Contig 002408:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS042F10Sequence625002408 (5)ref|XP_006366676.1|155PREDICTED: peroxisome biogenesis protein 6-like [Solanum tuberosum]
JMFS140D02Sequence617002408 (5)ref|XP_006366676.1|157PREDICTED: peroxisome biogenesis protein 6-like [Solanum tuberosum]
JMFS149D09Sequence604002408 (5)ref|XP_006366676.1|147PREDICTED: peroxisome biogenesis protein 6-like [Solanum tuberosum]
JMSF007B09Sequence222002408 (5)798004368 (4)ref|XP_009768919.1|3e-120PREDICTED: peroxisome biogenesis protein 6 [Nicotiana sylvestris]
JMSF043A07Sequence759002408 (5)ref|XP_006366676.1|208PREDICTED: peroxisome biogenesis protein 6-like [Solanum tuberosum]683004368 (4)ref|XP_009768919.1|2e-84PREDICTED: peroxisome biogenesis protein 6 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF043A07+                                CTAAGATGTTTTGCATACTTTGGCAACTGATCTAATGGT
                      ____________________________________________________________
consensus                                  CTAAGATGTTTTGCATACTTTGGCAACTGATCTAATGGT
 
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JMSF043A07+           TCAATTCCTAGACTAATGACAGCACTTTCATTTCCACTTTCCACCTTGATGTCAAACAAA
                      ____________________________________________________________
consensus             TCAATTCCTAGACTAATGACAGCACTTTCATTTCCACTTTCCACCTTGATGTCAAACAAA
 
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JMFS042F10+                                           CGATTTCAAACACGATATATGCAAATTA
JMFS149D09+                                                        GATATATGCAAATTA
JMFS140D02+                                           CGATTTCAAACACGATATATGCAAATTA
JMSF043A07+           GGAGACAAAGTCTCGTTATTTTGGTGAATAACCGATTTCAAACACGATATATGCAAATTA
                      ____________________________________________________________
consensus             GGAGACAAAGTCTCGTTATTTTGGTGAATAACCGATTTCAAACACGATATATGCAAATTA
 
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JMFS042F10+           AGGTTAAATGCCANAATTGGAGATAAATAGGCAGTTTCCTGATCTGTCTTGGGGGAATGA
JMFS149D09+           AGGTTAAATGCCAAAATTGGAGATAAATAGGCAGTTTCCTGATCTGTCTGGGGGGAATGA
JMFS140D02+           AGGTTAAATGCCAAAATTGGAGATAAATAGGCAGTTTCCTGATCTGTCTTGGGGGAATGA
JMSF043A07+           AGGTTAAATGCCAAAATTGGAGATAAATAGGCAGTTTCCTGATCTGTCTTGGGGGAATGA
                      ____________________________________________________________
consensus             AGGTTAAATGCCAAAATTGGAGATAAATAGGCAGTTTCCTGATCTGTCTTGGGGGAATGA
 
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JMFS042F10+           ACATCACCATAACAATGTGATGGCAAAACAAGCATTGCCTGGGGAGATTCTGAGAGAAGT
JMFS149D09+           ACATCACCATAACAATGTGATGGCAAAACAAGCATTGCCTGGGGAGATTCTGAGAGAAGT
JMFS140D02+           ACATCACCATAACAATGTGATGGCAAAACAAGCATTGCCTGGGGAGATTCTGAGAGAAGT
JMSF043A07+           ACATCACCATAACAATGTGATGGCAAAACAAGCATTGCCTGGGGAGATTCTGAGAGAAGT
                      ____________________________________________________________
consensus             ACATCACCATAACAATGTGATGGCAAAACAAGCATTGCCTGGGGAGATTCTGAGAGAAGT
 
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JMFS042F10+           GGTGTGCTACTGGGCAATGTCTTATCAGTATGGGGAGGATCCAGAACTATTACTTGCCCA
JMFS149D09+           GGTGTGCTACTGGGCAATGTCTTATCAGTATGGGGAGGATCCAGAACTATTACTTGCCCA
JMFS140D02+           GGTGTGCTACTGGGCAATGTCTTATCAGTATGGGGAGGATCCAGAACTATTACTTGCCCA
JMSF043A07+           GGTGTGCTACTGGGCAATGTCTTATCAGTATGGGGAGGATCCAGAACTATTACTTGCCCA
                      ____________________________________________________________
consensus             GGTGTGCTACTGGGCAATGTCTTATCAGTATGGGGAGGATCCAGAACTATTACTTGCCCA
 
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JMFS042F10+           ATTCTTAGCCCACTCATGTCAACATTCTTTATCAGTACCAGTGACCCGGAAGTTATGGAG
JMFS149D09+           ATTCTTAGCCCACTCATGTCAACATTCTTTATCAGTACCAGTGACCCGGAAGTTATGGAG
JMFS140D02+           ATTCTTAGCCCACTCATGTCAACATTCTTTATCAGTACCAGTGACCCGGAAGTTATGGAG
JMSF043A07+           ATTCTTAGCCCACTCATGTCAACATTCTTTATCAGTACCAGTGACCCGGAAGTTATGGAG
                      ____________________________________________________________
consensus             ATTCTTAGCCCACTCATGTCAACATTCTTTATCAGTACCAGTGACCCGGAAGTTATGGAG
 
