| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004M18 | Sequence | 592 | 002400 (9) | ref|XP_009773747.1| | 1e-15 | PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris] | 674 | 001030 (6) | ref|XP_006367068.1| | 2e-25 | PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum] |
| JMFF026L18 | Sequence | 464 | 002400 (9) | ref|XP_006344890.1| | 175 | PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum] | 695 | 012700 (4) | ref|XP_006344890.1| | 308 | PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum] |
| JMFF037B11 | Sequence | 587 | 002400 (9) | ref|XP_009773747.1| | 7e-16 | PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris] | 720 | 001030 (6) | ref|XP_009773747.1| | 4e-25 | PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris] |
| JMFS030C05 | Sequence | 618 | 002400 (9) | ||||||||
| JMFS155B02 | Sequence | 607 | 002400 (9) | ||||||||
| JMSF008G14 | Sequence | 451 | 002400 (9) | ref|XP_006344890.1| | 155 | PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum] | 743 | 001030 (6) | ref|XP_006367068.1| | 3e-26 | PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum] |
| JMSF041L17 | Sequence | 726 | 002400 (9) | ref|XP_006344890.1| | 205 | PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum] | 732 | 001030 (6) | ref|XP_009773747.1| | 3e-26 | PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris] |
| JMSF047I09 | Sequence | 400 | 002400 (9) | 759 | 001030 (6) | ref|XP_006367068.1| | 1e-36 | PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum] | |||
| JMSF048D22 | Sequence | 611 | 002400 (9) | 758 | 001030 (6) | ref|XP_006367068.1| | 7e-42 | PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum] | |||
This contig is upended
. : . : . : . : . : . :
JMFF004M18+ ACCTTTGGGAACACAGACAACGACTCC-GAAGCAGCCATGAAATTCTTGCTG
JMFF037B11+ GGGAACACAGACAACGACTCCGGAAGCAGCCATGAAATTCTTGCTG
____________________________________________________________
consensus ACCTTTGGGAACACAGACAACGACTCCGGAAGCAGCCATGAAATTCTTGCTG
. : . : . : . : . : . :
JMFF004M18+ AACCTATCGTCTTCGTCTTGTGATAAATCTGAGTCTGACCGCTCTGGCTCGAAGACATAG
JMFF037B11+ AACCTATCGTCTTCGTCTTGTGATAAATCTGAGTCTGACCGCTCTGGCTCGAAGACATAG
____________________________________________________________
consensus AACCTATCGTCTTCGTCTTGTGATAAATCTGAGTCTGACCGCTCTGGCTCGAAGACATAG
. : . : . : . : . : . :
JMFF004M18+ GAAGAGTCCCCCCCGATGTCGGGAAAAGACGAGTGAACCCCATCGGTGTAGCGAGGGCTG
JMFF037B11+ GAAGAGTCCCCCCCGATGTCGGGAAAAGACGAGTGAACCCCATCGGTGTAGCGAGGGCTG
____________________________________________________________
consensus GAAGAGTCCCCCCCGATGTCGGGAAAAGACGAGTGAACCCCATCGGTGTAGCGAGGGCTG
. : . : . : . : . : . :
JMFF004M18+ TCTGAATCCAACACGTCGCTCTTACTCGGGCTTGTACCTTCCAGCTTAACAGGCAGGGCT
JMFF037B11+ TCTGAATCCAACACGTCGCTCTTACTCGGGCTTGTACCTTCCAGCTTAACAGGCAGGGCT
____________________________________________________________
consensus TCTGAATCCAACACGTCGCTCTTACTCGGGCTTGTACCTTCCAGCTTAACAGGCAGGGCT
. : . : . : . : . : . :
JMFF004M18+ GGGGATGATGCTGCAACTGAATCAGCCATATGGTCTTTCGACAGTGCTTCCAAAGGGTGT
JMFF037B11+ GGGGATGATGCTGCAACTGAATCAGCCATATGGTCTTTCGACAGTGCTTCCAAAGGGTGT
