Contig 002378:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+                                 AGATCATAATCAATGATGGGCAGGTCAAGCGTTGGATG
JMFS024D09+                                        AATCAATGATGGGCAGGTCAAGCGTTGGATG
                      ____________________________________________________________
consensus                                   AGATCATAATCAATGATGGGCAGGTCAAGCGTTGGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           GCGTAGCTTGAGATTGTAATAAACGGTGGCACCTGCAGCGCCAGTGATCATACATTTCGA
JMFS024D09+           GCGTAGCTTGAGATTGTAATAAACGGTGGCACCTGCAGCGCCAGTGATCATACATTTCGA
                      ____________________________________________________________
consensus             GCGTAGCTTGAGATTGTAATAAACGGTGGCACCTGCAGCGCCAGTGATCATACATTTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           GATTGCAGTCGAGGACTTTGCATCAAATCCAATGATGAGAGTGAGCATTGGAACAAAAAT
JMFS024D09+           GATTGCAGTCGAGGACTTTGCATCAAATCCAATGATGAGAGTGAGCATTGGAACAAAAAT
                      ____________________________________________________________
consensus             GATTGCAGTCGAGGACTTTGCATCAAATCCAATGATGAGAGTGAGCATTGGAACAAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           CCCACCTCCTCCCACGCCTCCAACGCTCCCAAAAGCTGCACCAAAGAACCCAATCACACT
JMFS024D09+           CCCACCTCCTCCCACGCCTCCAACGCTCCCAAAAGCTGCACCAAAGAACCCAATCACACT
                      ____________________________________________________________
consensus             CCCACCTCCTCCCACGCCTCCAACGCTCCCAAAAGCTGCACCAAAGAACCCAATCACACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           ACCAAGAACTACCCTCCAGCCAAATTCCAAGTCAGGCCAAACATGTTGGTAAACTGCTTT
JMFS024D09+           ACCAAGAACTACCCTCCAGCCAAATTCCAAGTCAGGCCAAACATGTTGGTAAACTGCTTT
                      ____________________________________________________________
consensus             ACCAAGAACTACCCTCCAGCCAAATTCCAAGTCAGGCCAAACATGTTGGTAAACTGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           ACCAGCCTCCAAGAGGGAGTTGAGAAGCTCAAAAACGTAACCTGATATAAAGTCTTCTTC
JMFS024D09+           ACCAGCCTCCAAGAGGGAGTTGAGAAGCTCAAAAACGTAACCTGATCTAAAGTCTTCTTC
                      ____________________________________________________________
consensus             ACCAGCCTCCAAGAGGGAGTTGAGAAGCTCAAAAACGTAACCTGATCTAAAGTCTTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           TTCTTCTTCAGTTGTTCCATCGTTTCTCAAAATGTTTTTGTGGTGCCTTAGCTCTGCAGA
JMFS024D09+           TTCTTCTTCAGTTGTTCCATCGTTTCTCAAAATGTTTTTGTGGTGCCTTAGCTCTGCAGA
JMSF038O13+                                             TTTTTGTGGTGCCTTAGCTCTGCAGA
                      ____________________________________________________________
consensus             TTCTTCTTCAGTTGTTCCATCGTTTCTCAAAATGTTTTTGTGGTGCCTTAGCTCTGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           TGCCTCAGCAAAAGCAATACTTAGAAAAGCAAACGCAAGCACTGCAATCACAGTCACAAA
JMFS024D09+           TGCCTCAGCAAAAGCAATACTTAGAAAAGCAAACGCAAGCACTGCAATCACAGTCACAAA
JMSF038O13+           TGCCTCAGCAAAAGCAATACTTAGAAAAGCAAACGCAAGCACTGCAATCACAGTCACAAA
                      ____________________________________________________________
consensus             TGCCTCAGCAAAAGCAATACTTAGAAAAGCAAACGCAAGCACTGCAATCACAGTCACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           AGCCTTGAATCTTGAACCAGTTTCAGCCATCAATTGCAGAACCCCACTCCTTGTTCAAAG
JMFS024D09+           AGCCTTGAATCTTGAACCAGTTTCAGCCATCAATTGCAGAACCCCACTCCTTGTTCAAAG
JMSF038O13+           AGCCTTGAATCTTGAACCAGTTTCAGCCATCAATTGCAGAACCCCACTCCTTGTTCAAAG
                      ____________________________________________________________
consensus             AGCCTTGAATCTTGAACCAGTTTCAGCCATCAATTGCAGAACCCCACTCCTTGTTCAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           CTTCTATTGCCCAATCTGTAAAAGATCAACACCTTTATGAATATAATACCTAATTATTCT
JMFS024D09+           CTTCTATTGCCCAATCTGTAAAAGATCAACACCTTTATGAATATAATACCTAATTATTCT
JMSF038O13+           CTTCTATTGCCCAATCTGTAAAAGATCAACACCTTTATGAATATAATACCTAATTATTCT
                      ____________________________________________________________
consensus             CTTCTATTGCCCAATCTGTAAAAGATCAACACCTTTATGAATATAATACCTAATTATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS167G02+           CTTTGACTCTCAAGTCTGAACACACTATTCTGCTGT                        
JMFS024D09+           CTTTGACTCTCAAGTCTGAACACACTATTCTGCTGTTTCTCTCTCTCTTTCTCTCTCTAT
JMSF038O13+           CTTTGACTCTCAAGTCTGAACACACTATTCTGCTGTTTCTCTCTCTCTTTCTCTCTCTAT
                      ____________________________________________________________
consensus             CTTTGACTCTCAAGTCTGAACACACTATTCTGCTGTTTCTCTCTCTCTTTCTCTCTCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024D09+           ATGTAGTGTTG                                                 
JMSF038O13+           ATGTAGTGTTGGTATATTTTTAGCATTTCAAGTACTGAGGTGGTAACTTTCCTGGTTAGA
                      ____________________________________________________________
consensus             ATGTAGTGTTGGTATATTTTTAGCATTTCAAGTACTGAGGTGGTAACTTTCCTGGTTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038O13+           GAGCCGAGAGGTACTGAACGCAGAGCTCTTTCTCTCTGATGTGTACTGTGAGTATGCTTC
                      ____________________________________________________________
consensus             GAGCCGAGAGGTACTGAACGCAGAGCTCTTTCTCTCTGATGTGTACTGTGAGTATGCTTC