Contig 002396:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS035C02Sequence627002396 (7)
JMFS118A07Sequence640002396 (7)
JMSF002O23Sequence348002396 (7)707011747 (9)gb|KCW59892.1|4e-31hypothetical protein EUGRSUZ_H026192, partial [Eucalyptus grandis]
JMSF011N11Sequence239002396 (7)768008610 (3)gb|KCW59892.1|3e-31hypothetical protein EUGRSUZ_H026192, partial [Eucalyptus grandis]
JMSF016K14Sequence200002396 (7)776011747 (9)ref|XP_009607641.1|1e-34PREDICTED: exosome complex exonuclease RRP44 [Nicotiana tomentosiformis]
JMSF040B08Sequence667002396 (7)778008610 (3)gb|KCW59892.1|3e-31hypothetical protein EUGRSUZ_H026192, partial [Eucalyptus grandis]
JMSF041D20Sequence756002396 (7)645008610 (3)gb|KCW59892.1|1e-31hypothetical protein EUGRSUZ_H026192, partial [Eucalyptus grandis]

Alignment

This contig is upended


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JMFS035C02+                                                                      A
                      ____________________________________________________________
consensus                                                                        A
 
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JMFS035C02+           AACCAATACTTATGGGCGGATGACATATTTTGGTTTTCCTTCAGCATCTTGTTGTCCAAT
JMSF040B08+                        GGGCGGATGACATATTTTGGTTTTCCTTCAGCATCTTGTTGTCCAAT
JMFS118A07+                        GGGCGGATGACATATTTTGGTTTTCCTTCAGCATCTTGTTGTCCAAT
JMSF041D20+                        GGGCGGATGACATATTTTGGTTTTCCTTCAGCATCTTGTTGTCCAAT
                      ____________________________________________________________
consensus             AACCAATACTTATGGGCGGATGACATATTTTGGTTTTCCTTCAGCATCTTGTTGTCCAAT
 
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JMFS035C02+           TGGTGCTCTACAATGTATCAATGCGTCCATCATATAGTTTTTTTCTGTTAAGATTGAATA
JMSF040B08+           TGGTGCTCTACAATGTATCAATGCGTCCATCATATAGTTTTTTTCTGTTAAGATTGAATA
JMFS118A07+           TGGTGCTCTACAATGTATCAATGCGTCCATCATATAGTTTTTTTCTGTTAAGATTGAATA
JMSF041D20+           TGGTGCTCTACAATGTATCAATGCGTCCATCATATAGTTTTTTTCTGTTAAGATTGAATA
                      ____________________________________________________________
consensus             TGGTGCTCTACAATGTATCAATGCGTCCATCATATAGTTTTTTTCTGTTAAGATTGAATA
 
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JMFS035C02+           TAAAACAATTTAGAACATAATTATACAAATATGGAAATGCTATAAAAAAGCAACATGAAG
JMSF040B08+           TAAAACAATTTAGAACATAATTATACAAATATGGAAATGCTATAAAAAAGCAACATGAAG
JMFS118A07+           TAAAACAATTTAGAACATAATTATACAAATATGGAAATGCTATAAAAAAGCAACATGAAG
JMSF041D20+           TAAAACAATTTAGAACATAATTATACAAATATGGAAATGCTATAAAAAAGCAACATGAAG
                      ____________________________________________________________
consensus             TAAAACAATTTAGAACATAATTATACAAATATGGAAATGCTATAAAAAAGCAACATGAAG
 
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JMFS035C02+           ATTTTAGCTCTGAGATGCGATTTTGATGGCCGTGGCTGTGGCGTGTGGCGTGTGGCGGTG
JMSF040B08+           ATTTTAGCTCTGAGATGCGATTTTGATGGCCGTGGCTGTGGCGTGTGGCGTGTGGCGGTG
JMFS118A07+           ATTTTAGCTCTGAGATGCGATTTTGATGGCCGTGGCTGTGGCGTGTGGCGTGTGGCGGTG
JMSF041D20+           ATTTTAGCTCTGAGATGCGATTTTGATGGCCGTGGCTGTGGCGTGTGGCGTGTGGCGGTG
                      ____________________________________________________________
consensus             ATTTTAGCTCTGAGATGCGATTTTGATGGCCGTGGCTGTGGCGTGTGGCGTGTGGCGGTG
 