____________________________________________________________
consensus GGGGATGATGCTGCAACTGAATCAGCCATATGGTCTTTCGACAGTGCTTCCAAAGGGTGT
. : . : . : . : . : . :
JMFF004M18+ TGGATATCATCTCGAAACTTTAACGTTTCCTTTTCTTTACCCTTCACAACTAGCTTGTCC
JMFF037B11+ TGGATATCATCTCGAAACTTTAACGTTTCCTTTTCTTTACCCTTCACAACTAGCTTGTCC
____________________________________________________________
consensus TGGATATCATCTCGAAACTTTAACGTTTCCTTTTCTTTACCCTTCACAACTAGCTTGTCC
. : . : . : . : . : . :
JMFF004M18+ GTGACGCGAAGAAAGTATTCGTCGGAGTTCTCACATTCATTCTCATCTTGATCATATTTT
JMFF037B11+ GTGACGCGAAGAAAGTATTCGTCGGAGTTCTCACATTCATTCTCATCTTGATCATATTTT
____________________________________________________________
consensus GTGACGCGAAGAAAGTATTCGTCGGAGTTCTCACATTCATTCTCATCTTGATCATATTTT
. : . : . : . : . : . :
JMFF004M18+ CGAAAGAATCCCCCTTTGCCATCACAGAAGCTAACCATGGAACTTGACCCTGAGCCATGA
JMFF037B11+ CGAAAGAATCCCCCTTTGCCATCACAGAAGCTAACCATGGAACTTGACCCTGAGCCATGA
JMFS155B02+ CCATGA
JMFS030C05+ AGAAGCTAACCATGGAACTTGACCCTGAGCCATGA
JMSF048D22+ GA
____________________________________________________________
consensus CGAAAGAATCCCCCTTTGCCATCACAGAAGCTAACCATGGAACTTGACCCTGAGCCATGA
. : . : . : . : . : . :
JMFF004M18+ AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
JMFF037B11+ AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
JMFS155B02+ AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
JMFS030C05+ AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
JMSF048D22+ AAAGAAGGTGAAAAGCCANGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
____________________________________________________________
consensus AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
. : . : . : . : . : . :
JMFF004M18+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
JMFF037B11+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
JMFS155B02+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
JMFS030C05+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
JMSF048D22+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
____________________________________________________________
consensus TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
. : . : . : . : . : . :
JMFF004M18+ A
JMFF037B11+ A
JMFS155B02+ AACAAACCGCGACCCGCTTCCATAGCTGTGAAGACAAGATCACGAAGGGTAATTACAAAA
JMFS030C05+ AACAAACCGCGACCCGCTTCCATAGCTGTGAAGACAAGATCACGAAGGGTAATTACAAAA
JMSF048D22+ AACAAACCGCGACCCGCTTCCATAGCTGTGAAGACANGATCNCGAAGGGTAATTACAAAA
____________________________________________________________
consensus AACAAACCGCGACCCGCTTCCATAGCTGTGAAGACAAGATCACGAAGGGTAATTACAAAA
. : . : . : . : . : . :
JMFS155B02+ GAAGGGTTATCAGGCAGCCGCCGTAGCTAGACTTTTTACGGTAATCTTGATCCCAACCCG
JMFS030C05+ GAAGGGTTATCAGGCAGCCGCCGTAGCTAGACTTTTTACGGTAATCTTGATCCCAACCCG
JMSF047I09+ CCGTAGCTAGACTTTTTACGGTAATCTTGATCCCANCCCG
JMSF048D22+ GAAGGGTTATCNNGCANCCNCCGTAGCTAGACTTTTTACGGTAATCTTGATCCCANCCCG
____________________________________________________________
consensus GAAGGGTTATCAGGCAGCCGCCGTAGCTAGACTTTTTACGGTAATCTTGATCCCAACCCG
. : . : . : . : . : . :
JMFS155B02+ GAGCGCCTCTCCTTCCCTTACCCCTTAACCCGGTTTGCATACACAAATAAACGGAAAAAT
