCTTGAATCGCCTCTGCTTATTGTTACCC
 
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JMFN017I15+           ATCTGCTCGCAACACAGATGATTAGTGTGTATAATTTCAGAGCTCGGGGTTTTAC     
JMSF043G21+           ATCTGCTCGCAACACAGATGATTAGTGTGTATAATTTCAGAGCTCGGGGTTTTACCCAAG
                      ____________________________________________________________
consensus             ATCTGCTCGCAACACAGATGATTAGTGTGTATAATTTCAGAGCTCGGGGTTTTACCCAAG
 
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JMSF043G21+           GTTTCTTCGTGTGAATGTGTGATGAGGAGGGTTTGAGAACGAAAACAAATGTTTCGAATC
                      ____________________________________________________________
consensus             GTTTCTTCGTGTGAATGTGTGATGAGGAGGGTTTGAGAACGAAAACAAATGTTTCGAATC