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JMFS035C02+           CGTCGGCAGATCAGCGATGGTGGCGATGGCTGCGTCGAGGTTGTCACGGTGTGGTGCACA
JMSF040B08+           CGTCGGCAGATCAGCGATGGTGGCGATGGCTGCGTCGAGGTTGTCACGGTGTGGTGCACA
JMFS118A07+           CGTCGGCAGATCAGCGATGGTGGCGATGGCTGCGTCGAGGTTGTCACGGTGTGGTGCACA
JMSF002O23+                                                                GTGCACA
JMSF041D20+           CGTCGGCAGATCAGCGATGGTGGCGATGGCTGCGTCGAGGTTGTCACGGTGTGGTGCACA
                      ____________________________________________________________
consensus             CGTCGGCAGATCAGCGATGGTGGCGATGGCTGCGTCGAGGTTGTCACGGTGTGGTGCACA
 
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JMFS035C02+           TCGGCAGATCGTCGTCACGGTGGAGGTCGTGAGGCCAACGGCGTGGTGGTGGTGGGTGTT
JMSF040B08+           TCGGCAGATCGTCGTCACGNTGGAGGTCGTGAGGCCAACGGCGTGGTGGTGGTGGGTGTT
JMFS118A07+           TCGGCAGATCGTCGTCACGGTGGAGGTCGTGAGGCCAACGGCGTGGTGGTGGTGGGTGTT
JMSF002O23+           TCGGCAGATCGTCGTCACGGTGGAGGTCGTGAGGCCAACGGCGTGGTGGTGGTGGGTGTT
JMSF041D20+           TCGGCAGATCGTCGTCACGGTGGAGGTCGTGAGGCCAACGGCGTGGTGGTGGTGGGTGTT
                      ____________________________________________________________
consensus             TCGGCAGATCGTCGTCACGGTGGAGGTCGTGAGGCCAACGGCGTGGTGGTGGTGGGTGTT
 
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JMFS035C02+           GTGGCGGTGAGACGATCGAAGCAGACGACGGATGAACATTTTAGATCTGAGATGCGATTT
JMSF040B08+           GTGGCGGTGAGACGATCGAAGCAGACGACGGATGAAGATTTTAGATCTGAGATGCGATTT
JMFS118A07+           GTGGCGGTGAGACGATCGAAGCAGACGACGGATGAAGATTTTAGATCTGAGATGCGATTT
JMSF002O23+           GTGGCGGTGAGACGATCGAAGCAGACGACGGATGAAGATTTTAGATCTGAGATGCGATTT
JMSF011N11+                                                        TCTGAGATGCGATTT
JMSF016K14+                                                        TCTGAGATGCGATTT
JMSF041D20+           GTGGCGGTGAGACGATCGAAGCAGACGACGGATGAAGATTTTAGATCTGAGATGCGATTT
                      ____________________________________________________________
consensus             GTGGCGGTGAGACGATCGAAGCAGACGACGGATGAAGATTTTAGATCTGAGATGCGATTT
 
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JMFS035C02+           TGATGGCTGTAGCGTGTGGTGGTGCGTCGCGGTGAACGAAGCAGACGGTGGTGGGTGGCC
JMSF040B08+           TGATGGCTGTAGCGTGTGGTGGTGCGTCGCGGTGAACGAAGCAGACGGTGGTGGGTGGCC
JMFS118A07+           TGATGGCTGTAGCGTGTGGTGGTGCGTCGCGGTGAACGAAGCAGACGGTGGTGGGTGGCC
JMSF002O23+           TGATGGCTGTAGCGTGTGGTGGTGCGTCGCGGTGAACGAAGCAGACGGTGGTGGGTGGCC
JMSF011N11+           TGATGGCTGTAGCGTGTGGTGGTGCGTCGCGGTGAACGAAGCAGACGGTGGTGGGTGGCC
JMSF016K14+           TGATGGCTGTAGCGTGTGGTGGTGCGTCGCGGTGAACGAAGCAGACGGTGGTGGGTGGCC
JMSF041D20+           TGATGGCTGTAGCGTGTGGTGGTGCGTCGCGGTGAACGAAGCAGACGGTGGTGGGTGGCC
                      ____________________________________________________________
consensus             TGATGGCTGTAGCGTGTGGTGGTGCGTCGCGGTGAACGAAGCAGACGGTGGTGGGTGGCC
 