JMFS030C05+ GAGCGCCTCTCCTTCCCTTACCCCTTAACCCGGTTTGCATACACAAATAAACGGAAAAAT
JMSF047I09+ GAGCGCCTCTCNTTCCCTTACCCCTTAACCCGGTTTGCATACACANATAAACGGAAAAAT
JMSF048D22+ GAGCGCCTCTCNTTCCCTTACCCCTTAACCCGGTTTGCATACACANATAAACGGAAAAAT
____________________________________________________________
consensus GAGCGCCTCTCCTTCCCTTACCCCTTAACCCGGTTTGCATACACAAATAAACGGAAAAAT
. : . : . : . : . : . :
JMFS155B02+ AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCAGTGATGTG
JMFS030C05+ AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCAGTGATGTG
JMSF047I09+ AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCANTGATGTG
JMSF048D22+ AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCANTGATGTG
____________________________________________________________
consensus AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCAGTGATGTG
. : . : . : . : . : . :
JMFS155B02+ GGAAGTGTGAGAACACCTGCTGATCACCACCGCCATCATAACCCCAATCTCTTCTTTCAC
JMFS030C05+ GGAAGTGTGAGAACACCTGCTGATCACCACCGCCATCATAACCCCAATCTCTTCTTTCAC
JMSF047I09+ GGAAGTGTGAGAACACCNGCTGATCACCNCCNCCATCATAACCCCANTCTCTTNTTTCAC
JMSF048D22+ GGAAGTGTGAGAACACCNGCTGATCNCCNCCNCCATCATAACCCCANTCTCTTNTTTCAC
JMSF041L17+ TTTCAC
____________________________________________________________
consensus GGAAGTGTGAGAACACCTGCTGATCACCACCGCCATCATAACCCCAATCTCTTCTTTCAC
. : . : . : . : . : . :
JMFS155B02+ AATTCTATGTATGTATGATTGTGTATATACACAGAGAAGTAGAGAGGGAATCTCTGGTAA
JMFS030C05+ AATTCTATGTATGTATGATTGTGTATATACACAGAGAAGTAGAGAGGGAATCTCTGGTAA
JMSF047I09+ ANTTCTATGTATGTATGATTGTGTATATACACANAGAAGTAGAGAGGGAATCTCTGGTAA
JMSF048D22+ ANTTCTATGTATGTATGATTGTGTATATACACANAGAAGTAGAGAGGGAATCTCTGGTAA
JMSF041L17+ ANTTCTATGTATGTATGATTGTGTATATACACANAGAAGTAGAGAGGGAATCTCTGGTAA
____________________________________________________________
consensus AATTCTATGTATGTATGATTGTGTATATACACAGAGAAGTAGAGAGGGAATCTCTGGTAA
. : . : . : . : . : . :
JMFS155B02+ TAAGGATATGGGTATTTGGAAGAGAAGACGACAATGGAGAGACAGAAATGTGAAATGAGA
JMFS030C05+ TAAGGATATGGGTATTTGGAAGAGAAGACGACAATGGAGAGACAGAAATGTGAAATGAGA
JMSF047I09+ TAAGGATATGGGTATTTGGAAGAGAAGACGACANTGGAGAGACAGAAATGTGAAATGAGA
JMSF048D22+ TAAGGATATGGGTATTTGGAAGAGAAGACGACANTGGAGAGACAGAAATGTGAAATGAGA
JMSF041L17+ TAAGGATATGGGTATTTGGAAGAGAAGACGACANTGGAGAGACANAAATGTGAAATGAGA
____________________________________________________________
consensus TAAGGATATGGGTATTTGGAAGAGAAGACGACAATGGAGAGACAGAAATGTGAAATGAGA
. : . : . : . : . : . :
JMFS155B02+ TTCTGCCTTTGAAAGCAGAGAGAGAGAGAGAGAGAGAGAGA
JMFS030C05+ TTCTGCCTTTGAAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGA
JMSF047I09+ TTCTGCCTTTGAAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTGGCGAAG
JMSF048D22+ TTCTNCCTTTGAAAGCANAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTGGCGAAG
JMSF041L17+ TTCTGCCTNTGAAAGCANAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTGGCGAAGTG
____________________________________________________________
consensus TTCTGCCTTTGAAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTGGCGAAGTG
. : . : . : . : . : . :
JMSF041L17+ GAGAGGAGACTTTGAAATCGAAGATCAAGAGCACATCAAGCACAATCGCCTGCATGGTGT
