Contig 002399:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003M03Sequence382002399 (2)ref|XP_011094438.1|7e-22PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 716001454 (2)ref|XP_009792061.1|7e-112PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400
JMSF041J16Sequence804002399 (2)ref|XP_011094438.1|1e-70PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 631001454 (2)ref|XP_009792061.1|8e-84PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400

Alignment

This contig is upended


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JMSF041J16+ TGGGAGTTGACGGTAACGAGCTTG
                      ____________________________________________________________
consensus TGGGAGTTGACGGTAACGAGCTTG
 
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JMSF041J16+ GATTCGACGGAACCGTNTGAGAAGACGAGGAATTTAACGGCCGTCCGGCGTGTGAACACC
                      ____________________________________________________________
consensus GATTCGACGGAACCGTNTGAGAAGACGAGGAATTTAACGGCCGTCCGGCGTGTGAACACC
 
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JMSF041J16+ GCAGCTGAGGGGACCCACACAGCCCTTCGTTTCCGGCGAAGCTATTCCCGCCGAAGCGTT
                      ____________________________________________________________
consensus GCAGCTGAGGGGACCCACACAGCCCTTCGTTTCCGGCGAAGCTATTCCCGCCGAAGCGTT
 
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JMSF041J16+ TGTATAAACTCCGAGGAAGCATCCCGTACAGCTCATTGTTAGATAAATTCAATTCCGTGA
                      ____________________________________________________________
consensus TGTATAAACTCCGAGGAAGCATCCCGTACAGCTCATTGTTAGATAAATTCAATTCCGTGA
 
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JMSF041J16+ GTTGCTGGAGAGAATTCAAGGATTCCGGGATAATTCCGGAGAGTTCATTGTTCTGTAACC
                      ____________________________________________________________
consensus GTTGCTGGAGAGAATTCAAGGATTCCGGGATAATTCCGGAGAGTTCATTGTTCTGTAACC
 
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JMSF041J16+ GTAGAGTGAGAAGGCGTGAAATGTTCGAGATTTTCGCCGGGATTGAGCCTTTAAGGTTGT
                      ____________________________________________________________
consensus GTAGAGTGAGAAGGCGTGAAATGTTCGAGATTTTCGCCGGGATTGAGCCTTTAAGGTTGT
 
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JMSF041J16+ TGTTGGAGAGGTCGAGGCGGAGGAGGCGGCGGAGAGAGGAGATTTCCGCCGGTATTTCAC
                      ____________________________________________________________
consensus TGTTGGAGAGGTCGAGGCGGAGGAGGCGGCGGAGAGAGGAGATTTCCGCCGGTATTTCAC
 
. : . : . : . : . : . :
JMSF003M03+ GGAGAGGTAAATGAGCNTGANGTTGAGACAGTGGGTGATGGNAG
JMSF041J16+ CGGAAAAGTCATTTCCGGAGAGGTAAATGAGCTTGAGGTTGAGACAGTGGGTGATGGGAG
                      ____________________________________________________________
consensus CGGAAAAGTCATTTCCGGAGAGGTAAATGAGCTTGAGGTTGAGACAGTGGGTGATGGGAG
 
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JMSF003M03+ CGAGAGAACCGTTGAGGCGGTTATCACGGAGGTCGAGGAGGCGGAGCTGGTCGAGGGAAG
JMSF041J16+ CGAGAGAACCGTTGAGGCGGTTATCACGGAGGTCGAGGAGGCTGAGCTGGTCGAGGGAAG
                      ____________________________________________________________
consensus CGAGAGAACCGTTGAGGCGGTTATCACGGAGGTCGAGGAGGCTGAGCTGGTCGAGGGAAG
 
. : . : . : . : . : . :
JMSF003M03+ CGAGGGCGTCAATGGGGCCGCGGAGGTTGAGGGAAGGGAGGGACAGGGCGGTGACGCGGC
JMSF041J16+ CGAGGGCGTCAATGGGGCCGCGGAGGTTGAGGGAAGGGAGGGACAGGGCGGTGACGCGGC
                      ____________________________________________________________
consensus CGAGGGCGTCAATGGGGCCGCGGAGGTTGAGGGAAGGGAGGGACAGGGCGGTGACGCGGC
 
. : . : . : . : . : . :
JMSF003M03+ CGTTGGTGCAGTTTACGCCGACCCAATTGGCGGAGCAGGCGGTGGCGTTGAATGTAAGTG
JMSF041J16+ CGTTGGTGCAGTTTACGCCGACCCAATTGGCGGAGCAGGCGGTGGCGTTGAATGTAAGTG
                      ____________________________________________________________
consensus CGTTGGTGCAGTTTACGCCGACCCAATTGGCGGAGCAGGCGGTGGCGTTGAATGTAAGTG
 
. : . : . : . : . : . :
JMSF003M03+ TCCAGTTGGAGAGGAGAGTGGCGTGGGGGTCGGTTTGGGAGCGGAAGAGGGCAAGGACGG
JMSF041J16+ TCCAGTTGGAGAGGAGAGTGGCGTGGGGGTCGGTTTGGGAGCGGAAGAGGGCAAGGACGG
                      ____________________________________________________________
consensus TCCAGTTGGAGAGGAGAGTGGCGTGGGGGTCGGTTTGGGAGCGGAAGAGGGCAAGGACGG
 
. : . : . : . : . : . :
JMSF003M03+ CGGTGTCATTTGCCGCGGCGGCGAAGGTGGCGGTGGAGCACCAGCAAAAGAAGAAGAGGA
JMSF041J16+ CGGTGTCATTTGCCGCGGCGGCGAAGGTGGCGGTGGAGCACCAGCAAAAGAAGAAGAGGA
                      ____________________________________________________________
consensus CGGTGTCATTTGCCGCGGCGGCGAAGGTGGCGGTGGAGCACCAGCAAAAGAAGAAGAGGA
 
. : . : . : . : . : . :
JMSF003M03+ TAAGAGACAACAACAAACGTTCCATTGGTTTAA
JMSF041J16+ TAAGAGACAACAACAAACGTTCCATTGGTTTAATGCATGACGAGCGGGAAGTCTGATTCC
                      ____________________________________________________________
consensus TAAGAGACAACAACAAACGTTCCATTGGTTTAATGCATGACGAGCGGGAAGTCTGATTCC