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JMFS035C02+           GGCGGCGTCAGAATATCGGCAGACGGTGTTGAAGATCGGAGCAGATCGGCAGGTCGGAGC
JMSF040B08+           GGCGGCGTCAGAATATCGGCAGACGGTGTTGAAGATCGGAGCAGATCGGCAGGTCGGAGC
JMFS118A07+           GGCGGCGTCAGAATATCGGCAGACGGTGTTGAAGATCGGAGCAGATCGGCAGGTCGGAGC
JMSF002O23+           GGCGGCGTCAGAATATCGGCAGACGGTGTTGAAGATCGGAGCAGATCGGCAGGTCGGAGC
JMSF011N11+           GGCGGCGTCAGAATATCGGCAGACGGTGTTGAAGATCGGAGCAGATCGGCAGGTCGGAGC
JMSF016K14+           GGCGGCGTCAGAATATCGGCAGACGGTGTTGAAGATCGGAGCAGATCGGCAGGTCGGAGC
JMSF041D20+           GGCGGCGTCAGAATATCGGCAGACGGTGTTGAAGATCGGAGCAGATCGGCAGGTCGGAGC
                      ____________________________________________________________
consensus             GGCGGCGTCAGAATATCGGCAGACGGTGTTGAAGATCGGAGCAGATCGGCAGGTCGGAGC
 
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JMFS035C02+           AGACGGTGTTGGGTATGAGAGGATGAGCGTACACGGTATTGGGTATGAGAGGATGAACAT
JMSF040B08+           AGACGGTGTTGGGTATGAGAGGATGAGCGTACACGGTATTGGGTATGAGAGGATGAACAT
JMFS118A07+           AGACGGTGTTGGGTATGAGAGGATGAGCGTACACGGTATTGGGTATGAGAGGATGAAC  
JMSF002O23+           AGACGGTGTTGGGTATGAGAGGATGAGCGTACACGGTATTGGGTATGAGAGGATGAACAT
JMSF011N11+           AGACGGTGTTGGGTATGAGAGGATGAGCGTACACGGTATTGGGTATGAGAGGATGAACAT
JMSF016K14+           AGACGGTGTTGGGTATGAGAGGATGAGCGTACACGGTATTGGGTATGAGAGGATGAACAT
JMSF041D20+           AGACGGTGTTGGGTATGAGAGGATGAGCGTACACGGTATTGGGTATGAGAGGATGAACAT
                      ____________________________________________________________
consensus             AGACGGTGTTGGGTATGAGAGGATGAGCGTACACGGTATTGGGTATGAGAGGATGAACAT
 
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JMFS035C02+           ATCTGATGGAGCGATGGTAGATCTAG                                  
JMSF040B08+           ATCT                                                        
JMSF002O23+           ATCTGATGGAGCGATGGTAGATCTAGGTTAATATTAGGCC                    
JMSF011N11+           ATCTGATGGAGCGATGGTAGATCTAGGTTAATATTAGGCC                    
JMSF016K14+           ATCT                                                        
JMSF041D20+           ATCTGATGGAGCGATGGTAGATCTAGGTTAATATTAGGCCACCATTTCTATTAGAAAATC
                      ____________________________________________________________
consensus             ATCTGATGGAGCGATGGTAGATCTAGGTTAATATTAGGCCACCATTTCTATTAGAAAATC