Contig 002389:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040G21-                          TATGAAGCTTTTATCACCTTTTAGTCCCCATTGTCATCAAGTTG
                      ____________________________________________________________
consensus                             TATGAAGCTTTTATCACCTTTTAGTCCCCATTGTCATCAAGTTG
 
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rJMSF040G21-          AAAATGATGTGAGAAACTCAGTATAGCAAAATAACCAATGCTAAAAAATAACATTGTGTT
                      ____________________________________________________________
consensus             AAAATGATGTGAGAAACTCAGTATAGCAAAATAACCAATGCTAAAAAATAACATTGTGTT
 
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rJMSF040G21-          TTTGGATATATAAATCTAATATACTCACTATTCAAAATACATGAATGTTAAAATAAACCT
rJMSF036L13-                                            AAATACATGAATGTTAAAATAAACCT
                      ____________________________________________________________
consensus             TTTGGATATATAAATCTAATATACTCACTATTCAAAATACATGAATGTTAAAATAAACCT
 
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rJMSF040G21-          GCTGAAATCCGTGGATAATTTGAACTTAATAAGTAAGCTGACAAATACATAAGTAATACT
rJMSF036L13-          GCTGAAATCCGTGGATAATTTGAACTTAATAAGTAAGCTGACAAATACATAAGTAATACT
                      ____________________________________________________________
consensus             GCTGAAATCCGTGGATAATTTGAACTTAATAAGTAAGCTGACAAATACATAAGTAATACT
 
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rJMSF040G21-          AGTAATAGCTGACAACTGCATTAACGTTACTGGAGAATGATGGAAAAATAGAATCCATTT
rJMSF036L13-          AGTAATAGCTGACAACTGCATTAACGTTACTGGAGAATGATGGAAAAATAGAATCCATTT
                      ____________________________________________________________
consensus             AGTAATAGCTGACAACTGCATTAACGTTACTGGAGAATGATGGAAAAATAGAATCCATTT
 
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rJMSF040G21-          CTTTGTGTAAGTTGCCTTGATCGTGTTAATATTTGGGAATTTCGTGCTTAATAATAAAAA
rJMSF036L13-          CTTTGTGTAAGTTGCCTTGATCGTGTTAATATTTGGGAATTTCGTGCTTAATAATAAAAA
                      ____________________________________________________________
consensus             CTTTGTGTAAGTTGCCTTGATCGTGTTAATATTTGGGAATTTCGTGCTTAATAATAAAAA
 
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rJMSF040G21-          TATCTGAAATCAACATTTTATTACAGAATTCTGAATAATCAAAATAACAAAAAGGGAATT
rJMSF036L13-          TATCTGAAATCAACATTTTATTACAGAATTCTGAATAATCAAAATAACAAAAAGGGAATT
rJMSF003O14-                      ACATTTTATTACAGAATTCTGAATAATCAAAATAACAAAAAGGGAATT
                      ____________________________________________________________
consensus             TATCTGAAATCAACATTTTATTACAGAATTCTGAATAATCAAAATAACAAAAAGGGAATT
 
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rJMSF040G21-          ATATTGTGTACCTTGAAGTAGTCGTTCAGTGGTGAACTGATAATACCTTAAAAGTCCCGG
rJMSF036L13-          ATATTGTGTACCTTGAAGTAGTCGTTCAGTGGTGAACTGATAATACCTTAAAAGTCCCGG
rJMSF003O14-          ATATTGTGTACCTTGAAGTAGTCGTTCAGTGGTGAACTGATAATACCTTAAAAGTCCCGG
                      ____________________________________________________________
consensus             ATATTGTGTACCTTGAAGTAGTCGTTCAGTGGTGAACTGATAATACCTTAAAAGTCCCGG
 
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rJMSF040G21-          TAGTTGATAGTTTTCTTGCTCTTGTTGGTGTCGTACGGATATACAATTGTGCTTTAAGTT
rJMSF036L13-          TAGTTGATAGTTTTCTTGCTCTTGTTGGTGTCGTACGGATATACAATTGTGCTTTAAGTT
rJMSF003O14-          TAGTTGATAGTTTTCTTGCTCTTGTTGGTGTCGTACGGATATACAATTGTGCTTTAAGTT
                      ____________________________________________________________
consensus             TAGTTGATAGTTTTCTTGCTCTTGTTGGTGTCGTACGGATATACAATTGTGCTTTAAGTT
 
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rJMSF040G21-          ACTTTATCCATGATATGTGTATTTATTCATGGACAAGCAAGTGAAGCAACAGAATAGTTT
rJMSF036L13-          ACTTTATCCATGATATGTGTATTTATTCATGGACAAGCAAGTGAAGCAACAGAATAGTTT
rJMSF003O14-          ACTTTATCCATGATATGTGTATTTATTCATGGACAAGCAAGTGAAGCAACAGAATAGTTT
                      ____________________________________________________________
consensus             ACTTTATCCATGATATGTGTATTTATTCATGGACAAGCAAGTGAAGCAACAGAATAGTTT
 
