Contig 002382:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN009F11Sequence625002382 (3)ref|XP_009609142.1|4e-121PREDICTED: 60S ribosomal protein L18a [Nicotiana tomentosiformis] ref|XP_0096278
JMSF039I10Sequence575002382 (3)ref|XP_009609142.1|2e-107PREDICTED: 60S ribosomal protein L18a [Nicotiana tomentosiformis] ref|XP_0096278686002382 (3)ref|XP_009799848.1|1e-87PREDICTED: 60S ribosomal protein L18a [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN009F11+                             GAAATTGATTATGATGCAGGCCAAACAAGTTACACAAAGAGG
rJMSF039I10-                                                        GTTACACAAAGAGG
                      ____________________________________________________________
consensus                               GAAATTGATTATGATGCAGGCCAAACAAGTTACACAAAGAGG
 
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JMFN009F11+           TTGGGTCTTGATGCCTTGTAGGTGGTCTTAAGCTTCCTGCTTGGTGGCCTCACTTTCTTG
rJMSF039I10-          TTGGGTCTTGATGCCTTGNANGTGGTCTTAANCTTCCTGCTTGGTGGCCTCACTTTCTTG
JMSF039I10+                                   GTCTTAAGCTTCCTGCTTGGTGGCCTCACTTTCTTG
                      ____________________________________________________________
consensus             TTGGGTCTTGATGCCTTGTAGGTGGTCTTAAGCTTCCTGCTTGGTGGCCTCACTTTCTTG
 
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JMFN009F11+           AACACCAAAGGGAACTTGATCTTGGAGTTGAGGAACTGCTTGGTGCTCTCTCTCTTGCAG
rJMSF039I10-          AACACCAAANGGAACTTGATCTTGGAGTTGAGGAACTGCTTGGNGCTCTCTCTCTTGCAN
JMSF039I10+           AACACCAAAGGGAACTTGATCTNGGAGTTGAGGAACTGCTTGGTGCTCTCTCTCTTGCAG
                      ____________________________________________________________
consensus             AACACCAAAGGGAACTTGATCTTGGAGTTGAGGAACTGCTTGGTGCTCTCTCTCTTGCAG
 
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JMFN009F11+           AGCTTGGCTGGGATAGTAGCTGTCTTGATGATTTGGATGCAGTGATGACGCACCCTGTGA
rJMSF039I10-          AGCTTGGCTGGGATAGTAGCTGTCTTGATGATTTGGATGCAGTGATGACNCACCCTGTGA
JMSF039I10+           AGCTTGGCTGGGATAGTAGCTGTCTTGATGATTTGGATGCAGTGATGACGCACCCTGTGA
                      ____________________________________________________________
consensus             AGCTTGGCTGGGATAGTAGCTGTCTTGATGATTTGGATGCAGTGATGACGCACCCTGTGA
 
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JMFN009F11+           CGAGAAGCCATCTCAGTGTACATCTGCTCTACAGCACCATTCAAGGTTGTATCGCGGAAC
rJMSF039I10-          CNAGAAGCCANCTCANTGTACATCTGCTCTACAGCACCATTCAAGGTTGTATCGCGGAAC
JMSF039I10+           CGAGAAGCCATCTCAGTGTACATNTGCTCTACAGCACCATTCAAGGTTGTATCGCGGAAC
                      ____________________________________________________________
consensus             CGAGAAGCCATCTCAGTGTACATCTGCTCTACAGCACCATTCAAGGTTGTATCGCGGAAC
 
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JMFN009F11+           TCCTTGTACATATTATGGTATCCAGTTCGGCTTTGATACCTCAACCATACACCATAATTG
rJMSF039I10-          TCCTTGTACATATTATGGTATCCAGTTCGGCTTTGATACCTCAACCATACACCATAATTG
JMSF039I10+           TCCTTGTACATATTATGGTATCCAGTTCGGCTTTGATACCTCAACCATACACCATAATTG
                      ____________________________________________________________
consensus             TCCTTGTACATATTATGGTATCCAGTTCGGCTTTGATACCTCAACCATACACCATAATTG
 
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JMFN009F11+           TTGATCTTAGTAGGATTCTTCTCAAAGATCTCATTGATAGCTAGGACCTGACCATTGGCC
rJMSF039I10-          TTGATCTTAGTAGGATTCTTCTCNAAGATCTCATTGATAGCTAGGACCTGACCATTGGCC
JMSF039I10+           TTGATCTTAGTAGGATTCTTCTCAAAGATCTCANTGATAGNTAGGACCTGACCATTGGCC
                      ____________________________________________________________
consensus             TTGATCTTAGTAGGATTCTTCTCAAAGATCTCATTGATAGCTAGGACCTGACCATTGGCC
 
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JMFN009F11+           TTTTTCACCTTCTTCAGCTTCCTCAAAAAATACCAGAATTTGGACTTGGCACGGACCTCA
rJMSF039I10-          TTTTTCACCTTCTTCAGCTTCCTCAAAAAATACCAGAATTTGGACTTGGCACGGACCTCA
JMSF039I10+           TTTTTCACCTTCTTCAGCTTCCTCAAAAAATACCAGAATTTGGACTTGGCACGGACCTCA
                      ____________________________________________________________
consensus             TTTTTCACCTTCTTCAGCTTCCTCAAAAAATACCAGAATTTGGACTTGGCACGGACCTCA
 
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JMFN009F11+           TTTGTGGCCCA-GAGCTTCATGCGGTAGATCTTAGGGTGCTCATCGGTCTCCGTCGGGAG
rJMSF039I10-          TTTGTGGCCCAGGAGCTTCATGCGGTAGATCTTAAGGTGCTCATCGGTCTCCGTCGGGAG
JMSF039I10+           TTTGTGGCCCA-GAGCTTCATGCGGTAGATNTTAGGGTGCTCATCGGTCTCCGTCGGGAG
                      ____________________________________________________________
consensus             TTTGTGGCCCA-GAGCTTCATGCGGTAGATCTTAGGGTGCTCATCGGTCTCCGTCGGGAG
 
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JMFN009F11+           AGCTCTTCCAACCACCTGGTACTGATGGAATCTGTAGGTCACCAT               
rJMSF039I10-          AGCTCTTCCAACCACCTGGTACTGATGGAATCNGTAGGTCACCAT               
JMSF039I10+           AGCTCTTCCAACCACCTGGTACTGANGGAATCTGTAGGTCACCATCTTCTCCACAAGCTG
                      ____________________________________________________________
consensus             AGCTCTTCCAACCACCTGGTACTGATGGAATCTGTAGGTCACCATCTTCTCCACAAGCTG
 
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JMSF039I10+           AACTCCCTCTCTCTCTCTCTCTCTCTCTCTCTGGCTTCACTCCCCGCCGCTTTGCCGATC
                      ____________________________________________________________
consensus             AACTCCCTCTCTCTCTCTCTCTCTCTCTCTCTGGCTTCACTCCCCGCCGCTTTGCCGATC