Contig 002407:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN032L15Sequence611002407 (3)gb|KDP43450.1|2e-59hypothetical protein JCGZ_16737 [Jatropha curcas]
JMSF042N19Sequence771002407 (3)740002407 (3)gb|KDP43450.1|3e-58hypothetical protein JCGZ_16737 [Jatropha curcas]

Alignment

This contig is upended


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rJMSF042N19-                             ACTATAGTGTCTGTTCTTCAATACAAGGAGCATCTATATAT
                      ____________________________________________________________
consensus                                ACTATAGTGTCTGTTCTTCAATACAAGGAGCATCTATATAT
 
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JMFN032L15+                                    AACGCAAAAGACTACCACACTGGGCGGGATATACA
rJMSF042N19-          CATGCCTTGATGAAAGCAGTTGTCTAACGCAAAAGACTACCACACTGGGCGGGATATACA
                      ____________________________________________________________
consensus             CATGCCTTGATGAAAGCAGTTGTCTAACGCAAAAGACTACCACACTGGGCGGGATATACA
 
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JMFN032L15+           TAAAGGCTATCCTCGCCCATGACAGTGCCTTCGAGATTATCTTAGTTCTTAAGGACACAG
rJMSF042N19-          TAAAGGCTATCCTCGCCCATGACAGTGCCTTCGAGATTATCTTAGTTCTTAAGGACACAG
                      ____________________________________________________________
consensus             TAAAGGCTATCCTCGCCCATGACAGTGCCTTCGAGATTATCTTAGTTCTTAAGGACACAG
 
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JMFN032L15+           AAAAAACACGAAGCACAAACCGTTTTACAAAATAGATGTGACATTCATGGCGGCCCTATG
rJMSF042N19-          AAAAAACACGAAGCACAAACCGTTTTACAAAATAGATGTGACATTCATGGCGGCCCTATG
                      ____________________________________________________________
consensus             AAAAAACACGAAGCACAAACCGTTTTACAAAATAGATGTGACATTCATGGCGGCCCTATG
 
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JMFN032L15+           CCCCATCGGGCTGGAGGAAAGGATTGGCGATCTCATCTGTGCCGTCAGTTGGCGCCACAA
rJMSF042N19-          CCCCATCGGGCTGGAGGAAAGGATTGGCGATCTCATCTGTGCCGTCAGTTGGCGCCACAA
                      ____________________________________________________________
consensus             CCCCATCGGGCTGGAGGAAAGGATTGGCGATCTCATCTGTGCCGTCAGTTGGCGCCACAA
 
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JMFN032L15+           GCATAACTGCAGTCCCCCTACACACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTCT
rJMSF042N19-          GCATAACTGCAGTCCCCCTACACACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTCT
                      ____________________________________________________________
consensus             GCATAACTGCAGTCCCCCTACACACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTCT
 
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JMFN032L15+           TCAGAGGATCATCAGAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGCA
rJMSF042N19-          TCAGAGGATCATCAGAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGCA
                      ____________________________________________________________
consensus             TCAGAGGATCATCAGAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGCA
 
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JMFN032L15+           ATTGGTCATAGCCTTTTAGTGTTCCTACAACTTGTCTGCCACCAGTAAGCTTGACTTGCA
rJMSF042N19-          ATTGGTCATAGCCTTTTAGTGTTCCTACAACTTGTCTGCCACCAGTAAGCTTGACTTGCA
                      ____________________________________________________________
consensus             ATTGGTCATAGCCTTTTAGTGTTCCTACAACTTGTCTGCCACCAGTAAGCTTGACTTGCA
 
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JMFN032L15+           CACCCTTGTCAACGAACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGAC       
rJMSF042N19-          CACCCTTGTCAACGAACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACTGTAGGA
                      ____________________________________________________________
consensus             CACCCTTGTCAACGAACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACTGTAGGA
 
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rJMSF042N19-          AAGAAACAAACAACAGGCCTTTAATGTAAAGCAACAAACATAAATAATTGAAATTGTTTT
                      ____________________________________________________________
consensus             AAGAAACAAACAACAGGCCTTTAATGTAAAGCAACAAACATAAATAATTGAAATTGTTTT
 
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rJMSF042N19-          CTGCATCTATTTCTAGATTTTTGTTTCTGATCCCGACTAGTAGCTCATGCACAAATGCAC
                      ____________________________________________________________
consensus             CTGCATCTATTTCTAGATTTTTGTTTCTGATCCCGACTAGTAGCTCATGCACAAATGCAC
 
