Contig 002384:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019N10Sequence457002384 (2)ref|XP_009623060.1|6e-83PREDICTED: rab9 effector protein with kelch motifs [Nicotiana tomentosiformis]799001338 (4)ref|XP_009763862.1|3e-69PREDICTED: acyl-CoA-binding domain-containing protein 5 isoform X2 [Nicotiana s
JMSF039N13Sequence682002384 (2)ref|XP_009623060.1|1e-130PREDICTED: rab9 effector protein with kelch motifs [Nicotiana tomentosiformis]877001338 (4)ref|XP_010312554.1|1e-92PREDICTED: LOW QUALITY PROTEIN: acyl-CoA-binding domain-containing protein 4 [S

Alignment

This contig is upended


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JMSF039N13+                                                 TTCAAAGCCCATAAATCACCCA
                      ____________________________________________________________
consensus                                                   TTCAAAGCCCATAAATCACCCA
 
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JMSF039N13+           TAATTGGCCCTCCACNTCCTCTACCACCATAGACAAGCAACCTTTTCTCAACCATAGTAG
                      ____________________________________________________________
consensus             TAATTGGCCCTCCACNTCCTCTACCACCATAGACAAGCAACCTTTTCTCAACCATAGTAG
 
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JMSF039N13+           CAGTATGGCCACATCTTGGTGGAGGTAAAGCTCCAGAAACAGACAACTCTGTCCACTCAA
                      ____________________________________________________________
consensus             CAGTATGGCCACATCTTGGTGGAGGTAAAGCTCCAGAAACAGACAACTCTGTCCACTCAA
 
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JMSF039N13+           GAGAAATTGTGTCCAAAATATAGACATCTGACAACCACTTTTTACCATCCCAGCCACCAT
                      ____________________________________________________________
consensus             GAGAAATTGTGTCCAAAATATAGACATCTGACAACCACTTTTTACCATCCCAGCCACCAT
 
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JMSF019N10+                               CCAATGGCTGAAGCAGCTGCAAAGTCCCTAGCTGAAGGCA
JMSF039N13+           ACATAACAATTTTACTGTTTCCAATGGCTGAAGCAGCTGCAAAGTCCCTAGCTGAAGGCA
                      ____________________________________________________________
consensus             ACATAACAATTTTACTGTTTCCAATGGCTGAAGCAGCTGCAAAGTCCCTAGCTGAAGGCA
 
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JMSF019N10+           AGTCACCGAAACTTGTAAGTTCTGACCATTGCCAGATATCAGTATCCAGTACCCAAAAGT
JMSF039N13+           AGTCACCGAAACTTGTAAGTTCTGACCATTGCCAGATATCAGTATCCAGTACCCAAAAGT
                      ____________________________________________________________
consensus             AGTCACCGAAACTTGTAAGTTCTGACCATTGCCAGATATCAGTATCCAGTACCCAAAAGT
 
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JMSF019N10+           CACCTAGCCTTTTACTGCCATATCTCCCACCAAAAATGAACATATGACAGTCAATTGCAA
JMSF039N13+           CACCTAGCCTTTTACTGCCATATCTCCCACCAAAAATGAACATATGACAGTCAATTGCAA
                      ____________________________________________________________
consensus             CACCTAGCCTTTTACTGCCATATCTCCCACCAAAAATGAACATATGACAGTCAATTGCAA
 
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JMSF019N10+           TAGCAATGTGAAATGCCCGTGGGCAAGGGCCCACTCGGTCATCAGAACCACTGCCAGTGC
JMSF039N13+           TAGCAATGTGAAATGCCCGTGGGCAAGGGCCCACTCGGTCATCAGAACCACTGCCAGTGC
                      ____________________________________________________________
consensus             TAGCAATGTGAAATGCCCGTGGGCAAGGGCCCACTCGGTCATCAGAACCACTGCCAGTGC
 
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JMSF019N10+           ACTCTGGCTGAAACCATAATTTGTTCTCAATGTCATAAACCGTAATGTCGTTGAGGAATG
JMSF039N13+           ACTCTGGCTGAAACCATAATTTGTTCTCAATGTCATAAACCGTAATGTCGTTGAGGAATG
                      ____________________________________________________________
consensus             ACTCTGGCTGAAACCATAATTTGTTCTCAATGTCATAAACCGTAATGTCGTTGAGGAATG
 
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JMSF019N10+           TCTTGTCTACCAGCCCTCCGAAAACCACCACCTTTGATTTTCCGATGTTCACAGCTGTGT
JMSF039N13+           TCTTGTCTACCAGCCCTCCGAAAACCACCACCTTTGATTTTCCGATGTTCACAGCTGTGT
                      ____________________________________________________________
consensus             TCTTGTCTACCAGCCCTCCGAAAACCACCACCTTTGATTTTCCGATGTTCACAGCTGTGT
 
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JMSF019N10+           GTCCACTTCTAGGTTGGGGAAGAACTCCGCCGAAATCGGAAGGAGAAGCTCGAACCCAGT
JMSF039N13+           GTCCACTTCTAGGTTGGGGAAGAACTCCGCCGAAATCGGAAGGAGAAGCTCGAACCCAGT
                      ____________________________________________________________
consensus             GTCCACTTCTAGGTTGGGGAAGAACTCCGCCGAAATCGGAAGGAGAAGCTCGAACCCAGT
 
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JMSF019N10+           AATGCATCTTCTCTCTCTCTCTCTCCGGCGAATAGTTGACTTCAGATCAGTCGATC    
JMSF039N13+           AATGCATCTTCTCTCTCTCTCTCTCCGGCGAATAGTTGACTTCAGATCAGTCGATCGTTC
                      ____________________________________________________________
consensus             AATGCATCTTCTCTCTCTCTCTCTCCGGCGAATAGTTGACTTCAGATCAGTCGATCGTTC