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JMFS042F10+           AGTCTTTTGAGAGAAGAAGTGGAAAGGCCGACCATGGTGGAACAGTCAAGAGAAGACCCT
JMFS149D09+           AGTCTTTTGAGAGAAGAAGTGGAAAGGCCGACCATGGTGGAACAGTCAAGAGAAGACCCT
JMFS140D02+           AGTCTTTTGAGAGAAGAAGTGGAAAGGCCGACCATGGTGGAACAGTCAAGAGAAGACCCT
JMSF043A07+           AGTCTTTTGAGAGAAGAAGTGGAAAGGCCGACCATGGTGGAACAGTCAAGAGAAGACCCT
                      ____________________________________________________________
consensus             AGTCTTTTGAGAGAAGAAGTGGAAAGGCCGACCATGGTGGAACAGTCAAGAGAAGACCCT
 
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JMFS042F10+           GCCTTCGCGGGTGAAATTCCATTTAGGTCCTTGGGCAATTGGAGAATTCCTGCTCTTAAC
JMFS149D09+           GCCTTCGCGGGTGAAATTCCATTTAGGTCCTTGGGCAATTGGAGAATTCCTGCTCTTAAC
JMFS140D02+           GCCTTCGCGGGTGAAATTCCATTTAGGTCCTTGGGCAATTGGAGAATTCCTGCTCTTAAC
JMSF007B09+                                                            CTGCTCTTAAC
JMSF043A07+           GCCTTCGCGGGTGAAATTCCATTTAGGTCCTTGGGCAATTGGAGAATTCCTGCTCTTAAC
                      ____________________________________________________________
consensus             GCCTTCGCGGGTGAAATTCCATTTAGGTCCTTGGGCAATTGGAGAATTCCTGCTCTTAAC
 
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JMFS042F10+           TGTATACTAGAATTTGTCAGGGACGAAGAGGAAAGGGGCTTAATTGGCTCTGTGAGCTTA
JMFS149D09+           TGTATACTAGAATTTGTCAGGGACGAAGAGGAAAGGGGCTTAATTGGCTCTGTGAGCTTA
JMFS140D02+           TGTATACTAGAATTTGTCAGGGACGAAGAGGAAAGGGGCTTAATTGGCTCTGTGAGCTTA
JMSF007B09+           TGTATACTAGAATTTGTCAGGGACGAAGAGGAAAGGGGCTTAATTGGCTCTGTGAGCTTA
JMSF043A07+           TGTATACTAGAATTTGTCAGGGACGAAGAGGAAAGGGGCTTAATTGGCTCTGTGAGCTTA
                      ____________________________________________________________
consensus             TGTATACTAGAATTTGTCAGGGACGAAGAGGAAAGGGGCTTAATTGGCTCTGTGAGCTTA
 
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JMFS042F10+           TGTTCATCGTTGAGAATGGAGGTGAGGTGAGCTTTGGTGGAGGAAAGTATCAAAGGCTTT
JMFS149D09+           TGTTCATCGTTGAGAATGGAGGTGAGGTGAGCTTTGGTGGAGGAAAGTATCAAAGGCTTT
JMFS140D02+           TGTTCATCGTTGAGAATGGAGGTGAGGTGAGCTTTGGTGGAGGAAAGTATCAAAGGCTTT
JMSF007B09+           TGTTCATCGTTGAGAATGGAGGTGAGGTGAGCTTTGGTGGAGGAAAGTATCAAAGGCTTT
JMSF043A07+           TGTTCATCGTTGAGAATGGAGGTGAGGTGAGCTTTGGTGGAGGAAAGTATCAAAGGCTTT
                      ____________________________________________________________
consensus             TGTTCATCGTTGAGAATGGAGGTGAGGTGAGCTTTGGTGGAGGAAAGTATCAAAGGCTTT
 
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JMFS042F10+           CTTTTCCTCGCCATCCTCACCGTCGAAATCTATCAGCTTTGCTTCAATCGGCAGTTGAAC
JMFS149D09+           CTTTTCCTCGCCATCCTCACCGTCGAAATCTATCAGCTTTGCTTCAATCGGCAGTTGAAC
JMFS140D02+           CTTTTCCTCGCCATCCTCACCGTCGAAATCTATCAGCTTTGCTTCAATCGGCAGTTGAAC
JMSF007B09+           CTTTTCCTCGCCATCCTCACCGTCGAAATCTATCAGCTTTGCTTCAATCGGCAGTTGAAC
JMSF043A07+           CTTTTCCTCGCCATCCTCACCGTCGAAATCTATCAGCTTTGCTTCAATCGGCAGTTGAAC
                      ____________________________________________________________
consensus             CTTTTCCTCGCCATCCTCACCGTCGAAATCTATCAGCTTTGCTTCAATCGGCAGTTGAAC
 
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JMFS042F10+           ACGGCGGCGGTTGGTTGGTTGGCCGGAACTCTGAATTCAGCAAAATCAAGAAACGTC   
JMFS149D09+           ACGGCGGCGGTTGGTTGGTTGGCCGGAACTCTGAATTCAGCAAAATCAA           
JMFS140D02+           ACGGCGGCGGTTGGTTGGTTGGCCGGAACTCTGAATTCAGCAAAATCAA           
JMSF007B09+           ACGGCGGCGGTTGGTTGGTTGGCCGGAACTC                             
JMSF043A07+           ACGGCGGCGGTTGGTTGGTTGGCCGGAACTCTGAATTCAGCAAAATCAAGAAACGTCTTC
                      ____________________________________________________________
consensus             ACGGCGGCGGTTGGTTGGTTGGCCGGAACTCTGAATTCAGCAAAATCAAGAAACGTCTTC