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rJMSF042N19-          AATCAGAAAGCACACGGGCATACATATATAAAGCTTAAAACCATTTTCATAATGGTTGTC
JMSF042N19+                    GCACACGGGCATACATATATAAAGCTTAAAACCATTTTCATAATGGTTGTC
                      ____________________________________________________________
consensus             AATCAGAAAGCACACGGGCATACATATATAAAGCTTAAAACCATTTTCATAATGGTTGTC
 
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rJMSF042N19-          ACAATTAACATCCTTTTGATTACAGTAAATTTG                           
JMSF042N19+           ACAATTAACATCCTTTTGATTACAGTAAATTTGATGCTTCTTTTCTTCTTTTAAGAAAAA
                      ____________________________________________________________
consensus             ACAATTAACATCCTTTTGATTACAGTAAATTTGATGCTTCTTTTCTTCTTTTAAGAAAAA
 
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JMSF042N19+           AAATATGCATTTGGAGATGCAATACAAGGGGTTAACAATACAATTAAATCATATTTAAAT
                      ____________________________________________________________
consensus             AAATATGCATTTGGAGATGCAATACAAGGGGTTAACAATACAATTAAATCATATTTAAAT
 
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JMSF042N19+           AACTAGAAGTCTAGAACTATAATATTTAGGACCTCAGAACATCTTTAGAGTCTGATACAT
                      ____________________________________________________________
consensus             AACTAGAAGTCTAGAACTATAATATTTAGGACCTCAGAACATCTTTAGAGTCTGATACAT
 
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JMSF042N19+           TTACTAAAAAGCGCATAAATAAAGCTCCTCAGTACTCAATCTCATATTTCTTTAAGCCAA
                      ____________________________________________________________
consensus             TTACTAAAAAGCGCATAAATAAAGCTCCTCAGTACTCAATCTCATATTTCTTTAAGCCAA
 
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JMSF042N19+           CTCAAATTATTCATATTGATTCAATGAGCAGTTTAGTTCAACTCATAAGGCCAATTTGAA
                      ____________________________________________________________
consensus             CTCAAATTATTCATATTGATTCAATGAGCAGTTTAGTTCAACTCATAAGGCCAATTTGAA
 
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JMSF042N19+           TAATCCTATGCAAACATTTGTGCCAATTGTAAAGAGTTTGGATAGGCTTATTAAAAATAA
                      ____________________________________________________________
consensus             TAATCCTATGCAAACATTTGTGCCAATTGTAAAGAGTTTGGATAGGCTTATTAAAAATAA
 
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JMSF042N19+           AAAATAAAAAATAATTATGCGTGGTGAAAGCTATGTCGAGCTTATTTCCATAACTAACAA
                      ____________________________________________________________
consensus             AAAATAAAAAATAATTATGCGTGGTGAAAGCTATGTCGAGCTTATTTCCATAACTAACAA
 
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JMSF042N19+           CTTTTGAGAAGTCCTTACCTTAAAAGCACTTATATAGTTATATTAAGCTGTTTATTCAAA
                      ____________________________________________________________
consensus             CTTTTGAGAAGTCCTTACCTTAAAAGCACTTATATAGTTATATTAAGCTGTTTATTCAAA
 
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JMSF042N19+           CAGACCTTCATTAGTTTCAAATCTTGCATTCATATTTCGACCTTTTATCTAAAATTATAT
                      ____________________________________________________________
consensus             CAGACCTTCATTAGTTTCAAATCTTGCATTCATATTTCGACCTTTTATCTAAAATTATAT
 
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JMSF042N19+           AAACGTGTATAAGAGAACAAAGAGTGCTACCATTCTGATCTTTTATTCGATCAAACACGA
                      ____________________________________________________________
consensus             AAACGTGTATAAGAGAACAAAGAGTGCTACCATTCTGATCTTTTATTCGATCAAACACGA
 
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JMSF042N19+           ATACGCTGTAATACTCCCCAGTTAAACAGCAAAACAACACCCTTTCGGAGCTCAAAAGCT
                      ____________________________________________________________
consensus             ATACGCTGTAATACTCCCCAGTTAAACAGCAAAACAACACCCTTTCGGAGCTCAAAAGCT
 
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JMSF042N19+           GTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTCTCTCTTCTTTCCCGCTAAGTCTTGCC
                      ____________________________________________________________
consensus             GTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTCTCTCTTCTTTCCCGCTAAGTCTTGCC