Contig 002405:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010F10Sequence570002405 (2)ref|XP_009625584.1|4e-86PREDICTED: histone deacetylase 8 isoform X2 [Nicotiana tomentosiformis]753010063 (2)ref|XP_009625583.1|1e-76PREDICTED: histone deacetylase 8 isoform X1 [Nicotiana tomentosiformis]
JMSF042K13Sequence821002405 (2)ref|XP_009625584.1|6e-141PREDICTED: histone deacetylase 8 isoform X2 [Nicotiana tomentosiformis]838010063 (2)ref|XP_009804418.1|1e-61PREDICTED: histone deacetylase 8 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K13+                              GGGCAAAGGGACATTCAAATTATACCCGAATCCTTTACNTT
                      ____________________________________________________________
consensus                                GGGCAAAGGGACATTCAAATTATACCCGAATCCTTTACNTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K13+           CGCCAAGCTCATCCACAGCTCCATTNTGAGGATGCGAGGGGCCCCAAGAACCATGGTTCA
                      ____________________________________________________________
consensus             CGCCAAGCTCATCCACAGCTCCATTNTGAGGATGCGAGGGGCCCCAAGAACCATGGTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K13+           TGTGCAGGGAGATGGTGAGAACTCTGTCAGAGCGATAAAACCCTTCTGCAGTGCCATTCC
                      ____________________________________________________________
consensus             TGTGCAGGGAGATGGTGAGAACTCTGTCAGAGCGATAAAACCCTTCTGCAGTGCCATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042K13+           CGTAATGGACATCAATGTCAATAACCGTGACCTTTTCATGTCCAGAATCCAGAGCTAGTT
                      ____________________________________________________________
consensus             CGTAATGGACATCAATGTCAATAACCGTGACCTTTTCATGTCCAGAATCCAGAGCTAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+                             TGTTGAGGAAGCAATAGCCATCAGCTCGAGCAGGCTGGGCGT
JMSF042K13+           GCACTGCGAGGCCAGCATTGTTGAGGAAGCAATAGCCATCAGCTCGAGCAGGCTGGGCGT
                      ____________________________________________________________
consensus             GCACTGCGAGGCCAGCATTGTTGAGGAAGCAATAGCCATCAGCTCGAGCAGGCTGGGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+           GATGGCCAGGCGGCCTGACCAACGCGTAGGCAATGCTCCCATTTCCATCGAGAATGTGTT
JMSF042K13+           GATGGCCAGGCGGCCTGACCAACGCGTAGGCAATGCTCCCATTTCCATCGAGAATGTGTT
                      ____________________________________________________________
consensus             GATGGCCAGGCGGCCTGACCAACGCGTAGGCAATGCTCCCATTTCCATCGAGAATGTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+           TCATTGCTGATAATGTTGTGCCAGCCGCCAGAAGTGCAGCATCCCATGAACCTGGATTTA
JMSF042K13+           TCATTGCTGATAATGTTGTGCCAGCCGCCAGAAGTGCAGCATCCCATGAACCTGGATTTA
                      ____________________________________________________________
consensus             TCATTGCTGATAATGTTGTGCCAGCCGCCAGAAGTGCAGCATCCCATGAACCTGGATTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+           AGAATGTCCCTGAACAGATCTCTTTCCCGCCACTTCTGTCTGCTTCAATCAGCTCATTTA
JMSF042K13+           AGAATGTCCCTGAACAGATCTCTTTCCCGCCACTTCTGTCTGCTTCAATCAGCTCATTTA
                      ____________________________________________________________
consensus             AGAATGTCCCTGAACAGATCTCTTTCCCGCCACTTCTGTCTGCTTCAATCAGCTCATTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+           CATACTCTTGAGTGTGGAAAGAGAGCAATTCGGAGAGGAGAGCAGGTCTGCCATGGTGCC
JMSF042K13+           CATACTCTTGAGTGTGGAAAGAGAGCAATTCGGAGAGGAGAGCAGGTCTGCCATGGTGCC
                      ____________________________________________________________
consensus             CATACTCTTGAGTGTGGAAAGAGAGCAATTCGGAGAGGAGAGCAGGTCTGCCATGGTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+           AAGAAATGAAGGGAGAAATTGGGCCTCTTTTGAGGATGGAGACCATATTCCTCACTCTAT
JMSF042K13+           AAGAAATGAAGGGAGAAATTGGGCCTCTTTTGAGGATGGAGACCATATTCCTCACTCTAT
                      ____________________________________________________________
consensus             AAGAAATGAAGGGAGAAATTGGGCCTCTTTTGAGGATGGAGACCATATTCCTCACTCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+           CGGCATTCTCCGGGTGATTCTCCAGCACATCCAGAAACCCCGGGTCAATCCCGGTGTCAA
JMSF042K13+           CGGCATTCTCCGGGTGATTCTCCAGCACATCCAGAAACCCCGGGTCAATCCCGGTGTCAA
                      ____________________________________________________________
consensus             CGGCATTCTCCGGGTGATTCTCCAGCACATCCAGAAACCCCGGGTCAATCCCGGTGTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+           ACATGCCTTTTCCGGCGTCGTGGCTCAGCATGCCCTCGTGCCAGAATACGTGGATGAGAT
JMSF042K13+           ACATGCCTTTTCCGGCGTCGTGGCTCAGCATGCCCTCGTGCCAGAATACGTGGATGAGAT
                      ____________________________________________________________
consensus             ACATGCCTTTTCCGGCGTCGTGGCTCAGCATGCCCTCGTGCCAGAATACGTGGATGAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+           CTCCGGCCGCCGGAGAAGAAGGCGTAGCTTTAGCTGAAGCCATGGGAGAGTATCCAATTT
JMSF042K13+           CTCCGGCCGCCGGAGAAGAAGGCGTAGCTTTAGCTGAAGCCATGGGAGAGTATCCAATTT
                      ____________________________________________________________
consensus             CTCCGGCCGCCGGAGAAGAAGGCGTAGCTTTAGCTGAAGCCATGGGAGAGTATCCAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010F10+           CAGTTCTGCTATTGACTTCACTTCTCTTCCCGTTAGATACTGAAGACT            
JMSF042K13+           CAGTTCTGCTATTGACTTCACTTCTCTTCCCGTTAGATACTGAAGACTGAAGAGTATCTC
                      ____________________________________________________________
consensus             CAGTTCTGCTATTGACTTCACTTCTCTTCCCGTTAGATACTGAAGACTGAAGAGTATCTC