____________________________________________________________
consensus GAGAGGAGACTTTGAAATCGAAGATCAAGAGCACATCAAGCACAATCGCCTGCATGGTGT
. : . : . : . : . : . :
JMFF026L18+ CTCACGTACCTACTGAAATTGGGGTTTCTGACAACGACGAAGTAGAGCGTGAAGA
JMSF008G14+ TTTCTGACAACGACGAAGTAGAGCGTGAAGA
JMSF041L17+ TGAACCTCACGTACCTACTGAAATTGGGGTTTCTGACAACGACGAAGTAGAGCGTGAAGA
____________________________________________________________
consensus TGAACCTCACGTACCTACTGAAATTGGGGTTTCTGACAACGACGAAGTAGAGCGTGAAGA
. : . : . : . : . : . :
JMFF026L18+ ACACCAGAATCCCATTGAGCGGGAAGCTCTTGAAGACCCGTATAGCCGGAACTAAGGGCT
JMSF008G14+ NCACCAGAATCCCATTGAGCGGGAAGCTCTTGAAGACCCGTATAGCCGGAACTAAGGGCT
JMSF041L17+ ACACCAGAATCCCATTGAGCGGGAAGCTCTTGAAGACCCGTATAGCCGGAACTAAGGGCT
____________________________________________________________
consensus ACACCAGAATCCCATTGAGCGGGAAGCTCTTGAAGACCCGTATAGCCGGAACTAAGGGCT
. : . : . : . : . : . :
JMFF026L18+ GAATCAGAGCTTGGACCGGAGTGAACTGCGTGATGACGTATTTGCCGTACTGAACGCCGT
JMSF008G14+ GAATCAGAGCTTGGACCGGAGTGAACTGCGTGATGACGTATTTGCCGTACTGAACGCCGT
JMSF041L17+ GAATCAGAGCTTGGACCGGAGTGAACTGCGTGATGACGTATTTGCCGTACTGAACGCCGT
____________________________________________________________
consensus GAATCAGAGCTTGGACCGGAGTGAACTGCGTGATGACGTATTTGCCGTACTGAACGCCGT
. : . : . : . : . : . :
JMFF026L18+ CGAAGAAAGGGTAGAAGTAAGCAATGGCAGAGATTAAACGGTCAGGGCCATCCGCTGTGC
JMSF008G14+ CGAAGAAAGGGTAGAAGTAAGCAATGGCAGAGATTAAACGGTCAGGGCCATCCGCTGTGC
JMSF041L17+ CGAAGAAAGGGTAGAAGTAAGCAATGGCAGAGATTAAACGGTCAGGGCCATCCGCTGTGC
____________________________________________________________
consensus CGAAGAAAGGGTAGAAGTAAGCAATGGCAGAGATTAAACGGTCAGGGCCATCCGCTGTGC
. : . : . : . : . : . :
JMFF026L18+ TGCTGCCCTTTGATTGAACGGTGACTAGGAGGCGTCTGGGAGCTCCGGCGGGTTTTCTTA
JMSF008G14+ TGCTGCCCTTTGATTGAACGGTGACTAGGAGGCGTCTGGGAGCTCCGGCGGGTTTTCTTA
JMSF041L17+ TGCTGCCCTTTGATTGAACGGTGACTAGGAGGCGTCTGGGAGCTCCGGCGGGTTTTCTTA
____________________________________________________________
consensus TGCTGCCCTTTGATTGAACGGTGACTAGGAGGCGTCTGGGAGCTCCGGCGGGTTTTCTTA
. : . : . : . : . : . :
JMFF026L18+ GCAGAGACGGTGAGTGTTGCAGGTGGAGGGGAGTTATGCTGGGTCTGTGAGAGAAGAGTT
JMSF008G14+ GCAGAGACGGTGAGTGTTGCAGGTGGAGGGGAGTTATGCTGGGTCTGTGAGAGAAGAGTT
JMSF041L17+ GCAGAGACGGTGAGTGTTGCAGGTGGAGGGGAGTTATGCTGGGTCTGTGAGAGAAGAGTT
____________________________________________________________
consensus GCAGAGACGGTGAGTGTTGCAGGTGGAGGGGAGTTATGCTGGGTCTGTGAGAGAAGAGTT
. : . : . : . : . : . :
JMFF026L18+ GGGGTGTAGATAAAAGATTGGATATGGCCATCCCGTGAATCGATTCCAGAAGGATGACCA
JMSF008G14+ GGGGTGTAGATAAAAGATTGGATATGGCCATCCCGTGAATCGATTCCAGAAGGATGACCA
JMSF041L17+ GGGGTGTAGATAAAAGATTGGATATGGCCATCCCGTGAATCGATTCCAGAAGGATGACCA
____________________________________________________________
consensus GGGGTGTAGATAAAAGATTGGATATGGCCATCCCGTGAATCGATTCCAGAAGGATGACCA
. : . : . : . : . : . :
JMFF026L18+ AGAAAATCTTGAGAGAGAAGAGAAAAAGATGCGATCTTTGGGGGCTTCC
JMSF008G14+ AGAAAATCTTGAGAGAGAAGAGAAAAAGATGCGATCTTTGGGGGCTTCCACTTGTTGAT
JMSF041L17+ AGAAAATCTTGAGAGAGAAGAGAAAAAGATGCGATCTTTGGGGGCTTCCACTTGTTGATC
____________________________________________________________
consensus AGAAAATCTTGAGAGAGAAGAGAAAAAGATGCGATCTTTGGGGGCTTCCACTTGTTGATC