Contig 002380:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007D20Sequence410002380 (5)ref|XP_010086894.1|2e-2540S ribosomal protein S30 [Morus notabilis] gb|EXB24685.1| 40S ribosomal protein370002380 (5)ref|XP_010086894.1|1e-2540S ribosomal protein S30 [Morus notabilis] gb|EXB24685.1| 40S ribosomal protein
JMFN033D07Sequence569002380 (5)ref|XP_010670553.1|2e-25PREDICTED: 40S ribosomal protein S30 [Beta vulgaris subsp. vulgaris] ref|XP_0106
JMSF039F08Sequence485002380 (5)ref|XP_003608708.1|2e-2540S ribosomal protein S30 [Medicago truncatula] ref|XP_003611308.1| 40S ribosoma436002380 (5)ref|XP_003608708.1|1e-2540S ribosomal protein S30 [Medicago truncatula] ref|XP_003611308.1| 40S ribosoma

Alignment

This contig is upended


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JMFN033D07+                   TAATACTACTGTGTCTGCAACTGTGAAAGTAGATATTTTGTGCTCTTACAAT
                      ____________________________________________________________
consensus                     TAATACTACTGTGTCTGCAACTGTGAAAGTAGATATTTTGTGCTCTTACAAT
 
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JMFN033D07+           TGCAAAAAGATTTAGACTGACAAGTAATCAATGAAACAACCGAAGTATAAAAAAAAATCC
                      ____________________________________________________________
consensus             TGCAAAAAGATTTAGACTGACAAGTAATCAATGAAACAACCGAAGTATAAAAAAAAATCC
 
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JMFN033D07+           ACATTCAGCGGGCACCTAAACAGTATTCATTAGAACAAATCTGTGACTTAATCACAATCA
                      ____________________________________________________________
consensus             ACATTCAGCGGGCACCTAAACAGTATTCATTAGAACAAATCTGTGACTTAATCACAATCA
 
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JMFN033D07+           AACTTAAGTAGAGTTCAACACAAATCACCAAAATCCGGAAATATGTAGTTTACTAAAACA
                      ____________________________________________________________
consensus             AACTTAAGTAGAGTTCAACACAAATCACCAAAATCCGGAAATATGTAGTTTACTAAAACA
 
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JMFN033D07+           ATCCATAATGCTATAATGTTAAAAACTAACCATCCTAATTCAAAACTCTTGCACCCTCAA
                      ____________________________________________________________
consensus             ATCCATAATGCTATAATGTTAAAAACTAACCATCCTAATTCAAAACTCTTGCACCCTCAA
 
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JMFN033D07+           CACCACCATCTTCAATTACTTCATCTACTTCTCAGATGAGTTTGGTCCTCTCTTCTTTCC
rJMSF039F08-                            CTTCATCTACTTCTCAGATGAGTTTGGTCCTCTCTTCTTTCC
rJMFF007D20-                            CTTCATTTACTTCTCAGATGAGTTTGGCCCTCTCTTCTTACC
JMFF007D20+                             CTTCATTTACTTCTCAGATGAGTTTGGCCCTCTCTTCTTACC
JMSF039F08+                             CTTCATCTACTTCTCAGATGAGTTTGGTCCTCTCTTCTTTCC
                      ____________________________________________________________
consensus             CACCACCATCTTCAATTACTTCATCTACTTCTCAGATGAGTTTGGTCCTCTCTTCTTTCC
 
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JMFN033D07+           GAAGCCAACAACGGCAGTGACGAAGCGGCGGTTGTACTGCATCCGCTTGTGAGCGCGGCC
rJMSF039F08-          GAAGCCAACAACGGCAGTGACGAAGCGGCGGTTGTACTGCATCCGCTTGTGAGCGCGGCC
rJMFF007D20-          AAAGCAAACAACGGCTGTAACAAAGCGGCGATTGTACTGCATCCGCTTATGAGCACGGCC
JMFF007D20+           AAAGCAAACAACGGCTGTAACAAAGCGGCGATTGTACTGCATCCGCTTATGAGCACGGCC
JMSF039F08+           GAAGCCAACAACGGCAGTGACGAAGCGGCGGTTGTACTGCATCCGCTTGTGAGCGCGGCC
                      ____________________________________________________________
consensus             GAAGCCAACAACGGCAGTGACGAAGCGGCGGTTGTACTGCATCCGCTTGTGAGCGCGGCC
 
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JMFN033D07+           TCGGGGCTTCTTCTTCTTGTCCTGTTTAGCAACCTTCGGAGTTTGACCTCTTACCTTACC
rJMSF039F08-          TCGGGGCTTCTTCTTCTTGTCCTGTTTAGCAACCTTCGGAGTTTGACCTCTCACCTTACC
rJMFF007D20-          GCGGGGCTTCTTCTTCTTATCTTGCTTGGCAACCTTAGGAGTCTGCCCTCTCACCTTGCC
JMFF007D20+           GCGGGGCTTCTTCTTCTTATCTTGCTTGGCAACCTTAGGAGTCTGCCCTCTCACCTTGCC
JMSF039F08+           TCGGGGCTTCTTCTTCTTGTCCTGTTTAGCAACCTTCGGAGTTTGACCTCTCACCTTACC
                      ____________________________________________________________
consensus             TCGGGGCTTCTTCTTCTTGTCCTGTTTAGCAACCTTCGGAGTTTGACCTCTCACCTTACC
 
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JMFN033D07+           GGCACGAGCCAAAGATCCATGAACCTTACCCAT                           
rJMSF039F08-          GGCACGAGCCAAAGATCCATGAACCTTACCCATATTTGGTTTCTGAGATCGGCGGAGAGT
rJMFF007D20-          GGCACGAGCCAAAGATCCGTGTACCTTACCCAT                           
JMFF007D20+           GGCACGAGCCAAAGATCCGTGTACCTTACCCAT                           
JMSF039F08+           GGCACGAGCCAAAGATCCATGAACCTTACCCATATTTGGTTTCTGAGATCGGCGGAGAGT
                      ____________________________________________________________
consensus             GGCACGAGCCAAAGATCCATGAACCTTACCCATATTTGGTTTCTGAGATCGGCGGAGAGT
 
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rJMSF039F08-          GCAGGGAAAACTTCGCCCTCTTCGACTGCTGGCTTGCCTCTAGCTTCCGAAAGGAATTCC
JMSF039F08+           GCAGGGAAAACTTCGCCCTCTTCGACTGCTGGCTTGCCTCTAGCTTCCGAAAGGAATTCC
                      ____________________________________________________________
consensus             GCAGGGAAAACTTCGCCCTCTTCGACTGCTGGCTTGCCTCTAGCTTCCGAAAGGAATTCC