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rJMSF040G21-          GCTCTGAAGGGTTGAGAACTTGTAGACGGGAGCAGGAGGCAAAGAGAAAGAGAAGAGGAA
rJMSF036L13-          GCTCTGAAGGGTTGAGAACTTGTAGACGGGAGCAGGAGGCAAAGAGAAAGAGAAGAGGAA
rJMSF003O14-          GCTCTGAAGGGTTGAGAACTTGTAGACGGGAGCAGGAGGCAAAGAGAAAGAGAAGAGGAA
                      ____________________________________________________________
consensus             GCTCTGAAGGGTTGAGAACTTGTAGACGGGAGCAGGAGGCAAAGAGAAAGAGAAGAGGAA
 
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rJMSF040G21-          AAAAAAGAGGGACACGACACACCGGAAAGGAGAGCCGGGCAATCCCGTGCCATCTCCTCT
rJMSF036L13-          AAAAAAGAGGGACACGACACACAGGAAAGGAGAGCCGGGCAATCCCGTGCCATCTCCTCT
rJMSF003O14-          AAAAAAGAGGGACACGACACACCGGAAAGGAGAGCCGGGCAATCCCGTGCCATCTCCTCT
JMFN035D18+                                                        CGTGCCATCTCCTCT
JMSF040G21+                             ACACCGGAAAGGAGAGCCGGGCAATCCCGTGCCATCTCCTCT
                      ____________________________________________________________
consensus             AAAAAAGAGGGACACGACACACCGGAAAGGAGAGCCGGGCAATCCCGTGCCATCTCCTCT
 
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rJMSF040G21-          CCAAAAACAAAAAACAGAAATTTTATTAGGGTTGTTGACCTGCCATGCGAGCGCACCCAT
rJMSF036L13-          CCAAAAACAAAAAACAGAAATTTTATTAGGGTTGTTGACCTGCCATGCGAGCGCACCCAT
rJMSF003O14-          CCAAAAACAAAAAACAGAAATTTTATTAGGGTTGTTGACCTGCCATGCGAGCGCACCCAT
JMFN035D18+           TCAAAAACAAAAACCAGAAATTTTATTAGGGTGGTTGACCTGCCATGCGAGCGCACCCAT
JMSF040G21+           CCAAAAACAAAAAACAGAAATTTTATTAGGGTTGTTGACCTGCCATGCGAGCGCACCCAT
                      ____________________________________________________________
consensus             CCAAAAACAAAAAACAGAAATTTTATTAGGGTTGTTGACCTGCCATGCGAGCGCACCCAT
 
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rJMSF040G21-          CATGGCAAAGGTCGATAGACAACAGTAACTACGTAACACAGTTATCAACTCATTATCCTG
rJMSF036L13-          CATGGCAAAGGTCGATAGACAACAGTAACTACGTAACACAGTTATCAACTCATTATCCTG
rJMSF003O14-          CATGGCAAAGGTCGATAGACAACAGTAACTACGTAACACAGTTATCAACTCATTATCCTG
JMFN035D18+           CATGGCAAAGGTCGATAGACAACAGTAACTACGTAACACAGTTATCAACTCATTATCCTG
JMSF040G21+           CATGGCAAAGGTCGATAGACAACAGTAACTACGTAACACAGTTATCAACTCATTATCCTG
                      ____________________________________________________________
consensus             CATGGCAAAGGTCGATAGACAACAGTAACTACGTAACACAGTTATCAACTCATTATCCTG
 
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rJMSF040G21-          CCTACC                                                      
rJMSF036L13-          CCTACCGTATCGCCTCGTCTCTACCTATATTATACAA                       
rJMSF003O14-          CCTACCGTATCGCCTCGTCTCTACCTATATTATACAAATGCATGATTATCACCATTCACA
JMFN035D18+           CCTACCGTATCGCCTCGTCTCTACCTATATTATACAAATGCATGATTATCACCATTCACA
JMSF040G21+           CCTACCGTATCGCCTCGTCTCTACCTATATTATACAAATGCATGATTATCACCATTCACA
                      ____________________________________________________________
consensus             CCTACCGTATCGCCTCGTCTCTACCTATATTATACAAATGCATGATTATCACCATTCACA
 
