Contig 002379:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007A23Sequence611002379 (13)ref|XP_009611798.1|2e-71PREDICTED: 40S ribosomal protein S15 [Nicotiana tomentosiformis]
JMFF014L16Sequence530002379 (13)gb|ADR71251.1|1e-7140S ribosomal protein S15D [Hevea brasiliensis]666002379 (13)gb|ADR71251.1|6e-7140S ribosomal protein S15D [Hevea brasiliensis]
JMFF031C11Sequence614002379 (13)ref|XP_009611798.1|2e-71PREDICTED: 40S ribosomal protein S15 [Nicotiana tomentosiformis]680002379 (13)ref|XP_009611798.1|5e-71PREDICTED: 40S ribosomal protein S15 [Nicotiana tomentosiformis]
JMFF041F16Sequence659002379 (13)ref|XP_009611798.1|4e-71PREDICTED: 40S ribosomal protein S15 [Nicotiana tomentosiformis]610002379 (13)ref|XP_010069156.1|9e-66PREDICTED: 40S ribosomal protein S15-4-like [Eucalyptus grandis]
JMFN016E11Sequence637002379 (13)ref|XP_009611798.1|5e-71PREDICTED: 40S ribosomal protein S15 [Nicotiana tomentosiformis]
JMFN016L17Sequence592002379 (13)gb|ADR71251.1|3e-7140S ribosomal protein S15D [Hevea brasiliensis]
JMFN018P20Sequence620002379 (13)ref|XP_009611798.1|3e-71PREDICTED: 40S ribosomal protein S15 [Nicotiana tomentosiformis]
JMFN028L21Sequence626002379 (13)ref|XP_009611798.1|1e-70PREDICTED: 40S ribosomal protein S15 [Nicotiana tomentosiformis]
JMFN030F03Sequence515002379 (13)ref|XP_004241029.1|6e-46PREDICTED: 40S ribosomal protein S15 [Solanum lycopersicum]
JMSF039A18Sequence613002379 (13)ref|XP_009611798.1|5e-69PREDICTED: 40S ribosomal protein S15 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN030F03-                                                    GATAAAAACTTGAGAGATT
                      ____________________________________________________________
consensus                                                      GATAAAAACTTGAGAGATT
 
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JMFN030F03-           TGGAAAATGCATAGTACAAAACCAATTTGATAGAACACAAGTAATAGATCCACTGTGCTC
rJMFF031C11-                                                 AGTAATAGATCCACTGTGCTC
                      ____________________________________________________________
consensus             TGGAAAATGCATAGTACAAAACCAATTTGATAGAACACAAGTAATAGATCCACTGTGCTC
 
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JMFN030F03-           ACTCATCAGCAATACCTAAGAACATAAACTAAAAAAGGGTTCTCATTTCTCACATTCATA
JMFF041F16+           ACTCATCAGCAATAGCTAAGAACATAAACTAAAAAAGGGTTCTCATTTCTCACATTCATA
JMFN016E11+              CATCAGCAATAGCTAAGAACATAAACTAAAAAAGGGTTCTCATTTCTCACATTCATA
JMFN018P20+                           TAAGAACATAAACTAAANAAGGGTTCTCATTTCTCACATTCATA
JMFN028L21+                       TAGCTAAGNACATAAACTAAAAGAGGGTTCTCATTTCTCACATTCATA
rJMFF031C11-          ACTCATCAGCAATAGCTAAGAACATAAACTAAAAAAGGGTTCTCATTTCTCACATTCATA
JMFF007A23+                                                           CTCACATTCATA
JMFN016L17+                                                               CATTCATA
JMFF031C11+                                                        TTTCTCACATTCATA
JMSF039A18+                                                          TCTCACATTCATA
                      ____________________________________________________________
consensus             ACTCATCAGCAATAGCTAAGAACATAAACTAAAAAAGGGTTCTCATTTCTCACATTCATA
 
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JMFN030F03-           ATATTACTTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
JMFF041F16+           ATATTCATTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
JMFN016E11+           ATATTCATTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
JMFN018P20+           ATATTCATTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
JMFN028L21+           ATATTCA-TGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
rJMFF031C11-          ATATTCATTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
JMFF007A23+           ATATTCATTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
JMFN016L17+           ATATTCATTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
JMFF014L16+                                                   CTAAGAAAGCACTTGGGGAA
JMFF031C11+           ATATTCATTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
JMSF039A18+           ATATTCATTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
                      ____________________________________________________________
consensus             ATATTCATTGAAACTGCAATAAATGTTACTGCTAAGATCCCTAAGAAAGCACTTGGGGAA
 
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JMFN030F03-           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
JMFF041F16+           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
JMFN016E11+           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
JMFN018P20+           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
JMFN028L21+           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
rJMFF031C11-          TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
JMFF007A23+           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
JMFN016L17+           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
JMFF014L16+           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
rJMFF014L16-                 TGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
rJMFF041F16-                 TGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
JMFF031C11+           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
JMSF039A18+           TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
                      ____________________________________________________________
consensus             TGGTAGGTGCATCACTTGAGTGGAATGAACCTCGAAGAGTGAGTAGCACCAATACCGGGC
 
