Contig 002393:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF041A18+                  GAACAGCAAAGAATTGGCTCCATCTCCCATTTGGCCATTATATTTCCAAAGA
rJMSF042A18+                  GAACAGCAAAGAATNGGCTCCATCTCCCATTTGGCCATTATATTTCCAAAGA
JMSF041A18-                   GAACAGCAAAGAATTGGCTCCATCTCCCATTTGGCCATTATATTTCCAAAGA
                      ____________________________________________________________
consensus                     GAACAGCAAAGAATTGGCTCCATCTCCCATTTGGCCATTATATTTCCAAAGA
 
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rJMSF041A18+          TATTGGAAGAAGATCACATGATGAGAATGAAGAAGAGGAAAAAGAAAAAAGAAAAAAAGC
rJMSF042A18+          TATTGGAAGAAGATCACATGATGAGAATGAAGAAGAGGAAAAAGAAAAAAGAAAAAAAGC
JMSF041A18-           TATTGGAAGAAGATCACATGATGAGAATGAAGAAGAGGAAAAAGAAAAAAGAAAAAAAGC
                      ____________________________________________________________
consensus             TATTGGAAGAAGATCACATGATGAGAATGAAGAAGAGGAAAAAGAAAAAAGAAAAAAAGC
 
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rJMSF041A18+          GTCTCTTTCAATTCTTAACCCGATATATATAGGGTTGGAAGAAGTGAGGGTTACAAACTA
rJMSF042A18+          GTCTCTTTCAATTCTTAACCCGATATATATAGGGTTGGAAGAAGTGAGGGTTACAAATTA
JMSF041A18-           GTCTCTTTCAATTCTTAACCCGATATATATAGGGTTGGAAGAAGTGAGGGTTACAAACTA
                      ____________________________________________________________
consensus             GTCTCTTTCAATTCTTAACCCGATATATATAGGGTTGGAAGAAGTGAGGGTTACAAACTA
 
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rJMSF041A18+          CAAGCAAAAGGCAAGTCATGCAGGCAAAGGGAAGGTCATGCCTTTCTTCCAGATTTTAAT
rJMSF042A18+          CAAGCAAAAGGCAAGTCATGCAGGCAAAGGGAAGGTCATGCCTNTCTTCCAGATTTTAAN
JMSF041A18-           CAAGCAAAAGGCAAGTCATGCAGGCAAAGGGAAGGTCATGCCTTTCTTCCAGATTTTAAT
                      ____________________________________________________________
consensus             CAAGCAAAAGGCAAGTCATGCAGGCAAAGGGAAGGTCATGCCTTTCTTCCAGATTTTAAT
 
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rJMSF041A18+          TATGTTTTTCTTGTATAACCATACGTACCGGAATGTATTAGTTTTCAATTTCCAATTTAG
rJMSF042A18+          TATGTTTTTCTNGTATAACCATACGTACCGGAANGTATTAGTCTTCAATTTCCAATTTAG
JMSF041A18-           TATGTTTTTCTTGTATAACCATACGTACCGGAATGTATTAGTTTTCAATTTCCAATTTAG
                      ____________________________________________________________
consensus             TATGTTTTTCTTGTATAACCATACGTACCGGAATGTATTAGTTTTCAATTTCCAATTTAG
 
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rJMSF041A18+          TGTCTGTATGTGATGTTGTATTTCAGTAGTGTTGGGTTGGGATACACACACAAGGGTCGG
rJMSF042A18+          TGTCTGTATGTGATGTTGTATTTCAGTAGTGTTGGGTTGGGATACACACACAAGGGTCGG
JMSF041A18-           TGTCTGTATGTGATGTTGTATTTCAGTAGTGTTGGGTTGGGATACACACACAAGGGTCGG
                      ____________________________________________________________
consensus             TGTCTGTATGTGATGTTGTATTTCAGTAGTGTTGGGTTGGGATACACACACAAGGGTCGG
 
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rJMSF041A18+          TTTCAAGTGAAAACCTATGTTTAGGTGTGAAATTGTGAACTCCTATATCT-ACTGTTTAG
rJMSF042A18+          TTTCAAGTGAAAACCTATGTTTAGGTGTGAAATTGNGAACTCCTATATCTAACTGTTTAG
JMSF041A18-           TTTCAAGTGAAAACCTATGTTTAGGTGTGAAATTGTGAACTCCTATATCT-ACTGTTTAG
                      ____________________________________________________________
consensus             TTTCAAGTGAAAACCTATGTTTAGGTGTGAAATTGTGAACTCCTATATCT-ACTGTTTAG
 
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rJMSF041A18+          ATGAGAGATCAGACCGATGAAATGTT                                  
rJMSF042A18+          ATGAGNGATCAGACCGATGAAATGTT                                  
JMSF041A18-           ATGAGAGATCAGACCGATGAAATGTTTGGAGTGGTGCACTGGTGCATCTGATGCAGTGAG
                      ____________________________________________________________
consensus             ATGAGAGATCAGACCGATGAAATGTTTGGAGTGGTGCACTGGTGCATCTGATGCAGTGAG
 
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JMSF041A18-           TGATGTATATTTATTACCCGTCAAAAAAATTATAAATTACAAGATCAAGCAAAAAAAAAA
                      ____________________________________________________________
consensus             TGATGTATATTTATTACCCGTCAAAAAAATTATAAATTACAAGATCAAGCAAAAAAAAAA