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rJMSF003O14-          AGCTTAAATAAAGAGCGAAACATAAATCAACGGAACAATCAATAAACCATCTTAACCTTG
JMFN035D18+           AGCTTAAATAAAGAGCGAAACATAAATCAACGGAACAATCAATAAACCATCTTAACCTTG
JMSF040G21+           AGCTTAAATAAAGAGCGAAACATAAATCAACGGAACAATCAATAAACCATCTTAACCTTG
                      ____________________________________________________________
consensus             AGCTTAAATAAAGAGCGAAACATAAATCAACGGAACAATCAATAAACCATCTTAACCTTG
 
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rJMSF003O14-          ATCAACACAGCACTTCATTTTCCCAATCTAGACCATCCGATCAAATAGGTCACATTCGAT
JMFN035D18+           ATCAACACAGCACTTCATTTTCCCAATCTAGACCATCTGATCAAATAGGTCACATTCGAT
JMSF040G21+           ATCAACACAGCACTTCATTTTCCCAATCTAGACCATCCGATCAAATAGGTCACATTCGAT
                      ____________________________________________________________
consensus             ATCAACACAGCACTTCATTTTCCCAATCTAGACCATCCGATCAAATAGGTCACATTCGAT
 
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rJMSF003O14-          CAGCTCCGGTGGTCCAAAATAGAAACATCCACATAGCCGATCAAACAAAAAACCAAGCAA
JMFN035D18+           CAGCTCCGGTGGTCCAAAATAGAAACATCCACATAGCCGATCAAACAAAAAACCAAGCAA
JMSF011B19+                                       CCACATAGCCGATCAAACAAAAAACCAAGCAA
JMSF040G21+           CAGCTCCGGTGGTCCAAAATAGAAACATCCACATAGCCGATCAAACAAAAAACCAAGCAA
                      ____________________________________________________________
consensus             CAGCTCCGGTGGTCCAAAATAGAAACATCCACATAGCCGATCAAACAAAAAACCAAGCAA
 
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rJMSF003O14-          TCATAGTTGCTTTCACAATGATCTC                                   
JMFN035D18+           TCATAGTTGCTTTCACAATGATCTCCGACGATGCAGCACCAACCGTCATCAGATACGGCT
JMSF011B19+           TCATAGTTGCTTTCACAATGATCTCCGACGATGCAGCACCAACCGTCATCAGATACGGCT
JMFF048M04+                                        GATGCAGCACCAACAGTCCTCAGATTCGGCT
JMSF040G21+           TCATAGTTGCTTTCACAATGATCTCCGACGATGCAGCACCAACCGTCATCAGATACGGCT
                      ____________________________________________________________
consensus             TCATAGTTGCTTTCACAATGATCTCCGACGATGCAGCACCAACCGTCATCAGATACGGCT
 
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JMFN035D18+           TATCCTCCGATGTTCATCAACTACCAACAAAATCATGCTCAATCAATAGATCGTCGATCG
JMSF011B19+           TATCCTCCGATGTTCATCAACTACCAACAAAATCATGCT-AATCAATAGATCGTCGATCG
JMFF048M04+           TATCCTCCGATGTTAATCATTTTCCACCAAAATCATGCTCAATCAATAGATCGTCGATCG
JMSF040G21+           TATCCTCCGATGTTCATCAACTACCAACAAAATCATGCTCAATCAATAGATCGTCGATCG
                      ____________________________________________________________
consensus             TATCCTCCGATGTTCATCAACTACCAACAAAATCATGCTCAATCAATAGATCGTCGATCG
 
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JMFN035D18+           ATCTATAAGGAAATTAAGGAAGCATCGACGGAAAACATCGCTGGTCGCATAGATCTGAAC
JMSF011B19+           ATCTATAAGGAAATTAAGGAAGCATCGACGGAAAACATCGCTGGTCGCATAGATCTGAAC
JMFF048M04+           ATGTATAAGGAACTTAAGGAAGCATGGGCGGAAAACATCGGTGGTCGCATAGATGTGAAC
JMSF040G21+           ATCTATAAGGAAATTAAGGAAGCATCGACGGAAAACATCGCTGGTCGCATAGATCTGAAC
                      ____________________________________________________________
consensus             ATCTATAAGGAAATTAAGGAAGCATCGACGGAAAACATCGCTGGTCGCATAGATCTGAAC
 
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JMFN035D18+           AAATTTGCATATCTGCA                                           
JMSF011B19+           AAATTTGCATATCTGCAGAGAAAGTACAAACGACAAGAGGCCAGACGGCTGTAAAATGC 
JMFF048M04+           AAATTTGCATATGTGCAGAGAAAGTACAAGAGCCAAGAGGCCAG                
JMSF040G21+           AAATTTGCATATCTGCAGAGAAAGTACAAACGACAAGAGGCCAGACGGCTGTAAAATGCC
                      ____________________________________________________________
consensus             AAATTTGCATATCTGCAGAGAAAGTACAAACGACAAGAGGCCAGACGGCTGTAAAATGCC