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JMFN030F03-           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
JMFF041F16+           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
JMFN016E11+           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
JMFN018P20+           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
JMFN028L21+           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
rJMFF031C11-          CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
JMFF007A23+           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
JMFN016L17+           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
JMFF014L16+           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
rJMFF014L16-          CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
rJMFF041F16-          CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
JMFF031C11+           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
JMSF039A18+           CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGNTAAGTAGTGCCCAATCATC
                      ____________________________________________________________
consensus             CTACCGTGCTTGACAGGCTTGTATGAAATTGAGAACTCAGCTAAGTAGTGCCCAATCATC
 
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JMFN030F03-           TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
JMFF041F16+           TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
JMFN016E11+           TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
JMFN018P20+           TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
JMFN028L21+           TGTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
rJMFF031C11-          TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
JMFF007A23+           TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
JMFN016L17+           TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
JMFF014L16+           TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
rJMFF014L16-          TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
rJMFF041F16-          TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
JMFF031C11+           TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
JMSF039A18+           TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
                      ____________________________________________________________
consensus             TCTGGCTTAACCTCAATCTGGTTGAAGGTTTTTCCATTGTAAACACCGATGACACTTCCA
 
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JMFN030F03-           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
JMFF041F16+           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
JMFN016E11+           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
JMFN018P20+           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
JMFN028L21+           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
rJMFF031C11-          ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
JMFF007A23+           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
JMFN016L17+           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
JMFF014L16+           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
rJMFF014L16-          ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
rJMFF041F16-          ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
JMFF031C11+           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
JMSF039A18+           ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
                      ____________________________________________________________
consensus             ATCATCTCGGGAACAATAATCATGTTCCTAAGGTGAGTCTTGACAGGCTCCGGCTTCTCA
 
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JMFN030F03-           CCAAGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
JMFF041F16+           CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
JMFN016E11+           CCAGGTGGGGCCTCACGTTTTGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
JMFN018P20+           CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
JMFN028L21+           CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
rJMFF031C11-          CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
JMFF007A23+           CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
JMFN016L17+           CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
JMFF014L16+           CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
rJMFF014L16-          CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
rJMFF041F16-          CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
JMFF031C11+           CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
JMSF039A18+           CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTN
                      ____________________________________________________________
consensus             CCAGGTGGGGCCTCACGTTTCGCCTTGCGGAGTTTCTTAATCAGCGCCAATGGCTTCCTC
 
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JMFN030F03-           TTCAATCCCCTCTTAA                                            
JMFF041F16+           TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
JMFN016E11+           TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
JMFN018P20+           TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
JMFN028L21+           TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
rJMFF031C11-          TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
JMFF007A23+           TTCAACCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
JMFN016L17+           TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
JMFF014L16+           TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
rJMFF014L16-          TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
rJMFF041F16-          TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
JMFF031C11+           TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
JMSF039A18+           TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
                      ____________________________________________________________
consensus             TTCAATCCCCTCTTAAACCTTCTGCGAGCGCGGGCAGTGAAGAGCTTAACGAGATCATCG
 
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JMFF041F16+           GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
JMFN016E11+           GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
JMFN018P20+           GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
JMFN028L21+           GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
rJMFF031C11-          GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
JMFF007A23+           GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
JMFN016L17+           GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
JMFF014L16+           GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
rJMFF014L16-          GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
rJMFF041F16-          GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
JMFF031C11+           GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
JMSF039A18+           GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTNTTGAACGTT
                      ____________________________________________________________
consensus             GTGGACATGTCGAGAAGAGCATCGAGATCCACGCCCCTGAAGCTGAACTTCTTGAACGTT
 
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JMFF041F16+           CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
JMFN016E11+           CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
JMFN018P20+           CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
JMFN028L21+           CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
rJMFF031C11-          CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
JMFF007A23+           CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
JMFN016L17+           CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
JMFF014L16+           CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
rJMFF014L16-          CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
rJMFF041F16-          CTCTTCTTTGGCTGTCCGGCCG                                      
JMFF031C11+           CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
JMSF039A18+           NTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
                      ____________________________________________________________
consensus             CTCTTCTTTGGCTGTCCGGCCGCCACATCATGCTCTGCGTCCGCCATTGCTGTGGAAATG
 
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JMFF041F16+           CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGGCGCGACGGGCTCTTAGCGGCGAT 
JMFN016E11+           CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGGCGCG                    
JMFN018P20+           CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGG                        
JMFN028L21+           CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGGCGC                     
rJMFF031C11-          CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGGCGCGACGGGCTCTTAGCGGCGAT 
JMFF007A23+           CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGGCGCGACGGGCTCTTAGCGGCGAT 
JMFN016L17+           CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGGCGCGACGG                
JMFF014L16+           CAAGCTGAATCCTTCGCTGCAGAGTACTGC                              
rJMFF014L16-          CAAGCTGAATCCTTCGCTGCAGAGTACTGC                              
JMFF031C11+           CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGGCGCGACGGGCTCTTAGCGGCGAT 
JMSF039A18+           CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGGCGCGACGGGCTCTTAGCGGCGATC
                      ____________________________________________________________
consensus             CAAGCTGAATCCTTCGCTGCAGAGTACTGCGAGTGGCGCGACGGGCTCTTAGCGGCGATC